BDGP Sequence Production Resources |
Search the DGRC for LD42301
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 423 |
Well: | 1 |
Vector: | pOT2 |
Associated Gene/Transcript | Ggt-1-RA |
Protein status: | LD42301.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 2254 |
Gene | Date | Evidence |
---|---|---|
CG6461 | 2001-01-01 | Release 2 assignment |
CG6461 | 2001-09-19 | Blastp of sequenced clone |
CG6461 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6461 | 2008-04-29 | Release 5.5 accounting |
CG6461 | 2008-08-15 | Release 5.9 accounting |
CG6461 | 2008-12-18 | 5.12 accounting |
2254 bp (2254 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058701
> LD42301.complete CAACTCGGGCGGATCGAAGCCATCAGTCGATCGCAACAGGTGCTGGTGGT CACAGGCGGGAGCTGCCGGAATCGAACGGAATCTTGTTGGGACTGTCTGT CGTCGGTGGCCTTTGGAGAACATAGAAGAGCACATCTGTCCGCTGTTGTT CATATATAATTTTTTCCGTGCTTTTCGCGACTCTTTGTTTTTTCTGTGTG TTTCTGTGCCTCTGTGCGTTTCCGTGGCCAAGGCGACCAACTTATTCCGG CTCAGCTCCAATAGTCAACCAATATTATACGAAATTCGCCATAGCAAACG GGGACAATGAGGATTGTGTGGAGTAAGAAGCTCTTGCTATGGCTACTGCT GGCTGCCCTCATGGTGACGGCGTTGACTCTGGGCTTGGTCTTCGGTCTGA AGAATCGGGACACGCTGTACATCAGCGGAGCCGTGGTGTCCAATGGCATC GGATGTGCTGCGGTCGGCGGTGAAATGCTGACCGATGGCGGTTCCGCCGT GGATGCAGCCATTGCTACGCTGCTGTGCGAGGGCCTGCTATTGCCGCACT CAATGGGCATTGGCGGTGGCTTCGTGGCCACCATATATACGCGAAGTAGC CGCAAGGTGGAGACGGTGATTGCCAGGGAATCGGCACCGGCGGCCGCGCA CAAGGACATGTTCGTGGGCGAGACGTCGATTACGGGCGCCAAATCGGGTG CGGTGCCCGGCGAGATTCTTGGCTACTGGGAGATGCATCGTCGCTATGGC ATCCTGCCCTGGAAACGCCTCTTCGAGCCGTCCATTAAGCTGGCCCGCGA GGGTCATGTTGTTTCGCGCTATCTGGCCGCCGCCATCCAATCCAAGCTGG ATAACATTAAGGCAGATCCCGGGCTCTCGGCCGTGTTCCTCAACGCAACC GGTGATCCCCACTTGGAGGGCGATTACATGAAGCGTCCCGCGCTGGCCGA CACGCTGGAGCGGATTGCCGAGAATGGAGCCAAGGAGTTCTACGATGGCG GCGAGACGGGTCGCAAGTTCGTCGAGGATATCCAGAAGATGGGCGGCATC ATTACGGAGCAGGACCTGCGCGATTACACGGTGCGCTGGGAGAGCGATGG ACACGTGTCGGCCCATGTGAGTGGCACGTACACGCTCTATTCCACGCCCA TGCCCAGCAGCGGACCCGTTCTGGCCTTCATCCTCAACCTGATGGCCGAT CTCTATACGGACAATGAGCCGATCTATTGGCAGCGCGTGGTGGAGGCCTT TAAACACGCCTATGGCCAGCGCACCAATCTGGGTGATATGTATGCCGATC CCGTGAGCGCCGCGTCCATCAATGCCACCCTGGAGGAGATGCTCAAGCCG GAGTTCCTGGAGAGCGTAAGGAAGCTGATCCACGACAATAGCACTTCGGA GGACTACCTCTACTATGGCGCCAACTTCACCGTGGAGGAGGACCATGGCA CCGCCCACATGAATGTCTTGGCCACCAATGGAGACGCCGTGTCCATCACC AGTACCATCAATAACTATTTCGGCTCCAAGGTGGCTTCCACCCAGACGGG AATCATTCTGAACGACGAGATGGACGACTTCTCCACGCCGGGCGTGATCA ATGGCTTCGGTGTGCCCGCCTCGCCGGCCAACTACATTTATCCCGGCAAG CGTCCCATGTCCTCGATGAGTCCGTGCATTATTGTTGACCAGGAAGGCAA TGTACGTTTGCTGGTCGGAGCAGCAGGTGGCACTCGCATCACCACCAGCG TGGCAGCTGTGATCATGAAGTACCTGCTACGCAAGGAGAGCCTCACCGCG GCCGTGAACAATGGCCGCCTCCATCATCAGTTGGCTCCCATGCGCGTGAG