BDGP Sequence Production Resources |
Search the DGRC for LD42327
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 423 |
Well: | 27 |
Vector: | pOT2 |
Associated Gene/Transcript | Ndc1-RA |
Protein status: | LD42327.pep: gold |
Preliminary Size: | 2160 |
Sequenced Size: | 1992 |
Gene | Date | Evidence |
---|---|---|
CG5857 | 2001-01-01 | Release 2 assignment |
CG5857 | 2001-10-10 | Blastp of sequenced clone |
CG5857 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5857 | 2008-04-29 | Release 5.5 accounting |
CG5857 | 2008-08-15 | Release 5.9 accounting |
CG5857 | 2008-12-18 | 5.12 accounting |
1992 bp (1992 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061468
> LD42327.complete TCACACTTAAAAGTGCAACAACGCGCGCGTTGTCGGCAACCGTCGAATAT TTGCAATTAGTCGCGAAATCAATTAGAAAACTATAGAATTAAATCAAATT ATTGGTGATACCTCGATGGTCTAGCAGTTCGGAGCGCAAACATGTCTGCT AGCTCCTCCAGCAACGCTTGCAAGCTCTTGCTGCTCGGCCGCTGCCTGCG CGCCGTGCTCCTCAGCGTGGCCATCCAATTCCTGCTGCTCACAGTGTTCC TGCTGTTTGTGAACTTCCAACTGTTGCATCCGCTCGCCTGGGTGACGGGA ACACTGCGTCTGGTAGCCAGTTGGTACACCTGGTTTGCCAGCATCCCTCT GGTGGCCTCCGTCGTGCTCTACGGTGTGATTCTTTGCCAGCAGCACTTGT CGGAGCGACGCTACTGCCCAACCCGCTACCGGTGGCTCCTGCACTACGGT CCACGCAAGGTGCTCTTTCTGTTCGCCCACCTTCTGGTCGGTCTGCTGAC CGCCTGGCTCTACACGGGCTATCTGCACACAGACTATCAACACCTGAAAT ATAAGTGCTATGGCCAGGATTGCATTAGTGCTTACAATGTCTATCTATTA GGCATCGGTATGACCGCCGGCTGCTACTACTTTGTCTCCGTTCACATGCG CAAGGAGATCTCCATTGAATTTCCCATTGTGGAGCAATCGCGGGCGGAGA AGATGCGAGAGCTGCTCTACGCCAGTTTGGCCAAATCTCTATTAAGTTCG CTGCTGCCTACGATCAGTTACACCGCCGTATTTTGTCTTTTCGGACCCAT GGTATGCCACAGACTTAGTCACATTCTCTCTGTGGACATGGACGAGCGAC TGGATGGATTCTTCGGAGTTGTTACCAATGTGCGCCTGCTTTTTTACGGC TATTTGCTGACCGCACAGATTTTGAGCAACATGCACCTAATGCGTTGCTT TTACGGCATTCTGCTCTCGGAGGATTTGCCACTGGTGGTGACTAAACCGC GAGCTGCTTTTGCCCATGAACAGGATATAACCTTGGTAGCGGGTCTCGGA GTTTTCAATGTGTATGTAGTGCAGTGCCTTGCTGCTCATCATTTCTACAA GCTGGCGTTGCGAAAGAACTCGCCACAACGGGCAGAGATATTCCAGCTGA CTGAGCCGGGTAACCGGCCAGCAAGTTGGCGCTCCCTCTGCGACCAATGC TTGAGCATTCTCGGCAGCTTTACCGAAGAACTAACCGAGTCGATGCAGAA GATAAGTATACTCAAGTGCGCCCAGAGTCTGCCGATGCCGAAGATAACCG AATCGCTTACAACTAGCTTGATGGCCGAGAAGGTGTTGCTGCGGCAATAC AACCAGAAACACGGCATTCGACCCATTGTATCGCCCAGTCGCGAGGTTGC TGTTGAAAGTCCAGCGGATGGCATCCGTCATTTTCCCAACTGGTGTGAGC GTGTATCCACGCAGTTGGAGCAGTCCCTACAACGGTTGCTACAGCGCGTT CCCGGCATTGTGTACTTATTCAACGAACCCGAAGGTGCCAAGACGACGTT TCTGCTGGCCAACTCCCTGCCCGTAGTGTATATGACTCAGGCTCTGGCTC AGGTGTGCGCAGCCTCGCTCAAAGAGGATCCATATGGAGTAGTGCAGAAC GATTTGCCTGCTATCATCAAGGCGATCAACAAGCTGCGAAATGAGCTAGA TAAGCTAAGTAGCGTGATAGGCAACATAAGGATATCCAGCTCTAGCTTTA ACGTGCTTCGATGCGCAGTGCGACGCAGTCTGTACGCCATCTGTTTGTCG TTTTGCGACTATCTGGACGATCTGCTACCCCCTGGAGAGGAACTGCGCCA GCTGCAGGACCTCGTCTGCCAGGAGTAAACCCATCCATCACTTTATACAC TCATCTTGTACACTGTTTTGCATCTCTTTAGTTGTTTGTCTGCGGTAACA ATAAAAATTAATAAATATAACTACAAAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 19747849..19748387 | 1..539 | 99 | -> | Plus |
chr3R | 19748448..19749857 | 540..1949 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5857-RA | 1..1737 | 142..1878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5857-RA | 1..1737 | 142..1878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ndc1-RA | 1..1737 | 142..1878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5857-RA | 1..1737 | 142..1878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ndc1-RA | 1..1737 | 142..1878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5857-RA | 1..1974 | 1..1974 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5857-RA | 1..1974 | 1..1974 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ndc1-RA | 5..1978 | 1..1974 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5857-RA | 1..1974 | 1..1974 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ndc1-RA | 5..1978 | 1..1974 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23924403..23924941 | 1..539 | 100 | -> | Plus |
