BDGP Sequence Production Resources |
Search the DGRC for LD42058
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 420 |
Well: | 58 |
Vector: | pOT2 |
Associated Gene/Transcript | ssp2-RA |
Protein status: | LD42058.pep: gold |
Preliminary Size: | 3341 |
Sequenced Size: | 3417 |
Gene | Date | Evidence |
---|---|---|
CG9028 | 2001-01-01 | Release 2 assignment |
CG9028 | 2001-07-04 | Blastp of sequenced clone |
CG9028 | 2003-01-01 | Sim4 clustering to Release 3 |
ssp2 | 2008-04-29 | Release 5.5 accounting |
ssp2 | 2008-08-15 | Release 5.9 accounting |
ssp2 | 2008-12-18 | 5.12 accounting |
3417 bp (3417 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051947
> LD42058.complete CCAAACAGACAAGCGAGCGAAGGCCTTTTTGTTGTCGTTTCTGGCAATGA TTTAGGTCTTCATCAAGTGTTATTAAGCTAGGCATAAAGTTTTACCCATC GCTGGACATGGATATCCTGGACATCGATGAGGCACTAAAGGATGATTCAT ATATATTTCTGGCGGATAAGACCCACGACGATGTCTCCAACATATTGCAG CAGTGGAAGACGAACAATCAGCCGCCGTTGCAGCAATTGCACTTGCAGTA CAACAACGAGGCCTTCAAAAACAATTCGAAAACCTTTACTCGCCCAAAGC GTCGGAATCTGGATTTCAGCCAAAATGGAGCGGGAAATGACAGCGGTGTT GGAACCGGGTCGGTCGCGGGTGCCCCAGCAATGCTTCAGCTGGAAATTGG CGGTCTTGTCACGACGAATATGCACAAATCCTTCCTGCAAGACACCTCAC CGCCGTCTTCCATCTGCTCCTCCATGAACACTGAACGGATGAACAACTCG CTAATCACCTCAGCAGACTTTACGAACTTGAACTTCCTTCAATCCACAAT TGGTCTTGAGCAGGATCCAAACCTTACCACTACGCTTACCAACCAGACAA CTGATAACATGGGAATCGGCGGCAGCATAGGCGGATATACGCTCAGTGAC ATGATCCGGGATCGCAAGGCGCTGGAGTCGCTGACCATGTGTGAGGACGA TGGGACTCTTATCAAAGACTCGCACATCGGGCAAATTGACGAAATATCGT TGACACTGAGCAAAACTGCTTCCGGCTGCAGCACAATGGACAACAGCACA GACAGTATGTCCATTCCCCTGGCCGCAGATCGAACGATGCCCGTTGTGGT ATCGGCAGTTTGTCCTGCCCTACAGCGTACCATGATTTTAGGGGAGGAGA TGATCGGCGACACAACTTTTAACCTCGTGGATAGCCTTACAACTTCTGCG CTGCAATCAGAGTCTGAGTCTCTGCCAGTCGATGGAAATGCGACATTCAA AAGACCCACTGCGAGTGCTACTACAGCGGACGAAACCCAGGTGCTAACAG GTAGGCAGATGAATACTACCTTCACCGACGGTTGCAACACTCCTGAGGGC CGCTGTGAAACGCCTGAAAATATTGACAGGAAGCTGGCCTTGCTCACCAT GGAATCCTCCACACCACTTACAACAAACATGCGCTCACACTGCTACCACA ATAACAACAATAATAACAAGGCAGGATATACCCCTACCCTAAAGGGAAGG GGAGATATGAACCTGTCCCCAATTGTTGGCGCAACACCGCAAAAACCAAC TGGAACCGCACCAGGGCGATTAAACAACACCTTTGAGCCCGTGGCAAAAA CAGCTCCGTTCAACGGCGAGAAGTTCGTGCTGGACACTATGGAGCTCTTG GAGCAGATCGAACAGCCGCTGGATGGCACTTACAACCTGCAAATGTCTGA ACAGCACAGGCAGATGCAATGCGTCATGGACTTGGCTGAGGCGGAAGTGG AGATGCTGGCCCAGCAGGGCGACGAAGAGCAATTCGAGAATATGCTTGCC GAGCTGGGCAAGGTGAATACCCTAAACGAGGAGCAACTGAAGATGCAAAA GTCGCTAGATACCATCAAACGGCGCTTCCATAGAGATGAGGCGGAGGCAG AGGAGCGTGAAGAGGAATTGCAGCAGTCGGCAGCCGAAAAGGTGGACACC CCAGTTCTAAATCAGAGCCACTCCAGCAGCAACAGCAGCGGCGGTGGTGG