BDGP Sequence Production Resources |
Search the DGRC for LD42113
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 421 |
Well: | 13 |
Vector: | pOT2 |
Associated Gene/Transcript | Prat-RA |
Protein status: | LD42113.pep: gold |
Preliminary Size: | 2161 |
Sequenced Size: | 2127 |
Gene | Date | Evidence |
---|---|---|
CG2867 | 2001-01-01 | Release 2 assignment |
CG2867 | 2001-11-09 | Blastp of sequenced clone |
CG2867 | 2003-01-01 | Sim4 clustering to Release 3 |
Prat | 2008-04-29 | Release 5.5 accounting |
Prat | 2008-08-15 | Release 5.9 accounting |
Prat | 2008-12-18 | 5.12 accounting |
2127 bp (2127 high quality bases) assembled on 2001-11-09
GenBank Submission: AY069652
> LD42113.complete AAAAACTGAGCTGCGCGTGCGAGCGTGCGAGGATTTTTCTTGTATAAAAC CGTTGCGTAAATCAGCAGCAGCAACATGTCAGCGCCACAGCAACAACAAC AGTCGCAGCAGAAGCAACAACAACATGTGCGCGTGGTCGAGCAACAACAG GTGGAACCAGCTGAGGCGGTGACCTCCAGCATGGAATCGGAATCCATCTC GGCCAGCAAGGAGCTAACCGGTTTGACGCACGAGTGCGGCGTTTTCGGGG CAATCGCTTGCGGAGATTGGCCCACCCAAATGGACATTGCACACGTGATC TGTTTGGGGCTGGTGGCACTGCAGCATCGTGGGCAGGAGTCTGCGGGCAT AGCGACCAGCGAGGGAAAGTGCTCCAAGAACTTCAACGTGCACAAGGGCA TGGGTATGATCAGCACCCTGTTCAACGACGACTCCATGAAGAAGCTTCGT GGCAACCTGGGCATCGGTCATACACGCTACTCGACCGCTGGCGGATCCGG AGTGGTTAACTGTCAGCCCTTTGAGGTACATACGACACATGGAGCATTGG CCCTGGCCCACAATGGTGAGCTTGTTAACAACGAATCTCTAAGAAGGGAG GTTTTGGCCAGAGGCGTGGGCTTATCCACGCACAGCGACAGTGAGTTGAT CGCCCAGTCGTTGTGCTGCGCCCCGGAGGATGTTTCCGAACTGGATGGAC CCAACTGGCCAGCTAGGATCAGGCATTTCATGATGCTGGCGCCACTCTCC TACTCGCTGGTCATCATGCTAAAGGACAAAATCTACGCCGTGAGGGACAC CTATGGAAATAGGCCGCTATGCATTGGCAAGATAGTGCCCATCAATGCTG GGCACGGAAATAACTTAGACACACCTGCCGATGGTTGGGTGGTGTCCAGT GAGAGCTGTGGCTTCCTGTCGATCGGTGCCAGATACGTCCGCGAAGTGGA GCCTGGAGAGATAGTGGAGCTGTCGCGAAGTGGCTACCGCACGGTGGACA TTGTGGAAAGACCCGACTTCAAGCGCATGGCCTTTTGTATATTTGAGTAC GTTTACTTCGCCCGCGGAGACAGCATCTTCGAGGGTCAGATGGTGTACAC AGTGAGGCTGCAGTGCGGCCGGCAGCTGTGGCGAGAGGCTCCAGTGGAGG CGGATATTGTGAGTTCCGTTCCCGAGTCTGGCACAGCGGCGGCGCATGGC TATGCCCGTGAGTCTGGCATTGAATTTGCCGAGGTTCTCTGCAGGAATCG CTACGTGGGACGGACGTTTATTCAACCCTCTACCCGGCTGCGGCAGTTGG GAGTAGCCAAGAAGTTCGGAGCCCTATCCGAGAACGTGGCTGGCAAGAGA TTGGTCCTGATAGACGATTCCATTGTGCGCGGCAACACCATTGGACCAAT AATCAAGCTGCTACGGGATGCAGGCGCCCGGGAGGTGCACATCCGCATTG CCAGCCCACCGCTGCAGTACCCATGCTATATGGGTATAAATATTCCAACT CGAGAGGAATTGATTGCCAACAAGCTGAACCCCGACCAACTAGCTAGGCA TGTGGGCGCCGACAGTCTGGCTTATCTTAGTGTGGAGGGACTAGTGGAGG CTGTCCAACTAAAGCACCGCGATGCAGGCGATAGTAAATCCAAGGGAACG GGCCACTGCACCGCCTGTCTCACTGGTGAATATCCCGGTGGGCTGCCCGA TGAGTTGAGCTGGTGATACCGATTGAAGCTCATAAGTGCCAAAAGACGAA AAAGGCTTTTGGAAACCAGTTTTGCACGCAATTGCCCACTACGAAATAAC AAAAATTGCAGTATAAATAGCCATAGAGGGCTCGGAATTACTGTCACAAA TTTTGCATTTAGTTTATCTAGCATTACAGCCCACCCATTCCTATTTACAC TCTACCTTATTAGATCTTAAGTAAGCAGCCCACGTGCTTCCCCAAGCTAA AAGACACCGATTTATGTCTGGTTTTGCCTCTGGAACTTTACTCATAGTAC AAAATACATAACTCTTTGTTGCCCATCTTGAATATCACTAAAATTTGTTG TTTGCAAATGCCAATAATAAAGACACTTAGACTATTGAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Prat-RA | 2208 | Prat-RA | 112..2199 | 1..2088 | 10440 | 100 | Plus |
Prat.a | 2151 | Prat.a | 58..2142 | 1..2088 | 10370 | 99.8 | Plus |
Prat2-RB | 2177 | Prat2-RB | 830..1169 | 501..840 | 545 | 77.3 | Plus |
Prat2-RB | 2177 | Prat2-RB | 560..760 | 231..431 | 450 | 81.5 | Plus |
