LD42239.complete Sequence
2771 bp (2771 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061467
> LD42239.complete
AGACCTTAAGCTCTGCTCGAGTGACCACAGAAACCTTGACACCATTGATG
GCAAAACACTTGGAACAAAGTTGTGGCGTTGCAGACTGCGACTCAGACTC
CAGTAAATCTAAAGCTCATTACCATGTGGATGCAATCAAGTGCGGCTGTT
TCTGCAACTGCAACTGCAACAGCCGTCTGACTTTTATGGCAACTCTTGCC
ACGAATGTATATTTTACTCGGCTCGCGCGTCAGACATTTGTAGATAGTTT
AAATAATTAATGAGCTTCAACGGTTGCAATTCTTATTTTCCACAATTTAC
AGCAGCTTTTTTCGGGGTTGTGTGTTAAGGGCGATGGAACGTGATGCCGC
CAGCTGGGGCATAAATTTGGGTGTCCTTTGAGGTACTTGTGCCGACACTG
AAAAAAAAGGATACGTAGATAGAAAGAAATAAGTCTATAAACTTACTAAA
TATATTTCAAATATTTCATTTTCCTAATTAAACAAAAAAAACATCCATGC
ATTCAGAACTTATAGTAGTTCAAAGACCATAAACCCAACTGTTTTCTCTC
AGTGCTGCTGGGCTGCAAACTTGTTCAAACTTTAGACTTTTTGTGTGAAT
TGTTCGCACGTTGACCATTCCCGCCGAGAGAAATCCTGCGCCGCAGGTCC
TGCTGGAGTCCTTGTTCTCTGGTGCACGTTAATCGCAAGTTGTCGCCCCA
ATGGGGAGGTATCCAAAAAAGCGGAAGGCAAAGGAATTGCGGTTGCATAT
TTGATTTTATAACTTTTCTTGGCCGGACACATAAAACGAGGTCATCAAGG
GATCCACCCAAAAGGATTCAATTTGATTGGATTGAATGTGTCTGAAGTCG
GCGGAGTGACGTGGTATGATTTCGGGTGGCCATATGCCCAGCCAAAAGAT
TCCCACCCATCGAAATGCCACCACCCGTGGTGCGGAATCACGTAGAACGG
CAAACGGATGTTTGGGCGCCCATTCAGCTGCATTTTAAATTATGCGATGC
GTTGGGACTTGGCTCGCAATTCGCAGATACAGATACAGATACAGATACAG
ATACCAACACGGATTCGAATTGGGATTGGGTTAAAAAAGGAACAACACAC
GGCACAGCCAGTGGAAGAATGAAATCGAAACTTATTAAATATTTAGCGAG
TGGATGAATGAGTTTACATTTTTTGCTTGACTTTATGATAATGCGCTGGC
CATAAAGCCAAAATGTAAAAAGAAGCACCCCGCAACACACACACTTGTGC
CTCCCCCCCTGACAGCAGACCCCCCATTATTTCCCACTTTAGACCACAAT
CTAAGCCCCATTGGAGACGAGCTGGAAAAACCTGCGAATCGCTTGCAAAA
TATCGATGAAATTCCGTTTGATATTTGCCAATTGCACAACAACTGCAACA
GCAACAGCAACTGCAACTTGTTTGCCCACCTGCGAGTGAATTCAGGTCTG
ATCTCAGCTGACCTTTTGTTTGTCTTGTCCGGTAATTCATAAATATTTGA
TTGCTTCAGGGGGACAAACAGGACGAAGGACACGGAAGTCCGTTGAGAAG
AGGGGGGGGAGGGGGCTCAATCGTGCTGACTGAAACAATCAACACGTTTA
AACGATTTTATTAATTTATTTACGACTCGACAGCTCCGTTTTTTAAACGG
TTTCGCATTTAAAGTTGTGGGGTGTAATATTGTTGAAATTTAATTAAAGT
GTCATTGCAGTTAATGCTTATTTATTAAAGTTTATAAGCAGTTTTTAACT
CAAAACTTAAAAAGCGAATAAGCGATTTTAGATACCCGTTCAATAGTGTA
CAAAAAAAAAATAAACATGTAGAGCTTGTTGTAAGCTTCGCAAATCGCAT
AAATTAGCGAGGATTCAGGAGTAAACACTCCAAGGATATGAAATGGAAGG
AAGGGAGACTCCATAAAATGTTTCACATATTGTACTAGATATTCATGGAA
AATAATGCAATAAAAATTCACAGCCACAGACGGCGACACCGAAATAAAGA
CAAGCCACCAAGGTGTCTTAGATGCCGCGTAATCCCTGGAAAACCAAACC
GAAACACACACAGGACATGCGGAATCTCAAGTGGGTTGGGAAGGGGGGTG
GTGGTACAAATTTTTTACGCTTTTTTATTCCATCTGGAGATTTGCACTTG
AGCGAAAGGCGGGCGACAAAAACAGCAACGACGACACTTTGGTTACGCTC
CAGCGTAACACTTAACCGCTCTGAATGTGAATGTTCGTTTTTTTTTCTTT
TTTGCGGCCCGGTTGGGTGGATTATTCAGCGGCAATCCGCCGAGCCACTT
GCCGCACCTCCACTTGCCACTTGCCACTTGCCCCATCATGGTTGTGACTT
GAACTGGAATTTGAAACAACAGCCGGCGCATGTAAAAATGTTTTGCAAAA
TGCCCAAGAGATGCACATAAAATATTTAACAGACATGCCCTACAACTTTT
TCCCAGCCATGTGGGTGACTCCTCCTGGTTGGTTAATCATTTGTTTCCTT
TTCCCCAGCCTCGAGTGCAATAATCTGTCTCGGCTCCATTTAAACGGGGA
TAACCAACAAGTTCTTAAAAACCCAACAGCCAAACAACTTTCTTAACAAA
CAGCAATAATAATATAATGATGAACAACAGGAGAGTTTTCGAAGGAAAAC
GTCAAGGAAACTTTTCCTGCAGTCAGCAGGCCCAAGCGACACATTTCAAT
TGCCAACTTCTGATCTCTAGAGGCTTCAGAAAGTTTAAGAACATTTGTTC
AAAAAAAAAAAAAAAAAAAAA
LD42239.complete Blast Records