CGAACGGCTGCTCAGTCGCCGAAGTCGTCTCTACGACGATGTCAACCTTA GTGCAATGCACGGCAGTAATGGAAGTTCGACCAGCACCAACTCTGCCTCA TTCATCGTCCAGCGTAGAGATATGCCACAAGTGGAGCAGCCTGCACCAGA TCCTGATCCCGAACCAGCGGAAGAGCCTCCAAAGTCCCAGGTGACAGCAG AGATTGATCCGGCAAGCTATAAGCTGCCGGAGCGAAGAGAGCGGGATCGC GATCGCTTCAAGACCATTAAGATTTCGAAAGAAATGCGACTGCAGCCGGA AATTATTGTGCCTTGTATAGACGATGAACCACAGCAACTCGAGGACGAGC AAAAGCAATTAGTAGAAGATGTTCGGTACGAGGAGGATCAGCGACAGGGT TCACCACCGGGTCGACTTTCTCGTCGAGATCAGACCACAGCAATTAGCAA CAACGCAGATGCTAGTGCGAGTAACTATCTGACCTACAAAAAACCCAAGG AAAAGAGCCTTATCCAACGACGTCCGCAGCAGCAGGAAGCGCCTTTATTA GCCGAGCCAGCGCCTGCGTCGACTCTTCCCCAGCCGCGTTCCTTGTCCAG GCCTCGCTACATCAGTGGTCTTCAGAAGTTTACTACGGTGAGCAAGGCAA CTTCAGCCGGAGCGGGACTAAACGCCACTCCAGCCGCTGCTATGCCGACT ACTGTTACAGTGCCGGCCAACGGTAACGGGGAGCTGAAGAGCCCTATGGG TATTAAATCCAAATCTTTCCACAACTTGTCCTCCACAATGAGCGGCGTTG GCTCTGGAGCCCTGCCAAGACCTAGTTTGGGCGGTGGACTGCGGCGTCCC AGTGCGCAGCCGAGCAAGCTTATGAGCGGATTGCGTGGACCAACTCAAGC CCAAGAGGATGACTCCGCTGTATTTAAAGTACCGAAATTGGTGAGTGGGC TGCGTGCTCCTGGCCTTGCCCCGAAACGAGCAGGAGCTAATGGTTTAGCT CGACCTTCGTCCGGATATTACAGTCTGAGTGTTAAGACGGCACCAGAGGC AGACACTCCTGAGAGCCTCTCCTCAGCCTCTTCGCGTGGCAGCCTCTATG GCCACAAGGACTCCGGTAGAACCGTTAACGGCGGAAATGTTCCTCAACAG AATCCACAGCAAACCTTCGACATGCAGGCGCTTACCTCTAAGCTGACCCA GGTGACTACGGGAGCGACCGGCATACCAAAGCCCTCGGGGTTGAGACCAC CATCGCAAATAAAGCGTAGCGGTCTGCCGCGACCTTCCAGCATTGTTAGG CGCTGAGAGCTGATCACTTCCTCCGCCGCCGATTGTATGCATATGTCACA CACCCGCCTGAACCGACTTTCCATGTTATCAGTAAAATAGTCTAAATCTA TTCTTTTTGTACTTTGTGTTCAGTTCTATTTTTGTGTTTGTCATCCCAGC ATAGATGCTCATCTTGCCTAGTGGTTTCAAGGCACTAGCAACTATGATTT TGAATTAATATTACGACAAATTGTGCATTTAGTTGAACGATACATAAATA GAGAACTTGGCGACTTGTAAAACAATTACGCACTCCCAGAACCGCTTACA TTTATATATAGAACAAATACATCAACACGAACTTTGCCTTACGAACCATA AAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 13958815..13961155 | 318..2658 | 11555 | 99.6 | Plus |
chr3L | 24539361 | chr3L | 13961473..13962060 | 2812..3399 | 2895 | 99.5 | Plus |
chr3L | 24539361 | chr3L | 13961214..13961371 | 2656..2813 | 775 | 99.4 | Plus |
chr3L | 24539361 | chr3L | 13955293..13955446 | 1..154 | 740 | 98.7 | Plus |
chr3L | 24539361 | chr3L | 13955578..13955684 | 155..261 | 535 | 100 | Plus |
chr3L | 24539361 | chr3L | 13958700..13958756 | 261..317 | 285 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 13968761..13971101 | 318..2658 | 11705 | 100 | Plus |
3L | 28110227 | 3L | 13971419..13972020 | 2812..3413 | 2965 | 99.5 | Plus |
3L | 28110227 | 3L | 13971160..13971317 | 2656..2813 | 790 | 100 | Plus |