Prat2-RB | 2177 | Prat2-RB | 1206..1431 | 877..1102 | 440 | 79.6 | Plus |
Prat2-RB | 2177 | Prat2-RB | 1698..1852 | 1369..1523 | 325 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 3735634..3737655 | 2087..66 | 10080 | 99.9 | Minus |
chr3L | 24539361 | chr3L | 6904510..6905836 | 1607..281 | 1745 | 75.4 | Minus |
chr3R | 27901430 | chr3R | 3737730..3737797 | 68..1 | 340 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 7909597..7911619 | 2088..66 | 10115 | 100 | Minus |
3L | 28110227 | 3L | 6912200..6913526 | 1607..281 | 1760 | 75.5 | Minus |
3R | 32079331 | 3R | 7911694..7911761 | 68..1 | 340 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 7650428..7652450 | 2088..66 | 10115 | 100 | Minus |
3L | 28103327 | 3L | 6906067..6906406 | 840..501 | 545 | 77.3 | Minus |
3L | 28103327 | 3L | 6905805..6906030 | 1102..877 | 440 | 79.6 | Minus |
3L | 28103327 | 3L | 6906476..6906626 | 431..281 | 380 | 83.4 | Minus |
3R | 31820162 | 3R | 7652525..7652592 | 68..1 | 340 | 100 | Minus |
3L | 28103327 | 3L | 6905384..6905538 | 1523..1369 | 325 | 80.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 3735634..3737652 | 69..2087 | 99 | <- | Minus |
chr3R | 3737730..3737797 | 1..68 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prat-RA | 1..1641 | 76..1716 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prat-RB | 1..1641 | 76..1716 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prat-RA | 1..1641 | 76..1716 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prat-RA | 1..1641 | 76..1716 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prat-RA | 1..1641 | 76..1716 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prat-RA | 19..2105 | 1..2087 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prat-RB | 19..2105 | 1..2087 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prat-RB | 19..2105 | 1..2087 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prat-RA | 19..2105 | 1..2087 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prat-RB | 19..2105 | 1..2087 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7909598..7911616 | 69..2087 | 100 | <- | Minus |
3R | 7911694..7911761 | 1..68 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7909598..7911616 | 69..2087 | 100 | <- | Minus |
3R | 7911694..7911761 | 1..68 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7909598..7911616 | 69..2087 | 100 | <- | Minus |
3R | 7911694..7911761 | 1..68 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 3735320..3737338 | 69..2087 | 100 | <- | Minus |
arm_3R | 3737416..3737483 | 1..68 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7650429..7652447 | 69..2087 | 100 | <- | Minus |
3R | 7652525..7652592 | 1..68 | 100 | Minus |
Translation from 75 to 1715
> LD42113.pep MSAPQQQQQSQQKQQQHVRVVEQQQVEPAEAVTSSMESESISASKELTGL THECGVFGAIACGDWPTQMDIAHVICLGLVALQHRGQESAGIATSEGKCS KNFNVHKGMGMISTLFNDDSMKKLRGNLGIGHTRYSTAGGSGVVNCQPFE VHTTHGALALAHNGELVNNESLRREVLARGVGLSTHSDSELIAQSLCCAP EDVSELDGPNWPARIRHFMMLAPLSYSLVIMLKDKIYAVRDTYGNRPLCI GKIVPINAGHGNNLDTPADGWVVSSESCGFLSIGARYVREVEPGEIVELS RSGYRTVDIVERPDFKRMAFCIFEYVYFARGDSIFEGQMVYTVRLQCGRQ LWREAPVEADIVSSVPESGTAAAHGYARESGIEFAEVLCRNRYVGRTFIQ PSTRLRQLGVAKKFGALSENVAGKRLVLIDDSIVRGNTIGPIIKLLRDAG AREVHIRIASPPLQYPCYMGINIPTREELIANKLNPDQLARHVGADSLAY LSVEGLVEAVQLKHRDAGDSKSKGTGHCTACLTGEYPGGLPDELSW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16846-PA | 546 | GF16846-PA | 3..546 | 11..546 | 2606 | 91 | Plus |