Blast to MB8.fasta performed on 2010-07-15 20:13:21 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:30:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chr2R | 21145070 | chr2R | 17375619..17378346 | 2750..1 | 12970 | 98.7 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21489079..21491849 | 2771..1 | 13810 | 99.9 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25260384 | 2R | 21490278..21493048 | 2771..1 | 13810 | 99.8 | Minus |
Blast to na_te.dros performed 2019-03-15 22:30:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 533..564 | 1386..1417 | 124 | 87.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3281..3311 | 1386..1416 | 119 | 87.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2394 | 1387..1417 | 119 | 87.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2406 | 1387..1417 | 119 | 87.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6821 | 1387..1417 | 119 | 87.1 | Plus |
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 1790..1900 | 553..441 | 118 | 59.6 | Minus |
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 9672..9782 | 553..441 | 118 | 59.6 | Minus |
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 459..515 | 1480..1538 | 118 | 73.3 | Plus |
| Tabor | 7345 | Tabor TABOR 7345bp | 3401..3474 | 2556..2629 | 118 | 62.2 | Plus |
LD42239.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:31:56 Download gff for
LD42239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chr2R | 17375619..17376950 | 1418..2750 | 99 | == | Minus |
| chr2R | 17376951..17378346 | 1..1399 | 97 | | Minus |
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 20:22:37 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 20:22:37 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:56 Download gff for
LD42239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21489100..21491849 | 1..2750 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:56 Download gff for
LD42239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21489100..21491849 | 1..2750 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:56 Download gff for
LD42239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21489100..21491849 | 1..2750 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:22:57 Download gff for
LD42239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17376605..17379354 | 1..2750 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:22:57 Download gff for
LD42239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17376605..17379354 | 1..2750 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:22:57 Download gff for
LD42239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17376605..17379354 | 1..2750 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:59:44 Download gff for
LD42239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21490299..21493048 | 1..2750 | 100 | | Minus |
LD42239.pep Sequence
Translation from 2021 to 2419
> LD42239.pep
MPRNPWKTKPKHTQDMRNLKWVGKGGGGTNFLRFFIPSGDLHLSERRATK
TATTTLWLRSSVTLNRSECECSFFFLFCGPVGWIIQRQSAEPLAAPPLAT
CHLPHHGCDLNWNLKQQPAHVKMFCKMPKRCT*
Sequence LD42239.pep has no blast hits.
LD42239.hyp Sequence
Translation from 2021 to 2419
> LD42239.hyp
MPRNPWKTKPKHTQDMRNLKWVGKGGGGTNFLRFFIPSGDLHLSERRATK
TATTTLWLRSSVTLNRSECECSFFFLFCGPVGWIIQRQSAEPLAAPPLAT
CHLPHHGCDLNWNLKQQPAHVKMFCKMPKRCT*
Sequence LD42239.hyp has no blast hits.
