Clone LD42284 Report

Search the DGRC for LD42284

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:422
Well:84
Vector:pOT2
Associated Gene/TranscriptElba3-RA
Protein status:LD42284.pep: gold
Preliminary Size:1511
Sequenced Size:1449

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15634 2001-01-01 Release 2 assignment
CG15634 2001-07-04 Blastp of sequenced clone
CG15634 2003-01-01 Sim4 clustering to Release 3
CG15634 2008-04-29 Release 5.5 accounting
CG15634 2008-08-15 Release 5.9 accounting
CG15634 2008-12-18 5.12 accounting

Clone Sequence Records

LD42284.complete Sequence

1449 bp (1449 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051954

> LD42284.complete
AACTCTTCACCTATCAAGACATTCAAACAAGACGCGTAGAAAAGAACCAA
AGCCAAGCCAATTATATCAATTAAAACTTTGTTCAAATCTTTTCCGAACA
TATTTAAAACACATCCGCCATCATGAGCAACATCAGCAACGACAGTGGAT
TGGATGACTCCGCGAACAGTGGAGCCGTTGTCAGCGCCAATGGACCATTG
GCAGCGACTCGGTTATCCTGGTTCCTGGCCGAAGTCGATGACGGCTTGAT
GAAGGATGGGAAGCCAAATGGTCGACGCCGTCTCTGCGTTCTCCATTCGA
TGGAACTCCTAGAGTCAGATGTTTCAGACAAATACATGACCCGATTCGTA
GAATTCCGGGTCAATGGAATGGTGCTGGAGGCGAAACTCATACTGGCAGC
GGATGAGAGGCGCCTGGTGGATGCAGCATTGCTGTCCATGAGCAAGGAGG
AGAGGGAAGATGCCGGCGGCCAGCAACTGTTGGTCCAGTACACCGAGAAT
GAAAAGGCGGGCGAGCGCCTCATCCAGAAACTTGTTTCTCCAAACAATGT
AATGCTGCTGAGCACCAAGCCCGAGCTGAAGGGTAATCCTCTGGTGAGGT
TGGCTCCCGGCTGCATTGCCCACATCCTATATGCCTACGAAAGTCGTGAT
TATATGGAAAAGATACTACTGCACCTGAAAGCGCGAAGCTTTGATCTCGC
CTTCGATGATAATTTGGAAGCTGAACCGGAGGCCATGAATGATGACACTT
GGATGCTGGTGCAATACAGTCCCGAACCGGAGATGGTGGTATACCAGGTG
GTGCAGTACAGACAAACCGTGTGGAGGAAAGAGAATCTCTTTAAGGACGT
TATTGCCTACATGCAACTTCCTGGTAGCGACATCGTCCTCCAGGCGGTGG
TCATCAGCTATGGCCAGGACAAAGAGGTCCAGGACGCGAAGTATGAGGAG
TTGCAACGATTCTCTTTTGATATTGACTTTCCACTGCCCGAAGAACTGGA
GAAGCACCCCGATCACATGACGTCCACCGCCCTCTTCTCGCGAACCAGCT
TGTATCAGAAGGCGGAGCAGCGGGACACTACTGGAGAGCACAGGGAGTTG
CGAAAAAGTCTGGAACAGATGAGCGAAAAGGCGCAGGGCGAGGCCCAAAT
GATCATAGATGCCTTCGACATGGTGGACAATATCAACAAGAATCTGCAGA
GTCGTTTGTCCGGAGAGGTGCGATCGGTAGTGGAGGTCACATCCGGAGAC
GAACTTCATTAGTTGGCAAACACATCACATTTTCTTTATACATATATAGT
CTACTAAGTTTCGTTGAAAGTTTAAAACTTAAATGGTAAATATTATTAGG
CTAGAATTAAATACTAATTGTAAACTATATGTTTAGGTAATTTGAATAAA
TATATAAAGATCTGCAAATGATAAACGTATAAAAAAAAAAAAAAAAAAA

LD42284.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG15634-RA 1444 CG15634-RA 15..1444 1..1430 7150 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 4686653..4688082 1..1430 7150 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4687527..4688959 1..1433 7165 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4687527..4688959 1..1433 7165 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:12:25 has no hits.