3L | 28110227 | 3L | 13965239..13965392 | 1..154 | 770 | 100 | Plus |
3L | 28110227 | 3L | 13965524..13965630 | 155..261 | 535 | 100 | Plus |
3L | 28110227 | 3L | 13968646..13968702 | 261..317 | 285 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 13961861..13964201 | 318..2658 | 11705 | 100 | Plus |
3L | 28103327 | 3L | 13964519..13965120 | 2812..3413 | 2965 | 99.5 | Plus |
3L | 28103327 | 3L | 13964260..13964417 | 2656..2813 | 790 | 100 | Plus |
3L | 28103327 | 3L | 13958339..13958492 | 1..154 | 770 | 100 | Plus |
3L | 28103327 | 3L | 13958624..13958730 | 155..261 | 535 | 100 | Plus |
3L | 28103327 | 3L | 13961746..13961802 | 261..317 | 285 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 13958815..13961154 | 318..2657 | 99 | -> | Plus |
chr3L | 13961216..13961371 | 2658..2813 | 99 | -> | Plus |
chr3L | 13955293..13955446 | 1..154 | 98 | -> | Plus |
chr3L | 13955578..13955684 | 155..261 | 100 | -> | Plus |
chr3L | 13958701..13958756 | 262..317 | 100 | -> | Plus |
chr3L | 13961475..13962060 | 2814..3399 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ssp2-RA | 1..2949 | 108..3056 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ssp2-RA | 1..2949 | 108..3056 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ssp2-RA | 1..2949 | 108..3056 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ssp2-RA | 1..2949 | 108..3056 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ssp2-RA | 1..2949 | 108..3056 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ssp2-RA | 35..3433 | 1..3399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ssp2-RA | 35..3433 | 1..3399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ssp2-RA | 37..3435 | 1..3399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ssp2-RA | 35..3433 | 1..3399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ssp2-RA | 37..3435 | 1..3399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13965239..13965392 | 1..154 | 100 | -> | Plus |
3L | 13965524..13965630 | 155..261 | 100 | -> | Plus |
3L | 13968647..13968702 | 262..317 | 100 | -> | Plus |
3L | 13968761..13971100 | 318..2657 | 100 | -> | Plus |
3L | 13971162..13971317 | 2658..2813 | 100 | -> | Plus |
3L | 13971421..13972006 | 2814..3399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13965239..13965392 | 1..154 | 100 | -> | Plus |
3L | 13965524..13965630 | 155..261 | 100 | -> | Plus |
3L | 13968647..13968702 | 262..317 | 100 | -> | Plus |
3L | 13968761..13971100 | 318..2657 | 100 | -> | Plus |
