Clone LD42113 Report

Search the DGRC for LD42113

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:421
Well:13
Vector:pOT2
Associated Gene/TranscriptPrat-RA
Protein status:LD42113.pep: gold
Preliminary Size:2161
Sequenced Size:2127

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2867 2001-01-01 Release 2 assignment
CG2867 2001-11-09 Blastp of sequenced clone
CG2867 2003-01-01 Sim4 clustering to Release 3
Prat 2008-04-29 Release 5.5 accounting
Prat 2008-08-15 Release 5.9 accounting
Prat 2008-12-18 5.12 accounting

Clone Sequence Records

LD42113.complete Sequence

2127 bp (2127 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069652

> LD42113.complete
AAAAACTGAGCTGCGCGTGCGAGCGTGCGAGGATTTTTCTTGTATAAAAC
CGTTGCGTAAATCAGCAGCAGCAACATGTCAGCGCCACAGCAACAACAAC
AGTCGCAGCAGAAGCAACAACAACATGTGCGCGTGGTCGAGCAACAACAG
GTGGAACCAGCTGAGGCGGTGACCTCCAGCATGGAATCGGAATCCATCTC
GGCCAGCAAGGAGCTAACCGGTTTGACGCACGAGTGCGGCGTTTTCGGGG
CAATCGCTTGCGGAGATTGGCCCACCCAAATGGACATTGCACACGTGATC
TGTTTGGGGCTGGTGGCACTGCAGCATCGTGGGCAGGAGTCTGCGGGCAT
AGCGACCAGCGAGGGAAAGTGCTCCAAGAACTTCAACGTGCACAAGGGCA
TGGGTATGATCAGCACCCTGTTCAACGACGACTCCATGAAGAAGCTTCGT
GGCAACCTGGGCATCGGTCATACACGCTACTCGACCGCTGGCGGATCCGG
AGTGGTTAACTGTCAGCCCTTTGAGGTACATACGACACATGGAGCATTGG
CCCTGGCCCACAATGGTGAGCTTGTTAACAACGAATCTCTAAGAAGGGAG
GTTTTGGCCAGAGGCGTGGGCTTATCCACGCACAGCGACAGTGAGTTGAT
CGCCCAGTCGTTGTGCTGCGCCCCGGAGGATGTTTCCGAACTGGATGGAC
CCAACTGGCCAGCTAGGATCAGGCATTTCATGATGCTGGCGCCACTCTCC
TACTCGCTGGTCATCATGCTAAAGGACAAAATCTACGCCGTGAGGGACAC
CTATGGAAATAGGCCGCTATGCATTGGCAAGATAGTGCCCATCAATGCTG
GGCACGGAAATAACTTAGACACACCTGCCGATGGTTGGGTGGTGTCCAGT
GAGAGCTGTGGCTTCCTGTCGATCGGTGCCAGATACGTCCGCGAAGTGGA
GCCTGGAGAGATAGTGGAGCTGTCGCGAAGTGGCTACCGCACGGTGGACA
TTGTGGAAAGACCCGACTTCAAGCGCATGGCCTTTTGTATATTTGAGTAC
GTTTACTTCGCCCGCGGAGACAGCATCTTCGAGGGTCAGATGGTGTACAC
AGTGAGGCTGCAGTGCGGCCGGCAGCTGTGGCGAGAGGCTCCAGTGGAGG
CGGATATTGTGAGTTCCGTTCCCGAGTCTGGCACAGCGGCGGCGCATGGC
TATGCCCGTGAGTCTGGCATTGAATTTGCCGAGGTTCTCTGCAGGAATCG
CTACGTGGGACGGACGTTTATTCAACCCTCTACCCGGCTGCGGCAGTTGG
GAGTAGCCAAGAAGTTCGGAGCCCTATCCGAGAACGTGGCTGGCAAGAGA
TTGGTCCTGATAGACGATTCCATTGTGCGCGGCAACACCATTGGACCAAT
AATCAAGCTGCTACGGGATGCAGGCGCCCGGGAGGTGCACATCCGCATTG
CCAGCCCACCGCTGCAGTACCCATGCTATATGGGTATAAATATTCCAACT
CGAGAGGAATTGATTGCCAACAAGCTGAACCCCGACCAACTAGCTAGGCA
TGTGGGCGCCGACAGTCTGGCTTATCTTAGTGTGGAGGGACTAGTGGAGG
CTGTCCAACTAAAGCACCGCGATGCAGGCGATAGTAAATCCAAGGGAACG
GGCCACTGCACCGCCTGTCTCACTGGTGAATATCCCGGTGGGCTGCCCGA
TGAGTTGAGCTGGTGATACCGATTGAAGCTCATAAGTGCCAAAAGACGAA
AAAGGCTTTTGGAAACCAGTTTTGCACGCAATTGCCCACTACGAAATAAC
AAAAATTGCAGTATAAATAGCCATAGAGGGCTCGGAATTACTGTCACAAA
TTTTGCATTTAGTTTATCTAGCATTACAGCCCACCCATTCCTATTTACAC
TCTACCTTATTAGATCTTAAGTAAGCAGCCCACGTGCTTCCCCAAGCTAA
AAGACACCGATTTATGTCTGGTTTTGCCTCTGGAACTTTACTCATAGTAC
AAAATACATAACTCTTTGTTGCCCATCTTGAATATCACTAAAATTTGTTG
TTTGCAAATGCCAATAATAAAGACACTTAGACTATTGAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA

