Clone LD42227 Report

Search the DGRC for LD42227

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:422
Well:27
Vector:pOT2
Associated Gene/TranscriptCG11596-RA
Protein status:LD42227.pep: gold
Preliminary Size:1900
Sequenced Size:1750

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11596 2001-01-01 Release 2 assignment
CG11596 2001-07-04 Blastp of sequenced clone
CG11596 2003-01-01 Sim4 clustering to Release 3
CG11596 2008-04-29 Release 5.5 accounting
CG11596 2008-08-15 Release 5.9 accounting
CG11596 2008-12-18 5.12 accounting

Clone Sequence Records

LD42227.complete Sequence

1750 bp (1750 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051951

> LD42227.complete
AGACGACAGCAGAATGCAAAGGCAACGGATTACTCCCAGGATTTAAATAG
CATAGATTATCGTTGAAACCGCTGACGACGCGCCCAGATGAGCTCCATGG
ACTGCGCCACGTTCCCAATGCATCCTAAAATGGACGAGCAACTGGCCCGA
ACCTTCGTCATCAACGAGGAGGAGGAGGAGAAGCACATTCAGAAGGTGCA
GAACGCCTTCCTTTACTATGGGCCATATGCGTGTCAGCGGCTAAAGCGCT
CCATGGATTACCTGAACAGCCTGTCTGGCGAGGACCAAATCATGCTAGCC
AAGTACCGAGGGCATCTGGAGTGCGTGCGCACGTGCATCGATCGCAACCA
GGCGGTTATCCGGGAAATATTGCGCGGGCGTGTCCTCTATCCGACGGATG
AGGCGACTGGTGATCCCTCGGAGTTTGACGAGCCGCCGCCAAATGTGCGG
CACGGTGACATGGACCAGGCCCAGTCGACGTTGAAGTTGATTGCGCGCGA
CTGGAGCACTGAAGGAGCCTTAGAACGGGAGCAATCGTATAAACCGATCA
TCGACAGCATCGTTGCGTACTTCAAGCACAGCGATTTCGAGCTGAAGGAT
ATAAAGATCCTAGTGCCGGGAGCGGGGTTGGGACGGCTCACCTACGAGCT
TGCCTGCTTGGGGTACTCGTGCGAGGGCAACGAGTTTTCCTACTTCATGC
TGATCGCCTCCAATTTTGTCCTCAACCTCTGCGACAACGAGAACAAGTAC
GTGTTATATCCGTGGGTGCACCAGTATGTGAATAACTTAAGGCGTGAGGA
TCAGGTGGCCCCCGTTCGTTTCCCAGACGTCTGCCCGCTTAAAAATCCAC
CCAAGGGCCATTTTGAAATAGCAGCTGGCGACTTTCTGGAGGTCTACAAG
ACGCCGAACGCCTACAACTGCGTGGCTACGTGCTTCTTCATCGATTGTGC
CAATAATGTTATTGACTTCATACGCACAATTTACAAAATCCTCGTGCCTG
GTGGCATTTGGGTGAATCTCGGGCCGCTGCTGTACCATTTTAGCGACGTC
AGCGGGCAAAACAGCATCGAGCCGGCTTTCGAGGACCTTTGCATTATCAT
GGAAAGCGTAGGATTCGTTATCGAGAAATCACGCACCGGCATCCGTACCA
AGTACGCACAGAACCCGTCTTCAATGAAACAGAGCGAGTACCAGAGTCTT
TTCTGGGTCTGCCGCAAGCCGGATCTATTTGAGGAGCAGCGGGGCAAACG
CAAGGCCTCCAGGGAGCCACACGATCTTATTGTGCGCGAGGACAGCGAGG
AGGAGGGGGAGCAACAGCCGGAACGAAATGAAACGGAAGAAAAACAGCAA
CTGAAACCGCTGGCCACAGCCAACTGCGAGACTGAGATAAAGGAGCAGCC
ATCGTGATAGCCATTGAACCAAACTCAACAACACATCCAAACACCACAAT
CAAGTCCAAGTGCAAACCCACCTACAGATGGCATCACGAACATCTTAATT
ACCACGTCACAGGCAAGACAGGGAATCGACACTGCAGTGCTTCGATGTTA
TAGATTACACTTTATACCTATTATTTACTCCTACACACTGTTATATATGC
CAGTTTTAATTTTTCAAAGGATGCAAATTTTAGGACAATTTCTCGCTCAT
TATGCTCATCATGCTAACTTAAATGGGAAAAGCGTCCCAACTAGGTCAAC
CAAATATATCAAAAGAAAATTTTTAAAAATTAAAAAAAAAAAAAAAAAAA

