Clone LD42327 Report

Search the DGRC for LD42327

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:423
Well:27
Vector:pOT2
Associated Gene/TranscriptNdc1-RA
Protein status:LD42327.pep: gold
Preliminary Size:2160
Sequenced Size:1992

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5857 2001-01-01 Release 2 assignment
CG5857 2001-10-10 Blastp of sequenced clone
CG5857 2003-01-01 Sim4 clustering to Release 3
CG5857 2008-04-29 Release 5.5 accounting
CG5857 2008-08-15 Release 5.9 accounting
CG5857 2008-12-18 5.12 accounting

Clone Sequence Records

LD42327.complete Sequence

1992 bp (1992 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061468

> LD42327.complete
TCACACTTAAAAGTGCAACAACGCGCGCGTTGTCGGCAACCGTCGAATAT
TTGCAATTAGTCGCGAAATCAATTAGAAAACTATAGAATTAAATCAAATT
ATTGGTGATACCTCGATGGTCTAGCAGTTCGGAGCGCAAACATGTCTGCT
AGCTCCTCCAGCAACGCTTGCAAGCTCTTGCTGCTCGGCCGCTGCCTGCG
CGCCGTGCTCCTCAGCGTGGCCATCCAATTCCTGCTGCTCACAGTGTTCC
TGCTGTTTGTGAACTTCCAACTGTTGCATCCGCTCGCCTGGGTGACGGGA
ACACTGCGTCTGGTAGCCAGTTGGTACACCTGGTTTGCCAGCATCCCTCT
GGTGGCCTCCGTCGTGCTCTACGGTGTGATTCTTTGCCAGCAGCACTTGT
CGGAGCGACGCTACTGCCCAACCCGCTACCGGTGGCTCCTGCACTACGGT
CCACGCAAGGTGCTCTTTCTGTTCGCCCACCTTCTGGTCGGTCTGCTGAC
CGCCTGGCTCTACACGGGCTATCTGCACACAGACTATCAACACCTGAAAT
ATAAGTGCTATGGCCAGGATTGCATTAGTGCTTACAATGTCTATCTATTA
GGCATCGGTATGACCGCCGGCTGCTACTACTTTGTCTCCGTTCACATGCG
CAAGGAGATCTCCATTGAATTTCCCATTGTGGAGCAATCGCGGGCGGAGA
AGATGCGAGAGCTGCTCTACGCCAGTTTGGCCAAATCTCTATTAAGTTCG
CTGCTGCCTACGATCAGTTACACCGCCGTATTTTGTCTTTTCGGACCCAT
GGTATGCCACAGACTTAGTCACATTCTCTCTGTGGACATGGACGAGCGAC
TGGATGGATTCTTCGGAGTTGTTACCAATGTGCGCCTGCTTTTTTACGGC
TATTTGCTGACCGCACAGATTTTGAGCAACATGCACCTAATGCGTTGCTT
TTACGGCATTCTGCTCTCGGAGGATTTGCCACTGGTGGTGACTAAACCGC
GAGCTGCTTTTGCCCATGAACAGGATATAACCTTGGTAGCGGGTCTCGGA
GTTTTCAATGTGTATGTAGTGCAGTGCCTTGCTGCTCATCATTTCTACAA
GCTGGCGTTGCGAAAGAACTCGCCACAACGGGCAGAGATATTCCAGCTGA
CTGAGCCGGGTAACCGGCCAGCAAGTTGGCGCTCCCTCTGCGACCAATGC
TTGAGCATTCTCGGCAGCTTTACCGAAGAACTAACCGAGTCGATGCAGAA
GATAAGTATACTCAAGTGCGCCCAGAGTCTGCCGATGCCGAAGATAACCG
AATCGCTTACAACTAGCTTGATGGCCGAGAAGGTGTTGCTGCGGCAATAC
AACCAGAAACACGGCATTCGACCCATTGTATCGCCCAGTCGCGAGGTTGC
TGTTGAAAGTCCAGCGGATGGCATCCGTCATTTTCCCAACTGGTGTGAGC
GTGTATCCACGCAGTTGGAGCAGTCCCTACAACGGTTGCTACAGCGCGTT
CCCGGCATTGTGTACTTATTCAACGAACCCGAAGGTGCCAAGACGACGTT
TCTGCTGGCCAACTCCCTGCCCGTAGTGTATATGACTCAGGCTCTGGCTC
AGGTGTGCGCAGCCTCGCTCAAAGAGGATCCATATGGAGTAGTGCAGAAC
GATTTGCCTGCTATCATCAAGGCGATCAACAAGCTGCGAAATGAGCTAGA
TAAGCTAAGTAGCGTGATAGGCAACATAAGGATATCCAGCTCTAGCTTTA
ACGTGCTTCGATGCGCAGTGCGACGCAGTCTGTACGCCATCTGTTTGTCG
TTTTGCGACTATCTGGACGATCTGCTACCCCCTGGAGAGGAACTGCGCCA
GCTGCAGGACCTCGTCTGCCAGGAGTAAACCCATCCATCACTTTATACAC
TCATCTTGTACACTGTTTTGCATCTCTTTAGTTGTTTGTCTGCGGTAACA
ATAAAAATTAATAAATATAACTACAAAAAAAAAAAAAAAAAA