CTATGAGCAGGAGGTGGACAGCAGCGTTACCGACTACCTGAAGCAGGTGG GCCACGAGATGTACGAGGAGCCCGTCGGCTCCAGCTTTGCAGCAGTGACC GCCATTGGGGCGCTGGAGCAGCCGGAGCCATTCTATGATCGCCGTCGCAT CGGCAGCGCCCTCACTCTGGCCAAAACCAACAAGATGCAGCATTAGGATG CGTGTGATTTTATTTATTTAATCTAGTTCGTAAGTCGCATGAGCCGTGGC CTGCGAGTAATGTTTACCAGTATTTCGAATAGAGAGTGTTTTCGAAAATT CCTTTTTTATGTACATAACTACCAGGCTGTGAGTGCCCGATATATCCAAA TAAACGGATTTTTGTTATCCTTTTTCCACAAAAAAAAAAAAAAAAAAAAA AAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6461-RA | 2488 | CG6461-RA | 214..2444 | 1..2231 | 11155 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 18396602..18397809 | 1517..310 | 5905 | 99.3 | Minus |
chrX | 22417052 | chrX | 18395008..18395478 | 2229..1759 | 2340 | 99.8 | Minus |
chrX | 22417052 | chrX | 18401168..18401479 | 312..1 | 1560 | 100 | Minus |
chrX | 22417052 | chrX | 18395539..18395781 | 1760..1518 | 1215 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 18507476..18508683 | 1517..310 | 6040 | 100 | Minus |
X | 23542271 | X | 18505881..18506353 | 2231..1759 | 2365 | 100 | Minus |
X | 23542271 | X | 18512043..18512354 | 312..1 | 1560 | 100 | Minus |
X | 23542271 | X | 18506414..18506656 | 1760..1518 | 1215 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 18515574..18516781 | 1517..310 | 6040 | 100 | Minus |
X | 23527363 | X | 18513979..18514451 | 2231..1759 | 2365 | 100 | Minus |
X | 23527363 | X | 18520141..18520452 | 312..1 | 1560 | 100 | Minus |
X | 23527363 | X | 18514512..18514754 | 1760..1518 | 1215 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 18401169..18401479 | 1..311 | 100 | Minus | |
chrX | 18395008..18395478 | 1759..2229 | 99 | <- | Minus |
chrX | 18395541..18395781 | 1518..1758 | 100 | <- | Minus |
chrX | 18396602..18397807 | 312..1517 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6461-RA | 1..1740 | 307..2046 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6461-RA | 1..1740 | 307..2046 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ggt-1-RA | 1..1740 | 307..2046 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6461-RA | 1..1740 | 307..2046 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ggt-1-RA | 1..1740 | 307..2046 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6461-RA | 6..2234 | 1..2229 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6461-RA | 6..2234 | 1..2229 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ggt-1-RA | 6..2234 | 1..2229 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6461-RA | 6..2234 | 1..2229 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ggt-1-RA | 168..2396 | 1..2229 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18505883..18506353 | 1759..2229 | 100 | <- | Minus |
