Clone LD42301 Report

Search the DGRC for LD42301

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:423
Well:1
Vector:pOT2
Associated Gene/TranscriptGgt-1-RA
Protein status:LD42301.pep: gold
Preliminary Size:2200
Sequenced Size:2254

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6461 2001-01-01 Release 2 assignment
CG6461 2001-09-19 Blastp of sequenced clone
CG6461 2003-01-01 Sim4 clustering to Release 3
CG6461 2008-04-29 Release 5.5 accounting
CG6461 2008-08-15 Release 5.9 accounting
CG6461 2008-12-18 5.12 accounting

Clone Sequence Records

LD42301.complete Sequence

2254 bp (2254 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058701

> LD42301.complete
CAACTCGGGCGGATCGAAGCCATCAGTCGATCGCAACAGGTGCTGGTGGT
CACAGGCGGGAGCTGCCGGAATCGAACGGAATCTTGTTGGGACTGTCTGT
CGTCGGTGGCCTTTGGAGAACATAGAAGAGCACATCTGTCCGCTGTTGTT
CATATATAATTTTTTCCGTGCTTTTCGCGACTCTTTGTTTTTTCTGTGTG
TTTCTGTGCCTCTGTGCGTTTCCGTGGCCAAGGCGACCAACTTATTCCGG
CTCAGCTCCAATAGTCAACCAATATTATACGAAATTCGCCATAGCAAACG
GGGACAATGAGGATTGTGTGGAGTAAGAAGCTCTTGCTATGGCTACTGCT
GGCTGCCCTCATGGTGACGGCGTTGACTCTGGGCTTGGTCTTCGGTCTGA
AGAATCGGGACACGCTGTACATCAGCGGAGCCGTGGTGTCCAATGGCATC
GGATGTGCTGCGGTCGGCGGTGAAATGCTGACCGATGGCGGTTCCGCCGT
GGATGCAGCCATTGCTACGCTGCTGTGCGAGGGCCTGCTATTGCCGCACT
CAATGGGCATTGGCGGTGGCTTCGTGGCCACCATATATACGCGAAGTAGC
CGCAAGGTGGAGACGGTGATTGCCAGGGAATCGGCACCGGCGGCCGCGCA
CAAGGACATGTTCGTGGGCGAGACGTCGATTACGGGCGCCAAATCGGGTG
CGGTGCCCGGCGAGATTCTTGGCTACTGGGAGATGCATCGTCGCTATGGC
ATCCTGCCCTGGAAACGCCTCTTCGAGCCGTCCATTAAGCTGGCCCGCGA
GGGTCATGTTGTTTCGCGCTATCTGGCCGCCGCCATCCAATCCAAGCTGG
ATAACATTAAGGCAGATCCCGGGCTCTCGGCCGTGTTCCTCAACGCAACC
GGTGATCCCCACTTGGAGGGCGATTACATGAAGCGTCCCGCGCTGGCCGA
CACGCTGGAGCGGATTGCCGAGAATGGAGCCAAGGAGTTCTACGATGGCG
GCGAGACGGGTCGCAAGTTCGTCGAGGATATCCAGAAGATGGGCGGCATC
ATTACGGAGCAGGACCTGCGCGATTACACGGTGCGCTGGGAGAGCGATGG
ACACGTGTCGGCCCATGTGAGTGGCACGTACACGCTCTATTCCACGCCCA
TGCCCAGCAGCGGACCCGTTCTGGCCTTCATCCTCAACCTGATGGCCGAT
CTCTATACGGACAATGAGCCGATCTATTGGCAGCGCGTGGTGGAGGCCTT
TAAACACGCCTATGGCCAGCGCACCAATCTGGGTGATATGTATGCCGATC
CCGTGAGCGCCGCGTCCATCAATGCCACCCTGGAGGAGATGCTCAAGCCG
GAGTTCCTGGAGAGCGTAAGGAAGCTGATCCACGACAATAGCACTTCGGA
GGACTACCTCTACTATGGCGCCAACTTCACCGTGGAGGAGGACCATGGCA
CCGCCCACATGAATGTCTTGGCCACCAATGGAGACGCCGTGTCCATCACC
AGTACCATCAATAACTATTTCGGCTCCAAGGTGGCTTCCACCCAGACGGG
AATCATTCTGAACGACGAGATGGACGACTTCTCCACGCCGGGCGTGATCA
ATGGCTTCGGTGTGCCCGCCTCGCCGGCCAACTACATTTATCCCGGCAAG
CGTCCCATGTCCTCGATGAGTCCGTGCATTATTGTTGACCAGGAAGGCAA
TGTACGTTTGCTGGTCGGAGCAGCAGGTGGCACTCGCATCACCACCAGCG
TGGCAGCTGTGATCATGAAGTACCTGCTACGCAAGGAGAGCCTCACCGCG
GCCGTGAACAATGGCCGCCTCCATCATCAGTTGGCTCCCATGCGCGTGAG
CTATGAGCAGGAGGTGGACAGCAGCGTTACCGACTACCTGAAGCAGGTGG
GCCACGAGATGTACGAGGAGCCCGTCGGCTCCAGCTTTGCAGCAGTGACC
GCCATTGGGGCGCTGGAGCAGCCGGAGCCATTCTATGATCGCCGTCGCAT
CGGCAGCGCCCTCACTCTGGCCAAAACCAACAAGATGCAGCATTAGGATG
CGTGTGATTTTATTTATTTAATCTAGTTCGTAAGTCGCATGAGCCGTGGC
CTGCGAGTAATGTTTACCAGTATTTCGAATAGAGAGTGTTTTCGAAAATT
CCTTTTTTATGTACATAACTACCAGGCTGTGAGTGCCCGATATATCCAAA
TAAACGGATTTTTGTTATCCTTTTTCCACAAAAAAAAAAAAAAAAAAAAA
AAAA