LD42227.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11596-RA 1868 CG11596-RA 37..1777 1..1741 8675 99.8 Plus
CG11596.a 1756 CG11596.a 244..1756 221..1733 7565 100 Plus
CG11596-RC 1932 CG11596-RC 567..1841 467..1741 6345 99.8 Plus
CG11596-RC 1932 CG11596-RC 50..517 1..468 2340 100 Plus
CG11596.a 1756 CG11596.a 50..245 1..196 980 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1823619..1824363 987..1731 3725 100 Plus
chrX 22417052 chrX 1823300..1823557 729..986 1290 100 Plus
chrX 22417052 chrX 1822179..1822427 221..469 1245 100 Plus
chrX 22417052 chrX 1821545..1821766 1..222 1110 100 Plus
chrX 22417052 chrX 1823090..1823230 588..728 705 100 Plus
chrX 22417052 chrX 1822896..1823016 467..587 605 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1929773..1930527 987..1741 3745 99.7 Plus
X 23542271 X 1929454..1929711 729..986 1290 100 Plus
X 23542271 X 1928333..1928581 221..469 1245 100 Plus
X 23542271 X 1927699..1927920 1..222 1110 100 Plus
X 23542271 X 1929244..1929384 588..728 705 100 Plus
X 23542271 X 1929050..1929170 467..587 605 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1937871..1938625 987..1741 3745 99.7 Plus
X 23527363 X 1937552..1937809 729..986 1290 100 Plus
X 23527363 X 1936431..1936679 221..469 1245 100 Plus
X 23527363 X 1935797..1936018 1..222 1110 100 Plus
X 23527363 X 1937342..1937482 588..728 705 100 Plus
X 23527363 X 1937148..1937268 467..587 605 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:48:10 has no hits.

LD42227.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:49:04 Download gff for LD42227.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1821545..1821765 1..221 100 -> Plus
chrX 1822180..1822426 222..468 100 -> Plus
chrX 1822898..1823016 469..587 100 -> Plus
chrX 1823090..1823230 588..728 100 -> Plus
chrX 1823300..1823557 729..986 100 -> Plus
chrX 1823619..1824363 987..1731 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:24:53 Download gff for LD42227.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 1..1320 88..1407 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:11 Download gff for LD42227.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 1..1320 88..1407 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:13:00 Download gff for LD42227.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 1..1320 88..1407 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:47:37 Download gff for LD42227.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 1..1320 88..1407 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:41:20 Download gff for LD42227.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 1..1320 88..1407 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:10:18 Download gff for LD42227.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 1..1731 1..1731 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:11 Download gff for LD42227.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 1..1731 1..1731 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:13:00 Download gff for LD42227.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 17..1747 1..1731 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:47:37 Download gff for LD42227.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 1..1731 1..1731 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:41:20 Download gff for LD42227.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 17..1747 1..1731 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:49:04 Download gff for LD42227.complete
Subject Subject Range Query Range Percent Splice Strand
X 1927699..1927919 1..221 100 -> Plus
X 1928334..1928580 222..468 100 -> Plus
X 1929052..1929170 469..587 100 -> Plus
X 1929244..1929384 588..728 100 -> Plus
X 1929454..1929711 729..986 100 -> Plus
X 1929773..1930517 987..1731 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:49:04 Download gff for LD42227.complete
Subject Subject Range Query Range Percent Splice Strand
X 1927699..1927919 1..221 100 -> Plus
X 1928334..1928580 222..468 100 -> Plus
X 1929052..1929170 469..587 100 -> Plus
X 1929244..1929384 588..728 100 -> Plus
X 1929454..1929711 729..986 100 -> Plus
X 1929773..1930517 987..1731 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:49:04 Download gff for LD42227.complete
Subject Subject Range Query Range Percent Splice Strand
X 1927699..1927919 1..221 100 -> Plus
X 1928334..1928580 222..468 100 -> Plus
X 1929052..1929170 469..587 100 -> Plus
X 1929244..1929384 588..728 100 -> Plus
X 1929454..1929711 729..986 100 -> Plus
X 1929773..1930517 987..1731 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:13:00 Download gff for LD42227.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1823277..1823417 588..728 100 -> Plus
arm_X 1821732..1821952 1..221 100 -> Plus
arm_X 1822367..1822613 222..468 100 -> Plus
arm_X 1823085..1823203 469..587 100 -> Plus
arm_X 1823487..1823744 729..986 100 -> Plus
arm_X 1823806..1824550 987..1731 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:25:37 Download gff for LD42227.complete
Subject Subject Range Query Range Percent Splice Strand
X 1937552..1937809 729..986 100 -> Plus
X 1935797..1936017 1..221 100 -> Plus
X 1936432..1936678 222..468 100 -> Plus
X 1937150..1937268 469..587 100 -> Plus
X 1937342..1937482 588..728 100 -> Plus
X 1937871..1938615 987..1731 100   Plus

