Clone LD42626 Report

Search the DGRC for LD42626

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:426
Well:26
Vector:pOT2
Associated Gene/TranscriptTH1-RA
Protein status:LD42626.pep: gold
Preliminary Size:2310
Sequenced Size:1957

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9984 2001-01-01 Release 2 assignment
CG9984 2001-07-04 Blastp of sequenced clone
CG9984 2003-01-01 Sim4 clustering to Release 3
TH1 2008-04-29 Release 5.5 accounting
TH1 2008-08-15 Release 5.9 accounting
TH1 2008-12-18 5.12 accounting

Clone Sequence Records

LD42626.complete Sequence

1957 bp (1957 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051957

> LD42626.complete
TTAATCAAAATAAGAAAAATATTTTTATGTTATTGTAAATAAGTTTTTGA
GAAAAAATGGAAGTGGAATACGACGACTCTGGTTGGCAGGGCCGCGCCAA
AGGACAAACCAATCCGGAGGAAACGCTTGAGGACAATCCGCAGAAGACGA
TACAGGAATGCCTGGAGAAGTTCCTCACACCGGACTACATCATGGAGCCG
GGGATATTTACGCAGCTGAAGCGCTACTTTCAGTCGGGCGGATCTCCGGA
GGAGGTTATATCGATGCTATCCGAGAACTACAAGGCGGTGGCCCAGATGG
CCAACCTGCTTGCGGAATGGCTCATCCTGGCGGGCGTCAAGGTTACCGAA
GTCCAGGCCATGGTGGAGAATCATCTCAAGGAAATGATTCTTAAGTCCTT
CGATCCCAAGAAGGCGGACACCATATTCACGGAGGAGGGTGAGACGCCCG
ACTGGCTAACCGAGATGATCGACCACTATACGTGGCGCTCGCTAATCTAC
CGACTGGCCGAAGAATATCCCGATTGTCTAATGCTGAACTTTACAATCAA
GTTGATCTCGGACGCGGGCTTCCAGAGCGAGATCACTTCCATTTCGACAG
CGGCACAGCAGATTGAGGTTTTCTCGCGGGTTCTAAAGACCTCGATCGTC
AAATTTCTAAACAATCCGGATGATGTGCACGGTGCCATTCAGGAGTGCGC
ACGAATGGTCTGCCATGGCCAGCACACTTACGTATACTCCCAGGTGCTCA
TCCAGGTCCTCAGCCAGGAGCAGAAGGGTGGGTTCAACATGAAGCGGCTC
TCTCAGGAAATTATTAAATACGCCCTGCAGAACAATCAAAATGTAACGCC
TATTACAATGGCCCTGAATGGTTCGGCAGTCTATCCGCAAGCATGTCAAG
CCCTAACTTCCATGCTCACCCGCAATACACTGAATCCCGCCGATATCACC
GTGCTGTTTCGCAACTACTCCGGTTCCGATCCACCGCCCATCGACTTGAT
ACGAAACCCCCAGTTTCTGGAGCTACTGGTAGACGCGCTCTTTCGTTCCG
GCGTTAAAATCAATCCCGAGCACAAACCGAAGTATATGTTTCTGCTAGCC
TACGCGTCCGCGGTCATCGACCAGCCGGCCAAAAAGCGACCAATGACTGA
GCGCATGCTAAACAAGGAGGAGCTAAAGAGCACCATTCAGGCTATCGAAA
AGGCACACACCATTTGTAATGTGGACCAGGGATCCACCGAGCTAATCGCC
GAGTTGCAAACGCTGTATAATTGCATCAAATATCCTGTGGTGGGAGTTGG
TGTCATTCGGTGGATCGAAAACGTTGTTATGGAGCCTTCATATTTCAAGC
TCTCCACAGACAGCTGTCCCACGCACTTGGCGGTACTGGATGAAGTGGCC
GCCGTTCATCCCACCTTGCAGCAGCAGATCCTCTTCCTGCTCATCCGCTT
ATTTGAGTCCAAGCAGGATGAGCTGGAGATTCTCGTTCAATTGGAAATGA
AGAAAATGATCCTGGACCGAATGGTTAACCTGCTGACGCGCGGCTGCGTT
GTACCCGTTCTCAGATACATAAAGCAGTGCTGCGCCATCGAGGACACAGA
CATTTCGCTAATACGATACTTTGTCACCGAGGTGCTGGAGACTATCACAC
ATCCCTACTCGCCGGAGTTCGTGCAGCTGTTCCTGCCGATGGTGGAGAAC
GAGGAGATCACCGGTACAATGCGCGGCGAGGGCGACAACGATCCCGTGTC
CGAATTTATTGTTCACTGCAAGGCGCATTACACGACTGTATAGATTGTGA
CAATAGAACGTGCTTTACAGGCGACTTCCATTCAAAGACGACCTCAATTA
AGCCCAATTTAAATAACATTCTTTTTGAGTAAACAATTTTTTTAAATATA
ATCTCTTAAGAAAAGTACCCTATTCTTCTATTAGGAAAGAAAAAAAAAAA
AAAAAAA