LD42301.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6461-RA 2488 CG6461-RA 214..2444 1..2231 11155 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18396602..18397809 1517..310 5905 99.3 Minus
chrX 22417052 chrX 18395008..18395478 2229..1759 2340 99.8 Minus
chrX 22417052 chrX 18401168..18401479 312..1 1560 100 Minus
chrX 22417052 chrX 18395539..18395781 1760..1518 1215 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18507476..18508683 1517..310 6040 100 Minus
X 23542271 X 18505881..18506353 2231..1759 2365 100 Minus
X 23542271 X 18512043..18512354 312..1 1560 100 Minus
X 23542271 X 18506414..18506656 1760..1518 1215 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18515574..18516781 1517..310 6040 100 Minus
X 23527363 X 18513979..18514451 2231..1759 2365 100 Minus
X 23527363 X 18520141..18520452 312..1 1560 100 Minus
X 23527363 X 18514512..18514754 1760..1518 1215 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:04:43 has no hits.

LD42301.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:05:40 Download gff for LD42301.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18401169..18401479 1..311 100   Minus
chrX 18395008..18395478 1759..2229 99 <- Minus
chrX 18395541..18395781 1518..1758 100 <- Minus
chrX 18396602..18397807 312..1517 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:25:02 Download gff for LD42301.complete
Subject Subject Range Query Range Percent Splice Strand
CG6461-RA 1..1740 307..2046 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:59:26 Download gff for LD42301.complete
Subject Subject Range Query Range Percent Splice Strand
CG6461-RA 1..1740 307..2046 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:39:00 Download gff for LD42301.complete
Subject Subject Range Query Range Percent Splice Strand
Ggt-1-RA 1..1740 307..2046 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:29:50 Download gff for LD42301.complete
Subject Subject Range Query Range Percent Splice Strand
CG6461-RA 1..1740 307..2046 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:51:53 Download gff for LD42301.complete
Subject Subject Range Query Range Percent Splice Strand
Ggt-1-RA 1..1740 307..2046 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:46:34 Download gff for LD42301.complete
Subject Subject Range Query Range Percent Splice Strand
CG6461-RA 6..2234 1..2229 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:59:26 Download gff for LD42301.complete
Subject Subject Range Query Range Percent Splice Strand
CG6461-RA 6..2234 1..2229 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:00 Download gff for LD42301.complete
Subject Subject Range Query Range Percent Splice Strand
Ggt-1-RA 6..2234 1..2229 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:29:50 Download gff for LD42301.complete
Subject Subject Range Query Range Percent Splice Strand
CG6461-RA 6..2234 1..2229 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:53 Download gff for LD42301.complete
Subject Subject Range Query Range Percent Splice Strand
Ggt-1-RA 168..2396 1..2229 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:05:40 Download gff for LD42301.complete
Subject Subject Range Query Range Percent Splice Strand
X 18505883..18506353 1759..2229 100 <- Minus
X 18506416..18506656 1518..1758 100 <- Minus
X 18507476..18508681 312..1517 100 <- Minus
X 18512044..18512354 1..311 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:05:40 Download gff for LD42301.complete
Subject Subject Range Query Range Percent Splice Strand
X 18505883..18506353 1759..2229 100 <- Minus
X 18506416..18506656 1518..1758 100 <- Minus
X 18507476..18508681 312..1517 100 <- Minus
X 18512044..18512354 1..311 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:05:40 Download gff for LD42301.complete
Subject Subject Range Query Range Percent Splice Strand
X 18505883..18506353 1759..2229 100 <- Minus
X 18506416..18506656 1518..1758 100 <- Minus
X 18507476..18508681 312..1517 100 <- Minus
X 18512044..18512354 1..311 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:00 Download gff for LD42301.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18399916..18400386 1759..2229 100 <- Minus
arm_X 18400449..18400689 1518..1758 100 <- Minus
arm_X 18401509..18402714 312..1517 100 <- Minus
arm_X 18406077..18406387 1..311 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:06:10 Download gff for LD42301.complete
Subject Subject Range Query Range Percent Splice Strand
X 18520142..18520452 1..311 100   Minus
X 18513981..18514451 1759..2229 100 <- Minus
X 18514514..18514754 1518..1758 100 <- Minus
X 18515574..18516779 312..1517 100 <- Minus