3R | 23925002..23926436 | 540..1974 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23924403..23924941 | 1..539 | 100 | -> | Plus |
3R | 23925002..23926436 | 540..1974 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23924403..23924941 | 1..539 | 100 | -> | Plus |
3R | 23925002..23926436 | 540..1974 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 19750125..19750663 | 1..539 | 100 | -> | Plus |
arm_3R | 19750724..19752158 | 540..1974 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23665234..23665772 | 1..539 | 100 | -> | Plus |
3R | 23665833..23667267 | 540..1974 | 100 | Plus |
Translation from 141 to 1877
> LD42327.pep MSASSSSNACKLLLLGRCLRAVLLSVAIQFLLLTVFLLFVNFQLLHPLAW VTGTLRLVASWYTWFASIPLVASVVLYGVILCQQHLSERRYCPTRYRWLL HYGPRKVLFLFAHLLVGLLTAWLYTGYLHTDYQHLKYKCYGQDCISAYNV YLLGIGMTAGCYYFVSVHMRKEISIEFPIVEQSRAEKMRELLYASLAKSL LSSLLPTISYTAVFCLFGPMVCHRLSHILSVDMDERLDGFFGVVTNVRLL FYGYLLTAQILSNMHLMRCFYGILLSEDLPLVVTKPRAAFAHEQDITLVA GLGVFNVYVVQCLAAHHFYKLALRKNSPQRAEIFQLTEPGNRPASWRSLC DQCLSILGSFTEELTESMQKISILKCAQSLPMPKITESLTTSLMAEKVLL RQYNQKHGIRPIVSPSREVAVESPADGIRHFPNWCERVSTQLEQSLQRLL QRVPGIVYLFNEPEGAKTTFLLANSLPVVYMTQALAQVCAASLKEDPYGV VQNDLPAIIKAINKLRNELDKLSSVIGNIRISSSSFNVLRCAVRRSLYAI CLSFCDYLDDLLPPGEELRQLQDLVCQE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17021-PA | 578 | GF17021-PA | 1..578 | 1..578 | 2353 | 76 | Plus |
Dana\GF25084-PA | 586 | GF25084-PA | 75..580 | 62..573 | 224 | 22.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11235-PA | 578 | GG11235-PA | 1..578 | 1..578 | 2769 | 91.7 | Plus |
Dere\GG15240-PA | 598 | GG15240-PA | 18..534 | 11..519 | 182 | 20.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13245-PA | 578 | GH13245-PA | 2..577 | 3..577 | 1662 | 55.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ndc1-PA | 578 | CG5857-PA | 1..578 | 1..578 | 2989 | 100 | Plus |
CG32246-PB | 565 | CG32246-PB | 18..545 | 11..559 | 244 | 20.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22372-PA | 574 | GI22372-PA | 2..573 | 3..577 | 1845 | 60.9 | Plus |
Dmoj\GI18355-PA | 553 | GI18355-PA | 19..540 | 13..562 | 175 | 22.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24200-PA | 579 | GL24200-PA | 1..579 | 1..578 | 2068 | 67.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19183-PA | 579 | GA19183-PA | 1..579 | 1..578 | 2064 | 67.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26536-PA | 578 | GM26536-PA | 1..578 | 1..578 | 2941 | 95.3 | Plus |
Dsec\GM14672-PA | 544 | GM14672-PA | 18..504 | 13..521 | 201 | 21.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21044-PA | 579 | GD21044-PA | 4..579 | 3..578 | 2820 | 93.4 | Plus |
Dsim\GD13854-PA | 544 | GD13854-PA | 18..504 | 13..521 | 226 | 21.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24406-PA | 580 | GJ24406-PA | 2..579 | 3..577 | 1855 | 63.4 | Plus |
Dvir\GJ20755-PA | 548 | GJ20755-PA | 19..544 | 13..573 | 247 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22549-PA | 580 | GK22549-PA | 1..580 | 1..578 | 2016 | 65.6 | Plus |
Translation from 141 to 1877
> LD42327.hyp MSASSSSNACKLLLLGRCLRAVLLSVAIQFLLLTVFLLFVNFQLLHPLAW VTGTLRLVASWYTWFASIPLVASVVLYGVILCQQHLSERRYCPTRYRWLL HYGPRKVLFLFAHLLVGLLTAWLYTGYLHTDYQHLKYKCYGQDCISAYNV YLLGIGMTAGCYYFVSVHMRKEISIEFPIVEQSRAEKMRELLYASLAKSL LSSLLPTISYTAVFCLFGPMVCHRLSHILSVDMDERLDGFFGVVTNVRLL FYGYLLTAQILSNMHLMRCFYGILLSEDLPLVVTKPRAAFAHEQDITLVA GLGVFNVYVVQCLAAHHFYKLALRKNSPQRAEIFQLTEPGNRPASWRSLC DQCLSILGSFTEELTESMQKISILKCAQSLPMPKITESLTTSLMAEKVLL RQYNQKHGIRPIVSPSREVAVESPADGIRHFPNWCERVSTQLEQSLQRLL QRVPGIVYLFNEPEGAKTTFLLANSLPVVYMTQALAQVCAASLKEDPYGV VQNDLPAIIKAINKLRNELDKLSSVIGNIRISSSSFNVLRCAVRRSLYAI CLSFCDYLDDLLPPGEELRQLQDLVCQE*