3L | 13971162..13971317 | 2658..2813 | 100 | -> | Plus |
3L | 13971421..13972006 | 2814..3399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13965239..13965392 | 1..154 | 100 | -> | Plus |
3L | 13965524..13965630 | 155..261 | 100 | -> | Plus |
3L | 13968647..13968702 | 262..317 | 100 | -> | Plus |
3L | 13968761..13971100 | 318..2657 | 100 | -> | Plus |
3L | 13971162..13971317 | 2658..2813 | 100 | -> | Plus |
3L | 13971421..13972006 | 2814..3399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 13958339..13958492 | 1..154 | 100 | -> | Plus |
arm_3L | 13958624..13958730 | 155..261 | 100 | -> | Plus |
arm_3L | 13961747..13961802 | 262..317 | 100 | -> | Plus |
arm_3L | 13961861..13964200 | 318..2657 | 100 | -> | Plus |
arm_3L | 13964262..13964417 | 2658..2813 | 100 | -> | Plus |
arm_3L | 13964521..13965106 | 2814..3399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13958339..13958492 | 1..154 | 100 | -> | Plus |
3L | 13958624..13958730 | 155..261 | 100 | -> | Plus |
3L | 13961747..13961802 | 262..317 | 100 | -> | Plus |
3L | 13961861..13964200 | 318..2657 | 100 | -> | Plus |
3L | 13964262..13964417 | 2658..2813 | 100 | -> | Plus |
3L | 13964521..13965106 | 2814..3399 | 100 | Plus |
Translation from 107 to 3055
> LD42058.pep MDILDIDEALKDDSYIFLADKTHDDVSNILQQWKTNNQPPLQQLHLQYNN EAFKNNSKTFTRPKRRNLDFSQNGAGNDSGVGTGSVAGAPAMLQLEIGGL VTTNMHKSFLQDTSPPSSICSSMNTERMNNSLITSADFTNLNFLQSTIGL EQDPNLTTTLTNQTTDNMGIGGSIGGYTLSDMIRDRKALESLTMCEDDGT LIKDSHIGQIDEISLTLSKTASGCSTMDNSTDSMSIPLAADRTMPVVVSA VCPALQRTMILGEEMIGDTTFNLVDSLTTSALQSESESLPVDGNATFKRP TASATTADETQVLTGRQMNTTFTDGCNTPEGRCETPENIDRKLALLTMES STPLTTNMRSHCYHNNNNNNKAGYTPTLKGRGDMNLSPIVGATPQKPTGT APGRLNNTFEPVAKTAPFNGEKFVLDTMELLEQIEQPLDGTYNLQMSEQH RQMQCVMDLAEAEVEMLAQQGDEEQFENMLAELGKVNTLNEEQLKMQKSL DTIKRRFHRDEAEAEEREEELQQSAAEKVDTPVLNQSHSSSNSSGGGGER LLSRRSRLYDDVNLSAMHGSNGSSTSTNSASFIVQRRDMPQVEQPAPDPD PEPAEEPPKSQVTAEIDPASYKLPERRERDRDRFKTIKISKEMRLQPEII VPCIDDEPQQLEDEQKQLVEDVRYEEDQRQGSPPGRLSRRDQTTAISNNA DASASNYLTYKKPKEKSLIQRRPQQQEAPLLAEPAPASTLPQPRSLSRPR YISGLQKFTTVSKATSAGAGLNATPAAAMPTTVTVPANGNGELKSPMGIK SKSFHNLSSTMSGVGSGALPRPSLGGGLRRPSAQPSKLMSGLRGPTQAQE DDSAVFKVPKLVSGLRAPGLAPKRAGANGLARPSSGYYSLSVKTAPEADT PESLSSASSRGSLYGHKDSGRTVNGGNVPQQNPQQTFDMQALTSKLTQVT TGATGIPKPSGLRPPSQIKRSGLPRPSSIVRR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24051-PA | 982 | GF24051-PA | 1..982 | 1..982 | 3568 | 79.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15659-PA | 982 | GG15659-PA | 1..982 | 1..982 | 4474 | 95.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17202-PA | 980 | GH17202-PA | 1..980 | 1..982 | 2301 | 56.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ssp2-PC | 982 | CG9028-PC | 1..982 | 1..982 | 5030 | 100 | Plus |