X | 18506416..18506656 | 1518..1758 | 100 | <- | Minus |
X | 18507476..18508681 | 312..1517 | 100 | <- | Minus |
X | 18512044..18512354 | 1..311 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18505883..18506353 | 1759..2229 | 100 | <- | Minus |
X | 18506416..18506656 | 1518..1758 | 100 | <- | Minus |
X | 18507476..18508681 | 312..1517 | 100 | <- | Minus |
X | 18512044..18512354 | 1..311 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18505883..18506353 | 1759..2229 | 100 | <- | Minus |
X | 18506416..18506656 | 1518..1758 | 100 | <- | Minus |
X | 18507476..18508681 | 312..1517 | 100 | <- | Minus |
X | 18512044..18512354 | 1..311 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 18399916..18400386 | 1759..2229 | 100 | <- | Minus |
arm_X | 18400449..18400689 | 1518..1758 | 100 | <- | Minus |
arm_X | 18401509..18402714 | 312..1517 | 100 | <- | Minus |
arm_X | 18406077..18406387 | 1..311 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18520142..18520452 | 1..311 | 100 | Minus | |
X | 18513981..18514451 | 1759..2229 | 100 | <- | Minus |
X | 18514514..18514754 | 1518..1758 | 100 | <- | Minus |
X | 18515574..18516779 | 312..1517 | 100 | <- | Minus |
Translation from 306 to 2045
> LD42301.pep MRIVWSKKLLLWLLLAALMVTALTLGLVFGLKNRDTLYISGAVVSNGIGC AAVGGEMLTDGGSAVDAAIATLLCEGLLLPHSMGIGGGFVATIYTRSSRK VETVIARESAPAAAHKDMFVGETSITGAKSGAVPGEILGYWEMHRRYGIL PWKRLFEPSIKLAREGHVVSRYLAAAIQSKLDNIKADPGLSAVFLNATGD PHLEGDYMKRPALADTLERIAENGAKEFYDGGETGRKFVEDIQKMGGIIT EQDLRDYTVRWESDGHVSAHVSGTYTLYSTPMPSSGPVLAFILNLMADLY TDNEPIYWQRVVEAFKHAYGQRTNLGDMYADPVSAASINATLEEMLKPEF LESVRKLIHDNSTSEDYLYYGANFTVEEDHGTAHMNVLATNGDAVSITST INNYFGSKVASTQTGIILNDEMDDFSTPGVINGFGVPASPANYIYPGKRP MSSMSPCIIVDQEGNVRLLVGAAGGTRITTSVAAVIMKYLLRKESLTAAV NNGRLHHQLAPMRVSYEQEVDSSVTDYLKQVGHEMYEEPVGSSFAAVTAI GALEQPEPFYDRRRIGSALTLAKTNKMQH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22409-PA | 579 | GF22409-PA | 1..579 | 1..579 | 2584 | 81.7 | Plus |
Dana\GF22184-PA | 670 | GF22184-PA | 110..667 | 5..571 | 1479 | 50.8 | Plus |
Dana\GF21750-PA | 689 | GF21750-PA | 153..653 | 37..535 | 854 | 39.9 | Plus |
Dana\GF19288-PA | 588 | GF19288-PA | 57..557 | 42..537 | 714 | 34.8 | Plus |
Dana\GF22184-PA | 670 | GF22184-PA | 1..107 | 152..257 | 256 | 46.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18112-PA | 603 | GG18112-PA | 27..603 | 3..579 | 2847 | 93.6 | Plus |
Dere\GG19988-PA | 585 | GG19988-PA | 17..579 | 4..571 | 1639 | 55.9 | Plus |
Dere\GG19084-PA | 727 | GG19084-PA | 191..705 | 37..550 | 868 | 40.8 | Plus |