LD42113.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
Prat-RA 2208 Prat-RA 112..2199 1..2088 10440 100 Plus
Prat.a 2151 Prat.a 58..2142 1..2088 10370 99.8 Plus
Prat2-RB 2177 Prat2-RB 830..1169 501..840 545 77.3 Plus
Prat2-RB 2177 Prat2-RB 560..760 231..431 450 81.5 Plus
Prat2-RB 2177 Prat2-RB 1206..1431 877..1102 440 79.6 Plus
Prat2-RB 2177 Prat2-RB 1698..1852 1369..1523 325 80.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3735634..3737655 2087..66 10080 99.9 Minus
chr3L 24539361 chr3L 6904510..6905836 1607..281 1745 75.4 Minus
chr3R 27901430 chr3R 3737730..3737797 68..1 340 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7909597..7911619 2088..66 10115 100 Minus
3L 28110227 3L 6912200..6913526 1607..281 1760 75.5 Minus
3R 32079331 3R 7911694..7911761 68..1 340 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7650428..7652450 2088..66 10115 100 Minus
3L 28103327 3L 6906067..6906406 840..501 545 77.3 Minus
3L 28103327 3L 6905805..6906030 1102..877 440 79.6 Minus
3L 28103327 3L 6906476..6906626 431..281 380 83.4 Minus
3R 31820162 3R 7652525..7652592 68..1 340 100 Minus
3L 28103327 3L 6905384..6905538 1523..1369 325 80.6 Minus
Blast to na_te.dros performed on 2019-03-15 19:46:15 has no hits.

LD42113.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:47:10 Download gff for LD42113.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3735634..3737652 69..2087 99 <- Minus
chr3R 3737730..3737797 1..68 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:24:44 Download gff for LD42113.complete
Subject Subject Range Query Range Percent Splice Strand
Prat-RA 1..1641 76..1716 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:32:43 Download gff for LD42113.complete
Subject Subject Range Query Range Percent Splice Strand
Prat-RB 1..1641 76..1716 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:01:47 Download gff for LD42113.complete
Subject Subject Range Query Range Percent Splice Strand
Prat-RA 1..1641 76..1716 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:21 Download gff for LD42113.complete
Subject Subject Range Query Range Percent Splice Strand
Prat-RA 1..1641 76..1716 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:15 Download gff for LD42113.complete
Subject Subject Range Query Range Percent Splice Strand
Prat-RA 1..1641 76..1716 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:11:33 Download gff for LD42113.complete
Subject Subject Range Query Range Percent Splice Strand
Prat-RA 19..2105 1..2087 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:32:43 Download gff for LD42113.complete
Subject Subject Range Query Range Percent Splice Strand
Prat-RB 19..2105 1..2087 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:47 Download gff for LD42113.complete
Subject Subject Range Query Range Percent Splice Strand
Prat-RB 19..2105 1..2087 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:21 Download gff for LD42113.complete
Subject Subject Range Query Range Percent Splice Strand
Prat-RA 19..2105 1..2087 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:15 Download gff for LD42113.complete
Subject Subject Range Query Range Percent Splice Strand
Prat-RB 19..2105 1..2087 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:47:10 Download gff for LD42113.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7909598..7911616 69..2087 100 <- Minus
3R 7911694..7911761 1..68 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:47:10 Download gff for LD42113.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7909598..7911616 69..2087 100 <- Minus
3R 7911694..7911761 1..68 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:47:10 Download gff for LD42113.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7909598..7911616 69..2087 100 <- Minus
3R 7911694..7911761 1..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:47 Download gff for LD42113.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3735320..3737338 69..2087 100 <- Minus
arm_3R 3737416..3737483 1..68 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:37:01 Download gff for LD42113.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7650429..7652447 69..2087 100 <- Minus
3R 7652525..7652592 1..68 100   Minus