Dana\GF10885-PA | 544 | GF10885-PA | 47..544 | 46..546 | 2284 | 83.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24862-PA | 543 | GG24862-PA | 1..543 | 1..546 | 2810 | 96.3 | Plus |
Dere\GG15019-PA | 546 | GG15019-PA | 51..546 | 48..546 | 2282 | 84.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19023-PA | 542 | GH19023-PA | 12..542 | 11..546 | 2507 | 88 | Plus |
Dgri\GH16106-PA | 546 | GH16106-PA | 48..546 | 45..546 | 2239 | 82.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Prat-PB | 546 | CG2867-PB | 1..546 | 1..546 | 2848 | 100 | Plus |
Prat-PA | 546 | CG2867-PA | 1..546 | 1..546 | 2848 | 100 | Plus |
Prat2-PB | 547 | CG10078-PB | 49..547 | 45..546 | 2212 | 83.5 | Plus |
Prat2-PA | 470 | CG10078-PA | 1..470 | 74..546 | 2097 | 84.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22836-PA | 543 | GI22836-PA | 17..543 | 17..546 | 2516 | 89.3 | Plus |
Dmoj\GI12370-PA | 546 | GI12370-PA | 50..546 | 47..546 | 2262 | 83.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12141-PA | 415 | GL12141-PA | 6..415 | 13..418 | 1939 | 88.6 | Plus |
Dper\GL13231-PA | 699 | GL13231-PA | 50..296 | 48..294 | 1142 | 83.4 | Plus |
Dper\GL12142-PA | 84 | GL12142-PA | 1..84 | 469..546 | 322 | 79.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15494-PB | 509 | GA15494-PB | 1..509 | 44..546 | 2548 | 93.9 | Plus |
Dpse\GA10055-PA | 545 | GA10055-PA | 30..545 | 28..546 | 2275 | 80.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10447-PA | 547 | GM10447-PA | 1..547 | 1..546 | 2895 | 99.1 | Plus |
Dsec\GM13811-PA | 547 | GM13811-PA | 49..547 | 45..546 | 2281 | 83.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19452-PA | 547 | GD19452-PA | 1..547 | 1..546 | 2813 | 96.7 | Plus |
Dsim\GD13106-PA | 547 | GD13106-PA | 49..547 | 45..546 | 2283 | 83.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Prat-PA | 544 | GJ24696-PA | 22..544 | 17..546 | 2507 | 89.5 | Plus |
Dvir\Prat2-PA | 543 | GJ12264-PA | 47..543 | 47..546 | 2270 | 83.6 | Plus |
Translation from 75 to 1715
> LD42113.hyp MSAPQQQQQSQQKQQQHVRVVEQQQVEPAEAVTSSMESESISASKELTGL THECGVFGAIACGDWPTQMDIAHVICLGLVALQHRGQESAGIATSEGKCS KNFNVHKGMGMISTLFNDDSMKKLRGNLGIGHTRYSTAGGSGVVNCQPFE VHTTHGALALAHNGELVNNESLRREVLARGVGLSTHSDSELIAQSLCCAP EDVSELDGPNWPARIRHFMMLAPLSYSLVIMLKDKIYAVRDTYGNRPLCI GKIVPINAGHGNNLDTPADGWVVSSESCGFLSIGARYVREVEPGEIVELS RSGYRTVDIVERPDFKRMAFCIFEYVYFARGDSIFEGQMVYTVRLQCGRQ LWREAPVEADIVSSVPESGTAAAHGYARESGIEFAEVLCRNRYVGRTFIQ PSTRLRQLGVAKKFGALSENVAGKRLVLIDDSIVRGNTIGPIIKLLRDAG AREVHIRIASPPLQYPCYMGINIPTREELIANKLNPDQLARHVGADSLAY LSVEGLVEAVQLKHRDAGDSKSKGTGHCTACLTGEYPGGLPDELSW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Prat-PB | 546 | CG2867-PB | 1..546 | 1..546 | 2848 | 100 | Plus |
Prat-PA | 546 | CG2867-PA | 1..546 | 1..546 | 2848 | 100 | Plus |
Prat2-PB | 547 | CG10078-PB | 49..547 | 45..546 | 2212 | 83.5 | Plus |
Prat2-PA | 470 | CG10078-PA | 1..470 | 74..546 | 2097 | 84.4 | Plus |