LD42284.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:13:39 Download gff for LD42284.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 4686653..4688082 1..1430 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:24:59 Download gff for LD42284.complete
Subject Subject Range Query Range Percent Splice Strand
CG15634-RA 1..1140 123..1262 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:14 Download gff for LD42284.complete
Subject Subject Range Query Range Percent Splice Strand
CG15634-RA 1..1140 123..1262 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:55:10 Download gff for LD42284.complete
Subject Subject Range Query Range Percent Splice Strand
Elba3-RA 1..1140 123..1262 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:47:40 Download gff for LD42284.complete
Subject Subject Range Query Range Percent Splice Strand
CG15634-RA 1..1140 123..1262 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:28:50 Download gff for LD42284.complete
Subject Subject Range Query Range Percent Splice Strand
Elba3-RA 1..1140 123..1262 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:10:21 Download gff for LD42284.complete
Subject Subject Range Query Range Percent Splice Strand
CG15634-RA 15..1444 1..1430 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:14 Download gff for LD42284.complete
Subject Subject Range Query Range Percent Splice Strand
CG15634-RA 15..1444 1..1430 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:10 Download gff for LD42284.complete
Subject Subject Range Query Range Percent Splice Strand
Elba3-RA 17..1446 1..1430 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:47:40 Download gff for LD42284.complete
Subject Subject Range Query Range Percent Splice Strand
CG15634-RA 15..1444 1..1430 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:28:50 Download gff for LD42284.complete
Subject Subject Range Query Range Percent Splice Strand
Elba3-RA 17..1446 1..1430 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:13:39 Download gff for LD42284.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4687527..4688956 1..1430 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:13:39 Download gff for LD42284.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4687527..4688956 1..1430 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:13:39 Download gff for LD42284.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4687527..4688956 1..1430 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:10 Download gff for LD42284.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4687527..4688956 1..1430 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:25:40 Download gff for LD42284.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4687527..4688956 1..1430 100   Plus

LD42284.hyp Sequence

Translation from 122 to 1261

> LD42284.hyp
MSNISNDSGLDDSANSGAVVSANGPLAATRLSWFLAEVDDGLMKDGKPNG
RRRLCVLHSMELLESDVSDKYMTRFVEFRVNGMVLEAKLILAADERRLVD
AALLSMSKEEREDAGGQQLLVQYTENEKAGERLIQKLVSPNNVMLLSTKP
ELKGNPLVRLAPGCIAHILYAYESRDYMEKILLHLKARSFDLAFDDNLEA
EPEAMNDDTWMLVQYSPEPEMVVYQVVQYRQTVWRKENLFKDVIAYMQLP
GSDIVLQAVVISYGQDKEVQDAKYEELQRFSFDIDFPLPEELEKHPDHMT
STALFSRTSLYQKAEQRDTTGEHRELRKSLEQMSEKAQGEAQMIIDAFDM
VDNINKNLQSRLSGEVRSVVEVTSGDELH*

LD42284.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
Elba3-PA 379 CG15634-PA 1..379 1..379 1923 100 Plus

LD42284.pep Sequence

Translation from 122 to 1261

> LD42284.pep
MSNISNDSGLDDSANSGAVVSANGPLAATRLSWFLAEVDDGLMKDGKPNG
RRRLCVLHSMELLESDVSDKYMTRFVEFRVNGMVLEAKLILAADERRLVD
AALLSMSKEEREDAGGQQLLVQYTENEKAGERLIQKLVSPNNVMLLSTKP
ELKGNPLVRLAPGCIAHILYAYESRDYMEKILLHLKARSFDLAFDDNLEA
EPEAMNDDTWMLVQYSPEPEMVVYQVVQYRQTVWRKENLFKDVIAYMQLP
GSDIVLQAVVISYGQDKEVQDAKYEELQRFSFDIDFPLPEELEKHPDHMT
STALFSRTSLYQKAEQRDTTGEHRELRKSLEQMSEKAQGEAQMIIDAFDM
VDNINKNLQSRLSGEVRSVVEVTSGDELH*

LD42284.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21376-PA 377 GF21376-PA 1..377 1..379 1516 76.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25014-PA 379 GG25014-PA 1..379 1..379 1931 94.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13133-PA 380 GH13133-PA 1..380 1..379 1342 67.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
Elba3-PA 379 CG15634-PA 1..379 1..379 1923 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22837-PA 381 GI22837-PA 1..381 1..379 1348 67.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14443-PA 378 GL14443-PA 1..378 1..379 1482 76.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13863-PA 378 GA13863-PA 1..378 1..379 1478 76.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18486-PA 379 GM18486-PA 1..379 1..379 1964 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23295-PA 379 GD23295-PA 1..379 1..379 1970 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23385-PA 376 GJ23385-PA 1..376 1..379 1382 69.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23754-PA 379 GK23754-PA 1..365 1..365 1293 67.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18303-PA 379 GE18303-PA 1..379 1..379 1932 95.3 Plus