LD42626.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
TH1-RA 2456 TH1-RA 56..2011 1..1956 9750 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16280155..16280879 842..118 3475 98.6 Minus
chrX 22417052 chrX 16279098..16279579 1761..1280 2305 98.5 Minus
chrX 22417052 chrX 16279648..16280094 1279..833 2190 99.3 Minus
chrX 22417052 chrX 16278852..16279030 1939..1761 880 99.4 Minus
chrX 22417052 chrX 16280993..16281112 120..1 585 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16390453..16391177 842..118 3580 99.6 Minus
X 23542271 X 16389396..16389877 1761..1280 2410 100 Minus
X 23542271 X 16389946..16390392 1279..833 2235 100 Minus
X 23542271 X 16389133..16389328 1956..1761 950 99 Minus
X 23542271 X 16391291..16391410 120..1 600 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16398551..16399275 842..118 3580 99.5 Minus
X 23527363 X 16397494..16397975 1761..1280 2410 100 Minus
X 23527363 X 16398044..16398490 1279..833 2235 100 Minus
X 23527363 X 16397231..16397426 1956..1761 950 98.9 Minus
X 23527363 X 16399389..16399508 120..1 600 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:00:14 has no hits.

LD42626.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:00:58 Download gff for LD42626.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16278852..16279029 1762..1939 99 <- Minus
chrX 16279098..16279579 1280..1761 98 <- Minus
chrX 16279648..16280094 833..1279 99 <- Minus
chrX 16280165..16280877 120..832 99 <- Minus
chrX 16280994..16281112 1..119 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:25:10 Download gff for LD42626.complete
Subject Subject Range Query Range Percent Splice Strand
TH1-RA 1..1737 57..1793 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:16 Download gff for LD42626.complete
Subject Subject Range Query Range Percent Splice Strand
TH1-RA 1..1737 57..1793 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:44:42 Download gff for LD42626.complete
Subject Subject Range Query Range Percent Splice Strand
TH1-RA 1..1737 57..1793 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:47:42 Download gff for LD42626.complete
Subject Subject Range Query Range Percent Splice Strand
TH1-RA 1..1737 57..1793 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:39 Download gff for LD42626.complete
Subject Subject Range Query Range Percent Splice Strand
TH1-RA 1..1737 57..1793 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:10:25 Download gff for LD42626.complete
Subject Subject Range Query Range Percent Splice Strand
TH1-RA 1..1939 1..1939 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:16 Download gff for LD42626.complete
Subject Subject Range Query Range Percent Splice Strand
TH1-RA 1..1939 1..1939 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:44:42 Download gff for LD42626.complete
Subject Subject Range Query Range Percent Splice Strand
TH1-RA 29..1967 1..1939 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:47:42 Download gff for LD42626.complete
Subject Subject Range Query Range Percent Splice Strand
TH1-RA 1..1939 1..1939 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:39 Download gff for LD42626.complete
Subject Subject Range Query Range Percent Splice Strand
TH1-RA 29..1967 1..1939 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:58 Download gff for LD42626.complete
Subject Subject Range Query Range Percent Splice Strand
X 16389150..16389327 1762..1939 100 <- Minus
X 16389396..16389877 1280..1761 100 <- Minus
X 16389946..16390392 833..1279 100 <- Minus
X 16390463..16391175 120..832 100 <- Minus
X 16391292..16391410 1..119 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:58 Download gff for LD42626.complete
Subject Subject Range Query Range Percent Splice Strand
X 16389150..16389327 1762..1939 100 <- Minus
X 16389396..16389877 1280..1761 100 <- Minus
X 16389946..16390392 833..1279 100 <- Minus
X 16390463..16391175 120..832 100 <- Minus
X 16391292..16391410 1..119 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:58 Download gff for LD42626.complete
Subject Subject Range Query Range Percent Splice Strand
X 16389150..16389327 1762..1939 100 <- Minus
X 16389396..16389877 1280..1761 100 <- Minus
X 16389946..16390392 833..1279 100 <- Minus
X 16390463..16391175 120..832 100 <- Minus
X 16391292..16391410 1..119 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:44:42 Download gff for LD42626.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16283183..16283360 1762..1939 100 <- Minus
arm_X 16285325..16285443 1..119 100   Minus
arm_X 16283429..16283910 1280..1761 100 <- Minus
arm_X 16283979..16284425 833..1279 100 <- Minus
arm_X 16284496..16285208 120..832 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:25:43 Download gff for LD42626.complete
Subject Subject Range Query Range Percent Splice Strand
X 16397248..16397425 1762..1939 100 <- Minus
X 16397494..16397975 1280..1761 100 <- Minus
X 16398044..16398490 833..1279 100 <- Minus
X 16398561..16399273 120..832 100 <- Minus
X 16399390..16399508 1..119 100   Minus