ssp2-PA | 982 | CG9028-PA | 1..982 | 1..982 | 5030 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11312-PA | 998 | GI11312-PA | 1..998 | 1..982 | 2134 | 52.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15718-PA | 1391 | GL15718-PA | 493..1391 | 51..982 | 2939 | 69.8 | Plus |
Dper\GL15718-PA | 1391 | GL15718-PA | 1..48 | 1..51 | 234 | 86.3 | Plus |
Dper\GL25915-PA | 587 | GL25915-PA | 477..545 | 109..202 | 161 | 49.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA23771-PA | 1001 | GA23771-PA | 1..1001 | 1..982 | 3478 | 76 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25438-PA | 1379 | GM25438-PA | 450..1379 | 53..982 | 4828 | 97.8 | Plus |
Dsec\GM25438-PA | 1379 | GM25438-PA | 1..53 | 1..53 | 288 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14465-PA | 1456 | GD14465-PA | 540..1456 | 53..982 | 4732 | 96.1 | Plus |
Dsim\GD14465-PA | 1456 | GD14465-PA | 1..66 | 1..71 | 294 | 77.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14104-PA | 998 | GJ14104-PA | 1..998 | 1..982 | 2383 | 58.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12426-PA | 986 | GK12426-PA | 1..986 | 1..948 | 2682 | 64.5 | Plus |
Translation from 107 to 3055
> LD42058.hyp MDILDIDEALKDDSYIFLADKTHDDVSNILQQWKTNNQPPLQQLHLQYNN EAFKNNSKTFTRPKRRNLDFSQNGAGNDSGVGTGSVAGAPAMLQLEIGGL VTTNMHKSFLQDTSPPSSICSSMNTERMNNSLITSADFTNLNFLQSTIGL EQDPNLTTTLTNQTTDNMGIGGSIGGYTLSDMIRDRKALESLTMCEDDGT LIKDSHIGQIDEISLTLSKTASGCSTMDNSTDSMSIPLAADRTMPVVVSA VCPALQRTMILGEEMIGDTTFNLVDSLTTSALQSESESLPVDGNATFKRP TASATTADETQVLTGRQMNTTFTDGCNTPEGRCETPENIDRKLALLTMES STPLTTNMRSHCYHNNNNNNKAGYTPTLKGRGDMNLSPIVGATPQKPTGT APGRLNNTFEPVAKTAPFNGEKFVLDTMELLEQIEQPLDGTYNLQMSEQH RQMQCVMDLAEAEVEMLAQQGDEEQFENMLAELGKVNTLNEEQLKMQKSL DTIKRRFHRDEAEAEEREEELQQSAAEKVDTPVLNQSHSSSNSSGGGGER LLSRRSRLYDDVNLSAMHGSNGSSTSTNSASFIVQRRDMPQVEQPAPDPD PEPAEEPPKSQVTAEIDPASYKLPERRERDRDRFKTIKISKEMRLQPEII VPCIDDEPQQLEDEQKQLVEDVRYEEDQRQGSPPGRLSRRDQTTAISNNA DASASNYLTYKKPKEKSLIQRRPQQQEAPLLAEPAPASTLPQPRSLSRPR YISGLQKFTTVSKATSAGAGLNATPAAAMPTTVTVPANGNGELKSPMGIK SKSFHNLSSTMSGVGSGALPRPSLGGGLRRPSAQPSKLMSGLRGPTQAQE DDSAVFKVPKLVSGLRAPGLAPKRAGANGLARPSSGYYSLSVKTAPEADT PESLSSASSRGSLYGHKDSGRTVNGGNVPQQNPQQTFDMQALTSKLTQVT TGATGIPKPSGLRPPSQIKRSGLPRPSSIVRR*