LD42327.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5857-RA 2042 CG5857-RA 59..2035 1..1977 9885 100 Plus
CG13601-RA 1151 CG13601-RA 1061..1151 1977..1887 455 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19748448..19749882 540..1974 7130 99.8 Plus
chr3R 27901430 chr3R 19747849..19748387 1..539 2665 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23925002..23926439 540..1977 7190 100 Plus
3R 32079331 3R 23924403..23924941 1..539 2695 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23665833..23667270 540..1977 7190 100 Plus
3R 31820162 3R 23665234..23665772 1..539 2695 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:41:32 has no hits.

LD42327.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:42:20 Download gff for LD42327.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19747849..19748387 1..539 99 -> Plus
chr3R 19748448..19749857 540..1949 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:25:03 Download gff for LD42327.complete
Subject Subject Range Query Range Percent Splice Strand
CG5857-RA 1..1737 142..1878 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:53:39 Download gff for LD42327.complete
Subject Subject Range Query Range Percent Splice Strand
CG5857-RA 1..1737 142..1878 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:26:30 Download gff for LD42327.complete
Subject Subject Range Query Range Percent Splice Strand
Ndc1-RA 1..1737 142..1878 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:22:38 Download gff for LD42327.complete
Subject Subject Range Query Range Percent Splice Strand
CG5857-RA 1..1737 142..1878 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:05 Download gff for LD42327.complete
Subject Subject Range Query Range Percent Splice Strand
Ndc1-RA 1..1737 142..1878 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:38:52 Download gff for LD42327.complete
Subject Subject Range Query Range Percent Splice Strand
CG5857-RA 1..1974 1..1974 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:53:39 Download gff for LD42327.complete
Subject Subject Range Query Range Percent Splice Strand
CG5857-RA 1..1974 1..1974 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:30 Download gff for LD42327.complete
Subject Subject Range Query Range Percent Splice Strand
Ndc1-RA 5..1978 1..1974 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:22:39 Download gff for LD42327.complete
Subject Subject Range Query Range Percent Splice Strand
CG5857-RA 1..1974 1..1974 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:05 Download gff for LD42327.complete
Subject Subject Range Query Range Percent Splice Strand
Ndc1-RA 5..1978 1..1974 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:42:20 Download gff for LD42327.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23924403..23924941 1..539 100 -> Plus
3R 23925002..23926436 540..1974 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:42:20 Download gff for LD42327.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23924403..23924941 1..539 100 -> Plus
3R 23925002..23926436 540..1974 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:42:20 Download gff for LD42327.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23924403..23924941 1..539 100 -> Plus
3R 23925002..23926436 540..1974 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:30 Download gff for LD42327.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19750125..19750663 1..539 100 -> Plus
arm_3R 19750724..19752158 540..1974 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:59:45 Download gff for LD42327.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23665234..23665772 1..539 100 -> Plus
3R 23665833..23667267 540..1974 100   Plus