LD42626.pep Sequence

Translation from 56 to 1792

> LD42626.pep
MEVEYDDSGWQGRAKGQTNPEETLEDNPQKTIQECLEKFLTPDYIMEPGI
FTQLKRYFQSGGSPEEVISMLSENYKAVAQMANLLAEWLILAGVKVTEVQ
AMVENHLKEMILKSFDPKKADTIFTEEGETPDWLTEMIDHYTWRSLIYRL
AEEYPDCLMLNFTIKLISDAGFQSEITSISTAAQQIEVFSRVLKTSIVKF
LNNPDDVHGAIQECARMVCHGQHTYVYSQVLIQVLSQEQKGGFNMKRLSQ
EIIKYALQNNQNVTPITMALNGSAVYPQACQALTSMLTRNTLNPADITVL
FRNYSGSDPPPIDLIRNPQFLELLVDALFRSGVKINPEHKPKYMFLLAYA
SAVIDQPAKKRPMTERMLNKEELKSTIQAIEKAHTICNVDQGSTELIAEL
QTLYNCIKYPVVGVGVIRWIENVVMEPSYFKLSTDSCPTHLAVLDEVAAV
HPTLQQQILFLLIRLFESKQDELEILVQLEMKKMILDRMVNLLTRGCVVP
VLRYIKQCCAIEDTDISLIRYFVTEVLETITHPYSPEFVQLFLPMVENEE
ITGTMRGEGDNDPVSEFIVHCKAHYTTV*

LD42626.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19568-PA 578 GF19568-PA 1..578 1..578 3061 98.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:19:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19326-PA 578 GG19326-PA 1..578 1..578 3106 99.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:19:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22626-PA 578 GH22626-PA 1..578 1..578 3026 96.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
TH1-PB 578 CG9984-PB 1..578 1..578 2990 100 Plus
TH1-PA 578 CG9984-PA 1..578 1..578 2990 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14305-PA 578 GI14305-PA 1..578 1..578 3038 97.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15890-PA 533 GL15890-PA 1..533 1..578 2699 87.9 Plus
Dper\GL15394-PA 172 GL15394-PA 1..172 407..578 904 97.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22166-PA 578 GA22166-PA 1..578 1..578 3043 97.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13403-PA 578 GM13403-PA 1..578 1..578 3111 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15751-PA 578 GD15751-PA 1..578 1..578 3111 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19362-PA 578 GJ19362-PA 1..578 1..578 3028 97.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25710-PA 578 GK25710-PA 1..578 1..578 3038 97.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15972-PA 578 GE15972-PA 1..578 1..578 3109 99.8 Plus

LD42626.hyp Sequence

Translation from 56 to 1792

> LD42626.hyp
MEVEYDDSGWQGRAKGQTNPEETLEDNPQKTIQECLEKFLTPDYIMEPGI
FTQLKRYFQSGGSPEEVISMLSENYKAVAQMANLLAEWLILAGVKVTEVQ
AMVENHLKEMILKSFDPKKADTIFTEEGETPDWLTEMIDHYTWRSLIYRL
AEEYPDCLMLNFTIKLISDAGFQSEITSISTAAQQIEVFSRVLKTSIVKF
LNNPDDVHGAIQECARMVCHGQHTYVYSQVLIQVLSQEQKGGFNMKRLSQ
EIIKYALQNNQNVTPITMALNGSAVYPQACQALTSMLTRNTLNPADITVL
FRNYSGSDPPPIDLIRNPQFLELLVDALFRSGVKINPEHKPKYMFLLAYA
SAVIDQPAKKRPMTERMLNKEELKSTIQAIEKAHTICNVDQGSTELIAEL
QTLYNCIKYPVVGVGVIRWIENVVMEPSYFKLSTDSCPTHLAVLDEVAAV
HPTLQQQILFLLIRLFESKQDELEILVQLEMKKMILDRMVNLLTRGCVVP
VLRYIKQCCAIEDTDISLIRYFVTEVLETITHPYSPEFVQLFLPMVENEE
ITGTMRGEGDNDPVSEFIVHCKAHYTTV*

LD42626.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
TH1-PB 578 CG9984-PB 1..578 1..578 2990 100 Plus
TH1-PA 578 CG9984-PA 1..578 1..578 2990 100 Plus