Clone LD42289 Report

Search the DGRC for LD42289

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:422
Well:89
Vector:pOT2
Associated Gene/TranscriptCG4036-RA
Protein status:LD42289.pep: gold
Preliminary Size:1118
Sequenced Size:987

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4036 2001-01-01 Release 2 assignment
CG4036 2002-06-12 Blastp of sequenced clone
CG4036 2003-01-01 Sim4 clustering to Release 3
CG4036 2008-04-29 Release 5.5 accounting
CG4036 2008-08-15 Release 5.9 accounting
CG4036 2008-12-18 5.12 accounting

Clone Sequence Records

LD42289.complete Sequence

987 bp (987 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122185

> LD42289.complete
CTTTTGCCCAATTTCAGGATGAATACAATTCGTCCTTGCGGTTGTAAGGG
CGTTCGCACCTGCTTGAGCTGCGAACAGGACTTTCATATAGCGAAGACCT
CGCTACGGGAACAATTCCAGCAACTGGAAGCATGGTCCTACTGTATCCAG
TGCGACCTTCTGCAGCGCGGTTGGGATACCAATCATGTCCAAAAGGATCA
TGAAAATCACAAAAAAGATGAGGGCCTCCCACTGCCGGGCATCCTGGTGC
AGGAGGAATTCCTTAGCGTTGATGAGGGCGCCCAACTTATAGCCGACTTG
GATGACCTGCCATGGGACATCTCGCAGAGCGGCAGGCGAAAACAGAACTT
CGGACCCAAGACCAACTTTAAAAAGCGCAAACTGCGGCTGGGATCCTTTG
CCGGATTCCCCAGGACAACGGAATATGTGCAACGGCGCTTCGAAGACGTT
CCCCTGCTTCGTGGCTTTCAGACCATCGAACAGTGCTCCCTGGAGTACGA
GCCCAGCAAAGGAGCCAGCATAGATCCGCACGTGGACGATTGCTGGATCT
GGGGCGAGCGTGTGGTCACTGTCAACTGCCTCGGCGACTCAGTGCTCACT
TTGACGCCCTACGAAGTTCAACAATCGGGCAAGTACAACTTGGACTTGGT
TGCCAGCTACGAAGATGAACTATTGGCGCCTCTACTGACAGATGACCAAC
TTGCAACTTTTGAGGGAAAGGTGCTGCGCATACCTATGCCAAACCTCTCC
TTGATAGTTTTGTATGGGCCAGCGAGGTACCAGTTTGAGCATTCTGTACT
ACGCGAGGATGTCCAAGAGCGCCGCGTTTGTGTAGCCTACCGGGAGTTTA
CGCCCATGTACATCAATGGCGTAGACATCCAAAAGGGAGATCCTGTCCGA
GAAAAGTCTCAGATATTCTGGCAAATAAACTAGCAAACAAGACCAATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD42289.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-RA 1061 CG4036-RA 74..1020 1..947 4735 100 Plus
CG4036.b 952 CG4036.b 20..950 17..947 4655 100 Plus
CG4036.a 981 CG4036.a 49..979 17..947 4655 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9789794..9790536 1..743 3685 99.7 Plus
chr2L 23010047 chr2L 9790597..9790800 744..947 1020 100 Plus
chr2L 23010047 chr2L 9788207..9788374 743..576 705 94.6 Minus
chr2L 23010047 chr2L 9788376..9788471 97..2 315 88.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9790952..9791694 1..743 3715 100 Plus
2L 23513712 2L 9791755..9791958 744..947 1020 100 Plus
2L 23513712 2L 9789367..9789534 743..576 705 94.6 Minus
2L 23513712 2L 9789536..9789631 97..2 315 88.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9790952..9791694 1..743 3715 100 Plus
2L 23513712 2L 9791755..9791958 744..947 1020 100 Plus
2L 23513712 2L 9789367..9789534 743..576 705 94.6 Minus
2L 23513712 2L 9789536..9789631 97..2 315 88.5 Minus
Blast to na_te.dros performed on 2019-03-16 22:06:33 has no hits.

