BDGP Sequence Production Resources |
Search the DGRC for LD42070
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 420 |
Well: | 70 |
Vector: | pOT2 |
Associated Gene/Transcript | Xbp1-RD |
Protein status: | LD42070.pep: gold |
Sequenced Size: | 2083 |
Gene | Date | Evidence |
---|---|---|
CG9415 | 2007-03-28 | Manual selection by Ken Wan |
Xbp1 | 2008-04-29 | Release 5.5 accounting |
Xbp1 | 2008-08-15 | Release 5.9 accounting |
Xbp1 | 2008-12-18 | 5.12 accounting |
2083 bp (2083 high quality bases) assembled on 2005-08-22
GenBank Submission: BT021380
> LD42070.complete GAAAACTGGTCGGTCGATATTGCAAAGGTGGATGAGAAAATTGCGTGAGA CGGAGCCAGAAAAGCCCGAGTCGGCGGCGATGAAGAGATTCAAACCAGCA GAGCGTCCGAGAAGCGCAGTCGAAGTTCATGAGACGACCTAAAACAAGCA AAAGTTAAAATACGCTCTTACAATGCAAATCTAAGTGGAAAGTCGCTTTT CACAATTGCACACAGCACACAGCAGTTTATCATTTAGCCCCGAACCAGTT AAACATGGCACCCACAGCAAACACAGTGCTAATTACCGTGCCGCGGACAG CAATCACATCGAATAATCTGCCCAAATTGCGGCCCGCCCCCCTTACGGCA GCTCTGCTGAAGGTGTCGGCCACGCCCTCCGCCTCGCCCACGCCCTCGAG TTCGGGATACGCATCCTCGTCGAACATGGATGACGATAACATGGCTGCAT CCCAGCCCAAGGCCAAGAAGCGTCGCCTGGACCATCTAACCTGGGAGGAG AAAGTGCAAAGAAAGAAGCTAAAGAACCGTGTGGCCGCCCAGACATCGCG TGACCGCAAGAAGGCACGCATGGAGGAGATGGACTACGAGATCAAGGAGC TGACAGACAGAACGGAAATACTACAGAACAAGTGCGATAGCCTGCAGGCC ATCAACGAGTCACTGCTGGCCAAGAACCACAAGCTGGACTCGGAGCTGGA GCTGCTGCGCCAAGAACTCGCCGAACTGAAGCAGCAACAGCAGCACAACA CCAGATGCATCAGCCAATCCAACGCCAGCGCAGGCGCTGAGGGCTGTGCG TCCACCAACCTTGGATCTGCAGCATCCAAAGCTGACCCTCTGCCGCAGGG TATACAACAGGTGGACACACAGTCGTCAGCGCGTCTGCTGGCGGAGCAGC TGAAGAGCAGCAAGAGCCTGGCCTCACTCTGGAAAGTTGTGGCCCTCTGC CTACTCTACAAGACATGCTTGGCGTCGACGAAGAGTTCGACGTCAAGCGC CTCGAAGAGCTGGCCGAAAGTCTGCTCGCAGATATCACAGCAGACCTGGA AACAGGCGCTGGAGCGAGCAGCCCAGCTGCTGCCCAAGATGCAGGCAACG CAGAGCGATTGCCTGGACCAATGGTGGGGCCCGCAGCAGAGCGCTTGGAA TCCGACGGGCATAGAGCTAATGGCCTGAATGTTGAGCAGGAACAGGAAAC CGAGCACAAGGTCAGCCTAAATGTGCAGATGTTGAAGATAAATGGAAACC CACAGCATACCACAGCAGCGCCAGCCTCGAGAACAGCCACAATCACAGCG ACAGCGGCCGCCTCGCAACTACAGGCCACTCCGGACACAGTGTACGGCAC GTATGATGCCAAGACGAACTCGATCACCATCGTGATGGACGGGGATGCGG TGCCGGTGAACGAGGCCGTCGAGGAGATCTACTGTGACGGCGTCAGCGCT GGCGACGACTCAACGGACGTGATCATGAAGTGTCCGCCGCCAGCGACGTC TCCGTCACAGGTCTATCTCAACGTGATGAACGCCGTCGACAATTCGGACG ACGAGGAAAGCTTCGATCCGATCGACCGATTCCTACGTCCGCGCGTTAAG GCGATCTCCCCGTTGGCCAAATCCCCCGCATTGTCTCTACACTCGGCCAC CTCGGACCATGGATACGAGTCCATACTGGGCTCTCCCACATCCGTGGCTC TCACTCTGCCCGCAGATGAGGACGATTTCCCCTGGGAGAGCAACTTTGAC GAGCTGTTTCCCAGTTTGATCTGAGTTTTTCAAGCTGAAAACTTCGTTCT GTCTCTCTTTTATTGTTAAGTTTGGCCGGCCGCCGTTTGTTTAAGTTTTT TAGTTGATAGGCTGTACATAAATTCATAATCGAAGGCTTTATATATGATA CTGTAGTTAGAGCGCTAAGTTTAGCTGTAGGTTTCCATTTATATTTAACA ATCTCTAACCACATAGGCTTATGATTACTCTTATATGTATGTATTGTGCT CAAAGAATTTGAAAAAAAAACATTTGACTAAAAAATATTCAAAATATAAA CCAAACCAAACAACAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3254..3342 | 698..785 | 172 | 67.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1048..1177 | 654..778 | 150 | 61.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2417 | 678..783 | 138 | 61.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6806 | 694..779 | 137 | 64 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1145 | 694..779 | 135 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6856 | 671..783 | 134 | 60.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6890 | 673..779 | 132 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2756..2879 | 671..792 | 130 | 58.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2822 | 724..766 | 127 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2388 | 698..779 | 124 | 62.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 17030094..17030607 | 1..514 | 99 | -> | Plus |
chr2R | 17030671..17031993 | 515..1837 | 99 | == | Plus |
chr2R | 17031994..17032206 | 1852..2064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Xbp1-RC | 1..1520 | 255..1774 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Xbp1-RC | 1..1520 | 255..1774 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Xbp1-RE | 1..559 | 255..813 | 100 | == | Plus |
