Clone LD42070 Report

Search the DGRC for LD42070

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:420
Well:70
Vector:pOT2
Associated Gene/TranscriptXbp1-RD
Protein status:LD42070.pep: gold
Sequenced Size:2083

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9415 2007-03-28 Manual selection by Ken Wan
Xbp1 2008-04-29 Release 5.5 accounting
Xbp1 2008-08-15 Release 5.9 accounting
Xbp1 2008-12-18 5.12 accounting

Clone Sequence Records

LD42070.complete Sequence

2083 bp (2083 high quality bases) assembled on 2005-08-22

GenBank Submission: BT021380

> LD42070.complete
GAAAACTGGTCGGTCGATATTGCAAAGGTGGATGAGAAAATTGCGTGAGA
CGGAGCCAGAAAAGCCCGAGTCGGCGGCGATGAAGAGATTCAAACCAGCA
GAGCGTCCGAGAAGCGCAGTCGAAGTTCATGAGACGACCTAAAACAAGCA
AAAGTTAAAATACGCTCTTACAATGCAAATCTAAGTGGAAAGTCGCTTTT
CACAATTGCACACAGCACACAGCAGTTTATCATTTAGCCCCGAACCAGTT
AAACATGGCACCCACAGCAAACACAGTGCTAATTACCGTGCCGCGGACAG
CAATCACATCGAATAATCTGCCCAAATTGCGGCCCGCCCCCCTTACGGCA
GCTCTGCTGAAGGTGTCGGCCACGCCCTCCGCCTCGCCCACGCCCTCGAG
TTCGGGATACGCATCCTCGTCGAACATGGATGACGATAACATGGCTGCAT
CCCAGCCCAAGGCCAAGAAGCGTCGCCTGGACCATCTAACCTGGGAGGAG
AAAGTGCAAAGAAAGAAGCTAAAGAACCGTGTGGCCGCCCAGACATCGCG
TGACCGCAAGAAGGCACGCATGGAGGAGATGGACTACGAGATCAAGGAGC
TGACAGACAGAACGGAAATACTACAGAACAAGTGCGATAGCCTGCAGGCC
ATCAACGAGTCACTGCTGGCCAAGAACCACAAGCTGGACTCGGAGCTGGA
GCTGCTGCGCCAAGAACTCGCCGAACTGAAGCAGCAACAGCAGCACAACA
CCAGATGCATCAGCCAATCCAACGCCAGCGCAGGCGCTGAGGGCTGTGCG
TCCACCAACCTTGGATCTGCAGCATCCAAAGCTGACCCTCTGCCGCAGGG
TATACAACAGGTGGACACACAGTCGTCAGCGCGTCTGCTGGCGGAGCAGC
TGAAGAGCAGCAAGAGCCTGGCCTCACTCTGGAAAGTTGTGGCCCTCTGC
CTACTCTACAAGACATGCTTGGCGTCGACGAAGAGTTCGACGTCAAGCGC
CTCGAAGAGCTGGCCGAAAGTCTGCTCGCAGATATCACAGCAGACCTGGA
AACAGGCGCTGGAGCGAGCAGCCCAGCTGCTGCCCAAGATGCAGGCAACG
CAGAGCGATTGCCTGGACCAATGGTGGGGCCCGCAGCAGAGCGCTTGGAA
TCCGACGGGCATAGAGCTAATGGCCTGAATGTTGAGCAGGAACAGGAAAC
CGAGCACAAGGTCAGCCTAAATGTGCAGATGTTGAAGATAAATGGAAACC
CACAGCATACCACAGCAGCGCCAGCCTCGAGAACAGCCACAATCACAGCG
ACAGCGGCCGCCTCGCAACTACAGGCCACTCCGGACACAGTGTACGGCAC
GTATGATGCCAAGACGAACTCGATCACCATCGTGATGGACGGGGATGCGG
TGCCGGTGAACGAGGCCGTCGAGGAGATCTACTGTGACGGCGTCAGCGCT
GGCGACGACTCAACGGACGTGATCATGAAGTGTCCGCCGCCAGCGACGTC
TCCGTCACAGGTCTATCTCAACGTGATGAACGCCGTCGACAATTCGGACG
ACGAGGAAAGCTTCGATCCGATCGACCGATTCCTACGTCCGCGCGTTAAG
GCGATCTCCCCGTTGGCCAAATCCCCCGCATTGTCTCTACACTCGGCCAC
CTCGGACCATGGATACGAGTCCATACTGGGCTCTCCCACATCCGTGGCTC
TCACTCTGCCCGCAGATGAGGACGATTTCCCCTGGGAGAGCAACTTTGAC
GAGCTGTTTCCCAGTTTGATCTGAGTTTTTCAAGCTGAAAACTTCGTTCT
GTCTCTCTTTTATTGTTAAGTTTGGCCGGCCGCCGTTTGTTTAAGTTTTT
TAGTTGATAGGCTGTACATAAATTCATAATCGAAGGCTTTATATATGATA
CTGTAGTTAGAGCGCTAAGTTTAGCTGTAGGTTTCCATTTATATTTAACA
ATCTCTAACCACATAGGCTTATGATTACTCTTATATGTATGTATTGTGCT
CAAAGAATTTGAAAAAAAAACATTTGACTAAAAAATATTCAAAATATAAA
CCAAACCAAACAACAAAAAAAAAAAAAAAAAAA