Dere\GG19568-PA | 592 | GG19568-PA | 57..561 | 38..537 | 699 | 35.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12335-PA | 579 | GH12335-PA | 1..579 | 1..579 | 2281 | 72.7 | Plus |
Dgri\GH12038-PA | 570 | GH12038-PA | 6..569 | 7..575 | 1635 | 54.3 | Plus |
Dgri\GH11925-PA | 825 | GH11925-PA | 287..789 | 37..535 | 848 | 39.7 | Plus |
Dgri\GH24228-PA | 586 | GH24228-PA | 51..550 | 38..534 | 713 | 35.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ggt-1-PB | 579 | CG6461-PB | 1..579 | 1..579 | 2977 | 100 | Plus |
Ggt-1-PA | 579 | CG6461-PA | 1..579 | 1..579 | 2977 | 100 | Plus |
CG17636-PA | 571 | CG17636-PA | 6..565 | 7..571 | 1576 | 55.3 | Plus |
CG17636-PC | 585 | CG17636-PC | 20..579 | 7..571 | 1576 | 55.3 | Plus |
CG17636-PB | 501 | CG17636-PB | 1..495 | 72..571 | 1426 | 55.2 | Plus |
CG4829-PD | 687 | CG4829-PD | 151..665 | 37..550 | 811 | 39.9 | Plus |
CG4829-PE | 732 | CG4829-PE | 196..710 | 37..550 | 811 | 39.9 | Plus |
CG4829-PC | 777 | CG4829-PC | 241..755 | 37..550 | 811 | 39.9 | Plus |
CG4829-PA | 777 | CG4829-PA | 241..755 | 37..550 | 811 | 39.9 | Plus |
CG4829-PB | 822 | CG4829-PB | 286..800 | 37..550 | 811 | 39.9 | Plus |
CG1492-PB | 592 | CG1492-PB | 61..561 | 42..537 | 704 | 35.2 | Plus |
CG1492-PA | 592 | CG1492-PA | 61..561 | 42..537 | 704 | 35.2 | Plus |
CG4829-PF | 491 | CG4829-PF | 1..469 | 83..550 | 700 | 38.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15585-PA | 561 | GI15585-PA | 1..561 | 19..579 | 2290 | 74.2 | Plus |
Dmoj\GI16193-PA | 572 | GI16193-PA | 1..570 | 1..575 | 1556 | 51.3 | Plus |
Dmoj\GI15346-PA | 822 | GI15346-PA | 285..801 | 37..551 | 864 | 39.7 | Plus |
Dmoj\GI15734-PA | 563 | GI15734-PA | 33..527 | 43..534 | 693 | 34.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27026-PA | 579 | GL27026-PA | 1..579 | 1..579 | 2421 | 78.8 | Plus |
Dper\GL13355-PA | 566 | GL13355-PA | 2..561 | 7..571 | 1546 | 53.2 | Plus |
Dper\GL16517-PA | 869 | GL16517-PA | 333..815 | 37..518 | 857 | 40.4 | Plus |
Dper\GL15840-PA | 591 | GL15840-PA | 59..554 | 40..533 | 697 | 35.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19613-PA | 579 | GA19613-PA | 1..579 | 1..579 | 2421 | 78.8 | Plus |
Dpse\GA22840-PB | 584 | GA22840-PB | 20..579 | 7..571 | 1552 | 53.3 | Plus |
Dpse\GA23076-PA | 791 | GA23076-PA | 255..737 | 37..518 | 866 | 40.8 | Plus |
Dpse\GA13353-PA | 591 | GA13353-PA | 59..554 | 40..533 | 697 | 35.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22803-PA | 579 | GM22803-PA | 1..579 | 1..579 | 3009 | 96.5 | Plus |
Dsec\GM11114-PA | 542 | GM11114-PA | 15..531 | 7..529 | 1520 | 55.8 | Plus |