Xbp1-RE | 560..1497 | 834..1774 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Xbp1-RB | 1..538 | 255..792 | 100 | == | Plus |
Xbp1-RB | 539..1467 | 845..1774 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Xbp1-RE | 1..559 | 255..813 | 100 | == | Plus |
Xbp1-RE | 560..1497 | 834..1774 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Xbp1-RC | 79..2142 | 1..2064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Xbp1-RC | 79..2142 | 1..2064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Xbp1-RD | 75..2138 | 1..2064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Xbp1-RA | 79..2142 | 1..2064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Xbp1-RD | 75..2138 | 1..2064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21143623..21144136 | 1..514 | 100 | -> | Plus |
2R | 21144201..21145750 | 515..2064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21143623..21144136 | 1..514 | 100 | -> | Plus |
2R | 21144201..21145750 | 515..2064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21143623..21144136 | 1..514 | 100 | -> | Plus |
2R | 21144201..21145750 | 515..2064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 17031128..17031641 | 1..514 | 100 | -> | Plus |
arm_2R | 17031706..17033255 | 515..2064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21144822..21145335 | 1..514 | 100 | -> | Plus |
2R | 21145400..21146949 | 515..2064 | 100 | Plus |
Translation from 254 to 1177
> LD42070.pep MAPTANTVLITVPRTAITSNNLPKLRPAPLTAALLKVSATPSASPTPSSS GYASSSNMDDDNMAASQPKAKKRRLDHLTWEEKVQRKKLKNRVAAQTSRD RKKARMEEMDYEIKELTDRTEILQNKCDSLQAINESLLAKNHKLDSELEL LRQELAELKQQQQHNTRCISQSNASAGAEGCASTNLGSAASKADPLPQGI QQVDTQSSARLLAEQLKSSKSLASLWKVVALCLLYKTCLASTKSSTSSAS KSWPKVCSQISQQTWKQALERAAQLLPKMQATQSDCLDQWWGPQQSAWNP TGIELMA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11937-PA | 316 | GF11937-PA | 1..316 | 1..307 | 1235 | 79.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22091-PA | 307 | GG22091-PA | 1..307 | 1..307 | 1536 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20722-PA | 322 | GH20722-PA | 1..322 | 1..307 | 970 | 66.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Xbp1-PD | 307 | CG9415-PD | 1..307 | 1..307 | 1554 | 100 | Plus |
Xbp1-PE | 498 | CG9415-PE | 1..190 | 1..190 | 948 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20807-PA | 321 | GI20807-PA | 16..321 | 17..307 | 904 | 64.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10156-PA | 310 | GL10156-PA | 1..310 | 1..307 | 1112 | 76.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA30271-PB | 310 | GA30271-PB | 1..310 | 1..307 | 1112 | 76.1 | Plus |
Dpse\GA30271-PA | 504 | GA30271-PA | 1..194 | 1..191 | 622 | 71.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15809-PA | 307 | GM15809-PA | 1..307 | 1..307 | 1545 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11567-PA | 307 | GD11567-PA | 1..307 | 1..307 | 1560 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20540-PA | 316 | GJ20540-PA | 1..316 | 1..307 | 952 | 68 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19655-PA | 314 | GK19655-PA | 1..314 | 1..307 | 961 | 68.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12171-PA | 307 | GE12171-PA | 1..307 | 1..307 | 1558 | 97.7 | Plus |
Dyak\GE14587-PA | 131 | GE14587-PA | 1..36 | 1..36 | 172 | 94.4 | Plus |
Dyak\GE14821-PA | 97 | GE14821-PA | 1..36 | 1..36 | 168 | 94.4 | Plus |
Translation from 254 to 1177
> LD42070.hyp MAPTANTVLITVPRTAITSNNLPKLRPAPLTAALLKVSATPSASPTPSSS GYASSSNMDDDNMAASQPKAKKRRLDHLTWEEKVQRKKLKNRVAAQTSRD RKKARMEEMDYEIKELTDRTEILQNKCDSLQAINESLLAKNHKLDSELEL LRQELAELKQQQQHNTRCISQSNASAGAEGCASTNLGSAASKADPLPQGI QQVDTQSSARLLAEQLKSSKSLASLWKVVALCLLYKTCLASTKSSTSSAS KSWPKVCSQISQQTWKQALERAAQLLPKMQATQSDCLDQWWGPQQSAWNP TGIELMA*