LD42227.pep Sequence

Translation from 87 to 1406

> LD42227.pep
MSSMDCATFPMHPKMDEQLARTFVINEEEEEKHIQKVQNAFLYYGPYACQ
RLKRSMDYLNSLSGEDQIMLAKYRGHLECVRTCIDRNQAVIREILRGRVL
YPTDEATGDPSEFDEPPPNVRHGDMDQAQSTLKLIARDWSTEGALEREQS
YKPIIDSIVAYFKHSDFELKDIKILVPGAGLGRLTYELACLGYSCEGNEF
SYFMLIASNFVLNLCDNENKYVLYPWVHQYVNNLRREDQVAPVRFPDVCP
LKNPPKGHFEIAAGDFLEVYKTPNAYNCVATCFFIDCANNVIDFIRTIYK
ILVPGGIWVNLGPLLYHFSDVSGQNSIEPAFEDLCIIMESVGFVIEKSRT
GIRTKYAQNPSSMKQSEYQSLFWVCRKPDLFEEQRGKRKASREPHDLIVR
EDSEEEGEQQPERNETEEKQQLKPLATANCETEIKEQPS*

LD42227.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22187-PA 436 GF22187-PA 1..395 15..404 1898 89.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12893-PA 460 GG12893-PA 1..460 1..439 2088 90.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17892-PA 419 GH17892-PA 1..419 15..427 1522 70.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11596-PA 439 CG11596-PA 1..439 1..439 2345 100 Plus
CG11596-PC 456 CG11596-PC 1..456 1..439 2317 96.3 Plus
CG11596-PE 401 CG11596-PE 1..401 56..439 2022 95.8 Plus
CG11596-PD 401 CG11596-PD 1..401 56..439 2022 95.8 Plus
CG11596-PB 401 CG11596-PB 1..401 56..439 2022 95.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21682-PA 424 GI21682-PA 10..423 9..413 1577 72.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15251-PA 453 GL15251-PA 1..412 1..404 1816 81.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11089-PA 453 GA11089-PA 1..414 1..406 1818 81.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19182-PA 455 GM19182-PA 1..455 4..439 2276 93.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16577-PA 457 GD16577-PA 1..457 4..439 2268 93.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15861-PA 430 GJ15861-PA 10..430 9..416 1557 70.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25180-PA 443 GK25180-PA 1..431 1..427 1725 74.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16224-PA 458 GE16224-PA 1..458 1..439 2061 89.3 Plus

LD42227.hyp Sequence

Translation from 87 to 1406

> LD42227.hyp
MSSMDCATFPMHPKMDEQLARTFVINEEEEEKHIQKVQNAFLYYGPYACQ
RLKRSMDYLNSLSGEDQIMLAKYRGHLECVRTCIDRNQAVIREILRGRVL
YPTDEATGDPSEFDEPPPNVRHGDMDQAQSTLKLIARDWSTEGALEREQS
YKPIIDSIVAYFKHSDFELKDIKILVPGAGLGRLTYELACLGYSCEGNEF
SYFMLIASNFVLNLCDNENKYVLYPWVHQYVNNLRREDQVAPVRFPDVCP
LKNPPKGHFEIAAGDFLEVYKTPNAYNCVATCFFIDCANNVIDFIRTIYK
ILVPGGIWVNLGPLLYHFSDVSGQNSIEPAFEDLCIIMESVGFVIEKSRT
GIRTKYAQNPSSMKQSEYQSLFWVCRKPDLFEEQRGKRKASREPHDLIVR
EDSEEEGEQQPERNETEEKQQLKPLATANCETEIKEQPS*

LD42227.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11596-PA 439 CG11596-PA 1..439 1..439 2345 100 Plus
CG11596-PC 456 CG11596-PC 1..456 1..439 2317 96.3 Plus
CG11596-PE 401 CG11596-PE 1..401 56..439 2022 95.8 Plus
CG11596-PD 401 CG11596-PD 1..401 56..439 2022 95.8 Plus
CG11596-PB 401 CG11596-PB 1..401 56..439 2022 95.8 Plus