LD42327.pep Sequence

Translation from 141 to 1877

> LD42327.pep
MSASSSSNACKLLLLGRCLRAVLLSVAIQFLLLTVFLLFVNFQLLHPLAW
VTGTLRLVASWYTWFASIPLVASVVLYGVILCQQHLSERRYCPTRYRWLL
HYGPRKVLFLFAHLLVGLLTAWLYTGYLHTDYQHLKYKCYGQDCISAYNV
YLLGIGMTAGCYYFVSVHMRKEISIEFPIVEQSRAEKMRELLYASLAKSL
LSSLLPTISYTAVFCLFGPMVCHRLSHILSVDMDERLDGFFGVVTNVRLL
FYGYLLTAQILSNMHLMRCFYGILLSEDLPLVVTKPRAAFAHEQDITLVA
GLGVFNVYVVQCLAAHHFYKLALRKNSPQRAEIFQLTEPGNRPASWRSLC
DQCLSILGSFTEELTESMQKISILKCAQSLPMPKITESLTTSLMAEKVLL
RQYNQKHGIRPIVSPSREVAVESPADGIRHFPNWCERVSTQLEQSLQRLL
QRVPGIVYLFNEPEGAKTTFLLANSLPVVYMTQALAQVCAASLKEDPYGV
VQNDLPAIIKAINKLRNELDKLSSVIGNIRISSSSFNVLRCAVRRSLYAI
CLSFCDYLDDLLPPGEELRQLQDLVCQE*

LD42327.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17021-PA 578 GF17021-PA 1..578 1..578 2353 76 Plus
Dana\GF25084-PA 586 GF25084-PA 75..580 62..573 224 22.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11235-PA 578 GG11235-PA 1..578 1..578 2769 91.7 Plus
Dere\GG15240-PA 598 GG15240-PA 18..534 11..519 182 20.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13245-PA 578 GH13245-PA 2..577 3..577 1662 55.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
Ndc1-PA 578 CG5857-PA 1..578 1..578 2989 100 Plus
CG32246-PB 565 CG32246-PB 18..545 11..559 244 20.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22372-PA 574 GI22372-PA 2..573 3..577 1845 60.9 Plus
Dmoj\GI18355-PA 553 GI18355-PA 19..540 13..562 175 22.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24200-PA 579 GL24200-PA 1..579 1..578 2068 67.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19183-PA 579 GA19183-PA 1..579 1..578 2064 67.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26536-PA 578 GM26536-PA 1..578 1..578 2941 95.3 Plus
Dsec\GM14672-PA 544 GM14672-PA 18..504 13..521 201 21.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21044-PA 579 GD21044-PA 4..579 3..578 2820 93.4 Plus
Dsim\GD13854-PA 544 GD13854-PA 18..504 13..521 226 21.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24406-PA 580 GJ24406-PA 2..579 3..577 1855 63.4 Plus
Dvir\GJ20755-PA 548 GJ20755-PA 19..544 13..573 247 24.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22549-PA 580 GK22549-PA 1..580 1..578 2016 65.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10401-PA 578 GE10401-PA 1..578 1..578 2735 91.2 Plus
Dyak\GE21461-PA 591 GE21461-PA 16..571 11..559 230 22.4 Plus

LD42327.hyp Sequence

Translation from 141 to 1877

> LD42327.hyp
MSASSSSNACKLLLLGRCLRAVLLSVAIQFLLLTVFLLFVNFQLLHPLAW
VTGTLRLVASWYTWFASIPLVASVVLYGVILCQQHLSERRYCPTRYRWLL
HYGPRKVLFLFAHLLVGLLTAWLYTGYLHTDYQHLKYKCYGQDCISAYNV
YLLGIGMTAGCYYFVSVHMRKEISIEFPIVEQSRAEKMRELLYASLAKSL
LSSLLPTISYTAVFCLFGPMVCHRLSHILSVDMDERLDGFFGVVTNVRLL
FYGYLLTAQILSNMHLMRCFYGILLSEDLPLVVTKPRAAFAHEQDITLVA
GLGVFNVYVVQCLAAHHFYKLALRKNSPQRAEIFQLTEPGNRPASWRSLC
DQCLSILGSFTEELTESMQKISILKCAQSLPMPKITESLTTSLMAEKVLL
RQYNQKHGIRPIVSPSREVAVESPADGIRHFPNWCERVSTQLEQSLQRLL
QRVPGIVYLFNEPEGAKTTFLLANSLPVVYMTQALAQVCAASLKEDPYGV
VQNDLPAIIKAINKLRNELDKLSSVIGNIRISSSSFNVLRCAVRRSLYAI
CLSFCDYLDDLLPPGEELRQLQDLVCQE*

LD42327.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
Ndc1-PA 578 CG5857-PA 1..578 1..578 2989 100 Plus
CG32246-PB 565 CG32246-PB 18..545 11..559 244 20.8 Plus