LD42301.pep Sequence

Translation from 306 to 2045

> LD42301.pep
MRIVWSKKLLLWLLLAALMVTALTLGLVFGLKNRDTLYISGAVVSNGIGC
AAVGGEMLTDGGSAVDAAIATLLCEGLLLPHSMGIGGGFVATIYTRSSRK
VETVIARESAPAAAHKDMFVGETSITGAKSGAVPGEILGYWEMHRRYGIL
PWKRLFEPSIKLAREGHVVSRYLAAAIQSKLDNIKADPGLSAVFLNATGD
PHLEGDYMKRPALADTLERIAENGAKEFYDGGETGRKFVEDIQKMGGIIT
EQDLRDYTVRWESDGHVSAHVSGTYTLYSTPMPSSGPVLAFILNLMADLY
TDNEPIYWQRVVEAFKHAYGQRTNLGDMYADPVSAASINATLEEMLKPEF
LESVRKLIHDNSTSEDYLYYGANFTVEEDHGTAHMNVLATNGDAVSITST
INNYFGSKVASTQTGIILNDEMDDFSTPGVINGFGVPASPANYIYPGKRP
MSSMSPCIIVDQEGNVRLLVGAAGGTRITTSVAAVIMKYLLRKESLTAAV
NNGRLHHQLAPMRVSYEQEVDSSVTDYLKQVGHEMYEEPVGSSFAAVTAI
GALEQPEPFYDRRRIGSALTLAKTNKMQH*