LD42289.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:07:16 Download gff for LD42289.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9789794..9790536 1..743 99 -> Plus
chr2L 9790597..9790800 744..947 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:25:00 Download gff for LD42289.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 1..915 19..933 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:50:58 Download gff for LD42289.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RC 1..915 19..933 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:10:04 Download gff for LD42289.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 1..915 19..933 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:33:11 Download gff for LD42289.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 1..915 19..933 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:29 Download gff for LD42289.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 1..915 19..933 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:02:02 Download gff for LD42289.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 1..947 1..947 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:50:58 Download gff for LD42289.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 38..984 1..947 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:04 Download gff for LD42289.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 56..1002 1..947 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:33:12 Download gff for LD42289.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 1..947 1..947 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:29 Download gff for LD42289.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 56..1002 1..947 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:16 Download gff for LD42289.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9791755..9791958 744..947 100   Plus
2L 9790952..9791694 1..743 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:16 Download gff for LD42289.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9791755..9791958 744..947 100   Plus
2L 9790952..9791694 1..743 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:16 Download gff for LD42289.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9791755..9791958 744..947 100   Plus
2L 9790952..9791694 1..743 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:04 Download gff for LD42289.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9790952..9791694 1..743 100 -> Plus
arm_2L 9791755..9791958 744..947 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:13:48 Download gff for LD42289.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9790952..9791694 1..743 100 -> Plus
2L 9791755..9791958 744..947 100   Plus

LD42289.hyp Sequence

Translation from 0 to 932

> LD42289.hyp
LLPNFRMNTIRPCGCKGVRTCLSCEQDFHIAKTSLREQFQQLEAWSYCIQ
CDLLQRGWDTNHVQKDHENHKKDEGLPLPGILVQEEFLSVDEGAQLIADL
DDLPWDISQSGRRKQNFGPKTNFKKRKLRLGSFAGFPRTTEYVQRRFEDV
PLLRGFQTIEQCSLEYEPSKGASIDPHVDDCWIWGERVVTVNCLGDSVLT
LTPYEVQQSGKYNLDLVASYEDELLAPLLTDDQLATFEGKVLRIPMPNLS
LIVLYGPARYQFEHSVLREDVQERRVCVAYREFTPMYINGVDIQKGDPVR
EKSQIFWQIN*

LD42289.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-PB 304 CG4036-PB 1..304 7..310 1635 100 Plus
CG4036-PA 304 CG4036-PA 1..304 7..310 1635 100 Plus

LD42289.pep Sequence

Translation from 18 to 932

> LD42289.pep
MNTIRPCGCKGVRTCLSCEQDFHIAKTSLREQFQQLEAWSYCIQCDLLQR
GWDTNHVQKDHENHKKDEGLPLPGILVQEEFLSVDEGAQLIADLDDLPWD
ISQSGRRKQNFGPKTNFKKRKLRLGSFAGFPRTTEYVQRRFEDVPLLRGF
QTIEQCSLEYEPSKGASIDPHVDDCWIWGERVVTVNCLGDSVLTLTPYEV
QQSGKYNLDLVASYEDELLAPLLTDDQLATFEGKVLRIPMPNLSLIVLYG
PARYQFEHSVLREDVQERRVCVAYREFTPMYINGVDIQKGDPVREKSQIF
WQIN*

LD42289.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22814-PA 304 GF22814-PA 1..303 1..303 1345 84.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10057-PA 304 GG10057-PA 1..304 1..304 1518 92.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13824-PA 307 GH13824-PA 1..304 1..303 1249 75.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-PB 304 CG4036-PB 1..304 1..304 1635 100 Plus
CG4036-PA 304 CG4036-PA 1..304 1..304 1635 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20151-PA 304 GI20151-PA 1..296 1..296 1212 74.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18936-PA 304 GL18936-PA 1..304 1..304 1308 80.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25863-PA 304 GA25863-PA 1..304 1..304 1323 81.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17708-PA 389 GM17708-PA 86..389 1..304 1604 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23631-PA 349 GD23631-PA 44..349 20..304 764 54 Plus
Dsim\GD17818-PA 58 GD17818-PA 1..29 1..29 139 86.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13536-PA 306 GJ13536-PA 1..303 1..303 1233 75.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24867-PA 307 GK24867-PA 1..306 1..303 1260 76.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18871-PA 304 GE18871-PA 1..304 1..304 1512 92.4 Plus