LD42070.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
Xbp1-RC 2279 Xbp1-RC 147..2212 1..2066 10330 100 Plus
nc_8304.a 574 nc_8304.a 1..201 485..285 1005 100 Minus
nc_8304.a 574 nc_8304.a 199..337 139..1 695 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17030671..17032206 515..2064 7475 99 Plus
chr2R 21145070 chr2R 17030094..17030608 1..515 2545 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21144201..21145752 515..2066 7760 100 Plus
2R 25286936 2R 21143623..21144137 1..515 2575 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21145400..21146951 515..2066 7760 100 Plus
2R 25260384 2R 21144822..21145336 1..515 2575 100 Plus
Blast to na_te.dros performed 2019-03-16 16:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3254..3342 698..785 172 67.4 Plus
roo 9092 roo DM_ROO 9092bp 1048..1177 654..778 150 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2417 678..783 138 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6806 694..779 137 64 Plus
roo 9092 roo DM_ROO 9092bp 1059..1145 694..779 135 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..6856 671..783 134 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6780..6890 673..779 132 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2756..2879 671..792 130 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2822 724..766 127 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2388 698..779 124 62.7 Plus

LD42070.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:43:24 Download gff for LD42070.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17030094..17030607 1..514 99 -> Plus
chr2R 17030671..17031993 515..1837 99 == Plus
chr2R 17031994..17032206 1852..2064 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:24:43 Download gff for LD42070.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RC 1..1520 255..1774 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:54:26 Download gff for LD42070.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RC 1..1520 255..1774 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:38 Download gff for LD42070.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RE 1..559 255..813 100 == Plus
Xbp1-RE 560..1497 834..1774 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:35:09 Download gff for LD42070.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RB 1..538 255..792 100 == Plus
Xbp1-RB 539..1467 845..1774 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:38:11 Download gff for LD42070.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RE 1..559 255..813 100 == Plus
Xbp1-RE 560..1497 834..1774 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:30:01 Download gff for LD42070.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RC 79..2142 1..2064 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:54:26 Download gff for LD42070.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RC 79..2142 1..2064 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:38 Download gff for LD42070.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RD 75..2138 1..2064 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:35:10 Download gff for LD42070.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RA 79..2142 1..2064 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:38:11 Download gff for LD42070.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RD 75..2138 1..2064 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:24 Download gff for LD42070.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21143623..21144136 1..514 100 -> Plus
2R 21144201..21145750 515..2064 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:24 Download gff for LD42070.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21143623..21144136 1..514 100 -> Plus
2R 21144201..21145750 515..2064 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:24 Download gff for LD42070.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21143623..21144136 1..514 100 -> Plus
2R 21144201..21145750 515..2064 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:38 Download gff for LD42070.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17031128..17031641 1..514 100 -> Plus
arm_2R 17031706..17033255 515..2064 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:13:45 Download gff for LD42070.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21144822..21145335 1..514 100 -> Plus
2R 21145400..21146949 515..2064 100   Plus

LD42070.pep Sequence

Translation from 254 to 1177

> LD42070.pep
MAPTANTVLITVPRTAITSNNLPKLRPAPLTAALLKVSATPSASPTPSSS
GYASSSNMDDDNMAASQPKAKKRRLDHLTWEEKVQRKKLKNRVAAQTSRD
RKKARMEEMDYEIKELTDRTEILQNKCDSLQAINESLLAKNHKLDSELEL
LRQELAELKQQQQHNTRCISQSNASAGAEGCASTNLGSAASKADPLPQGI
QQVDTQSSARLLAEQLKSSKSLASLWKVVALCLLYKTCLASTKSSTSSAS
KSWPKVCSQISQQTWKQALERAAQLLPKMQATQSDCLDQWWGPQQSAWNP
TGIELMA*

LD42070.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11937-PA 316 GF11937-PA 1..316 1..307 1235 79.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22091-PA 307 GG22091-PA 1..307 1..307 1536 96.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20722-PA 322 GH20722-PA 1..322 1..307 970 66.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
Xbp1-PD 307 CG9415-PD 1..307 1..307 1554 100 Plus
Xbp1-PE 498 CG9415-PE 1..190 1..190 948 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20807-PA 321 GI20807-PA 16..321 17..307 904 64.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10156-PA 310 GL10156-PA 1..310 1..307 1112 76.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30271-PB 310 GA30271-PB 1..310 1..307 1112 76.1 Plus
Dpse\GA30271-PA 504 GA30271-PA 1..194 1..191 622 71.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15809-PA 307 GM15809-PA 1..307 1..307 1545 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11567-PA 307 GD11567-PA 1..307 1..307 1560 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20540-PA 316 GJ20540-PA 1..316 1..307 952 68 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19655-PA 314 GK19655-PA 1..314 1..307 961 68.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12171-PA 307 GE12171-PA 1..307 1..307 1558 97.7 Plus
Dyak\GE14587-PA 131 GE14587-PA 1..36 1..36 172 94.4 Plus
Dyak\GE14821-PA 97 GE14821-PA 1..36 1..36 168 94.4 Plus

LD42070.hyp Sequence

Translation from 254 to 1177

> LD42070.hyp
MAPTANTVLITVPRTAITSNNLPKLRPAPLTAALLKVSATPSASPTPSSS
GYASSSNMDDDNMAASQPKAKKRRLDHLTWEEKVQRKKLKNRVAAQTSRD
RKKARMEEMDYEIKELTDRTEILQNKCDSLQAINESLLAKNHKLDSELEL
LRQELAELKQQQQHNTRCISQSNASAGAEGCASTNLGSAASKADPLPQGI
QQVDTQSSARLLAEQLKSSKSLASLWKVVALCLLYKTCLASTKSSTSSAS
KSWPKVCSQISQQTWKQALERAAQLLPKMQATQSDCLDQWWGPQQSAWNP
TGIELMA*

LD42070.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
Xbp1-PD 307 CG9415-PD 1..307 1..307 1554 100 Plus
Xbp1-PE 498 CG9415-PE 1..190 1..190 948 100 Plus