LD42301.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22409-PA 579 GF22409-PA 1..579 1..579 2584 81.7 Plus
Dana\GF22184-PA 670 GF22184-PA 110..667 5..571 1479 50.8 Plus
Dana\GF21750-PA 689 GF21750-PA 153..653 37..535 854 39.9 Plus
Dana\GF19288-PA 588 GF19288-PA 57..557 42..537 714 34.8 Plus
Dana\GF22184-PA 670 GF22184-PA 1..107 152..257 256 46.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18112-PA 603 GG18112-PA 27..603 3..579 2847 93.6 Plus
Dere\GG19988-PA 585 GG19988-PA 17..579 4..571 1639 55.9 Plus
Dere\GG19084-PA 727 GG19084-PA 191..705 37..550 868 40.8 Plus
Dere\GG19568-PA 592 GG19568-PA 57..561 38..537 699 35.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12335-PA 579 GH12335-PA 1..579 1..579 2281 72.7 Plus
Dgri\GH12038-PA 570 GH12038-PA 6..569 7..575 1635 54.3 Plus
Dgri\GH11925-PA 825 GH11925-PA 287..789 37..535 848 39.7 Plus
Dgri\GH24228-PA 586 GH24228-PA 51..550 38..534 713 35.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
Ggt-1-PB 579 CG6461-PB 1..579 1..579 2977 100 Plus
Ggt-1-PA 579 CG6461-PA 1..579 1..579 2977 100 Plus
CG17636-PA 571 CG17636-PA 6..565 7..571 1576 55.3 Plus
CG17636-PC 585 CG17636-PC 20..579 7..571 1576 55.3 Plus
CG17636-PB 501 CG17636-PB 1..495 72..571 1426 55.2 Plus
CG4829-PD 687 CG4829-PD 151..665 37..550 811 39.9 Plus
CG4829-PE 732 CG4829-PE 196..710 37..550 811 39.9 Plus
CG4829-PC 777 CG4829-PC 241..755 37..550 811 39.9 Plus
CG4829-PA 777 CG4829-PA 241..755 37..550 811 39.9 Plus
CG4829-PB 822 CG4829-PB 286..800 37..550 811 39.9 Plus
CG1492-PB 592 CG1492-PB 61..561 42..537 704 35.2 Plus
CG1492-PA 592 CG1492-PA 61..561 42..537 704 35.2 Plus
CG4829-PF 491 CG4829-PF 1..469 83..550 700 38.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15585-PA 561 GI15585-PA 1..561 19..579 2290 74.2 Plus
Dmoj\GI16193-PA 572 GI16193-PA 1..570 1..575 1556 51.3 Plus
Dmoj\GI15346-PA 822 GI15346-PA 285..801 37..551 864 39.7 Plus
Dmoj\GI15734-PA 563 GI15734-PA 33..527 43..534 693 34.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27026-PA 579 GL27026-PA 1..579 1..579 2421 78.8 Plus
Dper\GL13355-PA 566 GL13355-PA 2..561 7..571 1546 53.2 Plus
Dper\GL16517-PA 869 GL16517-PA 333..815 37..518 857 40.4 Plus
Dper\GL15840-PA 591 GL15840-PA 59..554 40..533 697 35.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19613-PA 579 GA19613-PA 1..579 1..579 2421 78.8 Plus
Dpse\GA22840-PB 584 GA22840-PB 20..579 7..571 1552 53.3 Plus
Dpse\GA23076-PA 791 GA23076-PA 255..737 37..518 866 40.8 Plus
Dpse\GA13353-PA 591 GA13353-PA 59..554 40..533 697 35.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22803-PA 579 GM22803-PA 1..579 1..579 3009 96.5 Plus
Dsec\GM11114-PA 542 GM11114-PA 15..531 7..529 1520 55.8 Plus
Dsec\GM13472-PA 687 GM13472-PA 151..665 37..550 834 40.3 Plus
Dsec\GM13229-PA 592 GM13229-PA 57..561 38..537 682 34.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16490-PA 580 GD16490-PA 12..574 4..571 1616 54.8 Plus
Dsim\GD24475-PA 286 GD24475-PA 1..286 118..403 1498 96.2 Plus
Dsim\GD15628-PA 158 GD15628-PA 1..158 422..579 823 96.2 Plus
Dsim\GD17313-PA 1057 GD17313-PA 196..692 55..550 797 40.3 Plus
Dsim\GD15947-PA 592 GD15947-PA 57..561 38..537 698 34.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15189-PA 561 GJ15189-PA 1..561 19..579 2287 74.3 Plus
Dvir\GJ16681-PA 545 GJ16681-PA 1..543 1..575 1543 52.2 Plus
Dvir\GJ19318-PA 829 GJ19318-PA 292..808 37..551 857 38.5 Plus
Dvir\GJ15262-PA 565 GJ15262-PA 35..529 43..534 698 35.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16403-PA 580 GK16403-PA 1..580 1..579 2455 77.2 Plus
Dwil\GK15427-PA 570 GK15427-PA 6..568 7..574 1584 52.6 Plus
Dwil\GK25371-PA 820 GK25371-PA 285..798 37..547 866 38.8 Plus
Dwil\GK24982-PA 570 GK24982-PA 33..532 38..534 687 33.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15517-PA 583 GE15517-PA 5..583 1..579 2884 93.8 Plus
Dyak\GE11521-PA 516 GE11521-PA 1..510 57..571 1522 56.1 Plus
Dyak\GE17630-PA 732 GE17630-PA 196..710 37..550 840 40.3 Plus
Dyak\GE16728-PA 593 GE16728-PA 58..562 38..537 709 34.4 Plus

LD42301.hyp Sequence

Translation from 306 to 2045

> LD42301.hyp
MRIVWSKKLLLWLLLAALMVTALTLGLVFGLKNRDTLYISGAVVSNGIGC
AAVGGEMLTDGGSAVDAAIATLLCEGLLLPHSMGIGGGFVATIYTRSSRK
VETVIARESAPAAAHKDMFVGETSITGAKSGAVPGEILGYWEMHRRYGIL
PWKRLFEPSIKLAREGHVVSRYLAAAIQSKLDNIKADPGLSAVFLNATGD
PHLEGDYMKRPALADTLERIAENGAKEFYDGGETGRKFVEDIQKMGGIIT
EQDLRDYTVRWESDGHVSAHVSGTYTLYSTPMPSSGPVLAFILNLMADLY
TDNEPIYWQRVVEAFKHAYGQRTNLGDMYADPVSAASINATLEEMLKPEF
LESVRKLIHDNSTSEDYLYYGANFTVEEDHGTAHMNVLATNGDAVSITST
INNYFGSKVASTQTGIILNDEMDDFSTPGVINGFGVPASPANYIYPGKRP
MSSMSPCIIVDQEGNVRLLVGAAGGTRITTSVAAVIMKYLLRKESLTAAV
NNGRLHHQLAPMRVSYEQEVDSSVTDYLKQVGHEMYEEPVGSSFAAVTAI
GALEQPEPFYDRRRIGSALTLAKTNKMQH*

LD42301.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
Ggt-1-PB 579 CG6461-PB 1..579 1..579 2977 100 Plus
Ggt-1-PA 579 CG6461-PA 1..579 1..579 2977 100 Plus
CG17636-PA 571 CG17636-PA 6..565 7..571 1576 55.3 Plus
CG17636-PC 585 CG17636-PC 20..579 7..571 1576 55.3 Plus
CG17636-PB 501 CG17636-PB 1..495 72..571 1426 55.2 Plus