LD42113.pep Sequence

Translation from 75 to 1715

> LD42113.pep
MSAPQQQQQSQQKQQQHVRVVEQQQVEPAEAVTSSMESESISASKELTGL
THECGVFGAIACGDWPTQMDIAHVICLGLVALQHRGQESAGIATSEGKCS
KNFNVHKGMGMISTLFNDDSMKKLRGNLGIGHTRYSTAGGSGVVNCQPFE
VHTTHGALALAHNGELVNNESLRREVLARGVGLSTHSDSELIAQSLCCAP
EDVSELDGPNWPARIRHFMMLAPLSYSLVIMLKDKIYAVRDTYGNRPLCI
GKIVPINAGHGNNLDTPADGWVVSSESCGFLSIGARYVREVEPGEIVELS
RSGYRTVDIVERPDFKRMAFCIFEYVYFARGDSIFEGQMVYTVRLQCGRQ
LWREAPVEADIVSSVPESGTAAAHGYARESGIEFAEVLCRNRYVGRTFIQ
PSTRLRQLGVAKKFGALSENVAGKRLVLIDDSIVRGNTIGPIIKLLRDAG
AREVHIRIASPPLQYPCYMGINIPTREELIANKLNPDQLARHVGADSLAY
LSVEGLVEAVQLKHRDAGDSKSKGTGHCTACLTGEYPGGLPDELSW*

LD42113.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16846-PA 546 GF16846-PA 3..546 11..546 2606 91 Plus
Dana\GF10885-PA 544 GF10885-PA 47..544 46..546 2284 83.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24862-PA 543 GG24862-PA 1..543 1..546 2810 96.3 Plus
Dere\GG15019-PA 546 GG15019-PA 51..546 48..546 2282 84.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19023-PA 542 GH19023-PA 12..542 11..546 2507 88 Plus
Dgri\GH16106-PA 546 GH16106-PA 48..546 45..546 2239 82.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
Prat-PB 546 CG2867-PB 1..546 1..546 2848 100 Plus
Prat-PA 546 CG2867-PA 1..546 1..546 2848 100 Plus
Prat2-PB 547 CG10078-PB 49..547 45..546 2212 83.5 Plus
Prat2-PA 470 CG10078-PA 1..470 74..546 2097 84.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22836-PA 543 GI22836-PA 17..543 17..546 2516 89.3 Plus
Dmoj\GI12370-PA 546 GI12370-PA 50..546 47..546 2262 83.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12141-PA 415 GL12141-PA 6..415 13..418 1939 88.6 Plus
Dper\GL13231-PA 699 GL13231-PA 50..296 48..294 1142 83.4 Plus
Dper\GL12142-PA 84 GL12142-PA 1..84 469..546 322 79.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15494-PB 509 GA15494-PB 1..509 44..546 2548 93.9 Plus
Dpse\GA10055-PA 545 GA10055-PA 30..545 28..546 2275 80.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10447-PA 547 GM10447-PA 1..547 1..546 2895 99.1 Plus
Dsec\GM13811-PA 547 GM13811-PA 49..547 45..546 2281 83.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19452-PA 547 GD19452-PA 1..547 1..546 2813 96.7 Plus
Dsim\GD13106-PA 547 GD13106-PA 49..547 45..546 2283 83.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Prat-PA 544 GJ24696-PA 22..544 17..546 2507 89.5 Plus
Dvir\Prat2-PA 543 GJ12264-PA 47..543 47..546 2270 83.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11050-PA 542 GK11050-PA 27..542 33..546 2540 91.3 Plus
Dwil\GK12572-PA 636 GK12572-PA 139..636 46..546 2269 83.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25762-PA 543 GE25762-PA 1..543 1..546 2827 96.9 Plus
Dyak\GE20462-PA 546 GE20462-PA 48..546 45..546 2278 83.7 Plus

LD42113.hyp Sequence

Translation from 75 to 1715

> LD42113.hyp
MSAPQQQQQSQQKQQQHVRVVEQQQVEPAEAVTSSMESESISASKELTGL
THECGVFGAIACGDWPTQMDIAHVICLGLVALQHRGQESAGIATSEGKCS
KNFNVHKGMGMISTLFNDDSMKKLRGNLGIGHTRYSTAGGSGVVNCQPFE
VHTTHGALALAHNGELVNNESLRREVLARGVGLSTHSDSELIAQSLCCAP
EDVSELDGPNWPARIRHFMMLAPLSYSLVIMLKDKIYAVRDTYGNRPLCI
GKIVPINAGHGNNLDTPADGWVVSSESCGFLSIGARYVREVEPGEIVELS
RSGYRTVDIVERPDFKRMAFCIFEYVYFARGDSIFEGQMVYTVRLQCGRQ
LWREAPVEADIVSSVPESGTAAAHGYARESGIEFAEVLCRNRYVGRTFIQ
PSTRLRQLGVAKKFGALSENVAGKRLVLIDDSIVRGNTIGPIIKLLRDAG
AREVHIRIASPPLQYPCYMGINIPTREELIANKLNPDQLARHVGADSLAY
LSVEGLVEAVQLKHRDAGDSKSKGTGHCTACLTGEYPGGLPDELSW*

LD42113.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
Prat-PB 546 CG2867-PB 1..546 1..546 2848 100 Plus
Prat-PA 546 CG2867-PA 1..546 1..546 2848 100 Plus
Prat2-PB 547 CG10078-PB 49..547 45..546 2212 83.5 Plus
Prat2-PA 470 CG10078-PA 1..470 74..546 2097 84.4 Plus