Dsec\GM13472-PA | 687 | GM13472-PA | 151..665 | 37..550 | 834 | 40.3 | Plus |
Dsec\GM13229-PA | 592 | GM13229-PA | 57..561 | 38..537 | 682 | 34.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16490-PA | 580 | GD16490-PA | 12..574 | 4..571 | 1616 | 54.8 | Plus |
Dsim\GD24475-PA | 286 | GD24475-PA | 1..286 | 118..403 | 1498 | 96.2 | Plus |
Dsim\GD15628-PA | 158 | GD15628-PA | 1..158 | 422..579 | 823 | 96.2 | Plus |
Dsim\GD17313-PA | 1057 | GD17313-PA | 196..692 | 55..550 | 797 | 40.3 | Plus |
Dsim\GD15947-PA | 592 | GD15947-PA | 57..561 | 38..537 | 698 | 34.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15189-PA | 561 | GJ15189-PA | 1..561 | 19..579 | 2287 | 74.3 | Plus |
Dvir\GJ16681-PA | 545 | GJ16681-PA | 1..543 | 1..575 | 1543 | 52.2 | Plus |
Dvir\GJ19318-PA | 829 | GJ19318-PA | 292..808 | 37..551 | 857 | 38.5 | Plus |
Dvir\GJ15262-PA | 565 | GJ15262-PA | 35..529 | 43..534 | 698 | 35.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16403-PA | 580 | GK16403-PA | 1..580 | 1..579 | 2455 | 77.2 | Plus |
Dwil\GK15427-PA | 570 | GK15427-PA | 6..568 | 7..574 | 1584 | 52.6 | Plus |
Dwil\GK25371-PA | 820 | GK25371-PA | 285..798 | 37..547 | 866 | 38.8 | Plus |
Dwil\GK24982-PA | 570 | GK24982-PA | 33..532 | 38..534 | 687 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15517-PA | 583 | GE15517-PA | 5..583 | 1..579 | 2884 | 93.8 | Plus |
Dyak\GE11521-PA | 516 | GE11521-PA | 1..510 | 57..571 | 1522 | 56.1 | Plus |
Dyak\GE17630-PA | 732 | GE17630-PA | 196..710 | 37..550 | 840 | 40.3 | Plus |
Dyak\GE16728-PA | 593 | GE16728-PA | 58..562 | 38..537 | 709 | 34.4 | Plus |
Translation from 306 to 2045
> LD42301.hyp MRIVWSKKLLLWLLLAALMVTALTLGLVFGLKNRDTLYISGAVVSNGIGC AAVGGEMLTDGGSAVDAAIATLLCEGLLLPHSMGIGGGFVATIYTRSSRK VETVIARESAPAAAHKDMFVGETSITGAKSGAVPGEILGYWEMHRRYGIL PWKRLFEPSIKLAREGHVVSRYLAAAIQSKLDNIKADPGLSAVFLNATGD PHLEGDYMKRPALADTLERIAENGAKEFYDGGETGRKFVEDIQKMGGIIT EQDLRDYTVRWESDGHVSAHVSGTYTLYSTPMPSSGPVLAFILNLMADLY TDNEPIYWQRVVEAFKHAYGQRTNLGDMYADPVSAASINATLEEMLKPEF LESVRKLIHDNSTSEDYLYYGANFTVEEDHGTAHMNVLATNGDAVSITST INNYFGSKVASTQTGIILNDEMDDFSTPGVINGFGVPASPANYIYPGKRP MSSMSPCIIVDQEGNVRLLVGAAGGTRITTSVAAVIMKYLLRKESLTAAV NNGRLHHQLAPMRVSYEQEVDSSVTDYLKQVGHEMYEEPVGSSFAAVTAI GALEQPEPFYDRRRIGSALTLAKTNKMQH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ggt-1-PB | 579 | CG6461-PB | 1..579 | 1..579 | 2977 | 100 | Plus |
Ggt-1-PA | 579 | CG6461-PA | 1..579 | 1..579 | 2977 | 100 | Plus |
CG17636-PA | 571 | CG17636-PA | 6..565 | 7..571 | 1576 | 55.3 | Plus |
CG17636-PC | 585 | CG17636-PC | 20..579 | 7..571 | 1576 | 55.3 | Plus |
CG17636-PB | 501 | CG17636-PB | 1..495 | 72..571 | 1426 | 55.2 | Plus |