BDGP Sequence Production Resources |
Search the DGRC for LD42626
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 426 |
Well: | 26 |
Vector: | pOT2 |
Associated Gene/Transcript | TH1-RA |
Protein status: | LD42626.pep: gold |
Preliminary Size: | 2310 |
Sequenced Size: | 1957 |
Gene | Date | Evidence |
---|---|---|
CG9984 | 2001-01-01 | Release 2 assignment |
CG9984 | 2001-07-04 | Blastp of sequenced clone |
CG9984 | 2003-01-01 | Sim4 clustering to Release 3 |
TH1 | 2008-04-29 | Release 5.5 accounting |
TH1 | 2008-08-15 | Release 5.9 accounting |
TH1 | 2008-12-18 | 5.12 accounting |
1957 bp (1957 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051957
> LD42626.complete TTAATCAAAATAAGAAAAATATTTTTATGTTATTGTAAATAAGTTTTTGA GAAAAAATGGAAGTGGAATACGACGACTCTGGTTGGCAGGGCCGCGCCAA AGGACAAACCAATCCGGAGGAAACGCTTGAGGACAATCCGCAGAAGACGA TACAGGAATGCCTGGAGAAGTTCCTCACACCGGACTACATCATGGAGCCG GGGATATTTACGCAGCTGAAGCGCTACTTTCAGTCGGGCGGATCTCCGGA GGAGGTTATATCGATGCTATCCGAGAACTACAAGGCGGTGGCCCAGATGG CCAACCTGCTTGCGGAATGGCTCATCCTGGCGGGCGTCAAGGTTACCGAA GTCCAGGCCATGGTGGAGAATCATCTCAAGGAAATGATTCTTAAGTCCTT CGATCCCAAGAAGGCGGACACCATATTCACGGAGGAGGGTGAGACGCCCG ACTGGCTAACCGAGATGATCGACCACTATACGTGGCGCTCGCTAATCTAC CGACTGGCCGAAGAATATCCCGATTGTCTAATGCTGAACTTTACAATCAA GTTGATCTCGGACGCGGGCTTCCAGAGCGAGATCACTTCCATTTCGACAG CGGCACAGCAGATTGAGGTTTTCTCGCGGGTTCTAAAGACCTCGATCGTC AAATTTCTAAACAATCCGGATGATGTGCACGGTGCCATTCAGGAGTGCGC ACGAATGGTCTGCCATGGCCAGCACACTTACGTATACTCCCAGGTGCTCA TCCAGGTCCTCAGCCAGGAGCAGAAGGGTGGGTTCAACATGAAGCGGCTC TCTCAGGAAATTATTAAATACGCCCTGCAGAACAATCAAAATGTAACGCC TATTACAATGGCCCTGAATGGTTCGGCAGTCTATCCGCAAGCATGTCAAG CCCTAACTTCCATGCTCACCCGCAATACACTGAATCCCGCCGATATCACC GTGCTGTTTCGCAACTACTCCGGTTCCGATCCACCGCCCATCGACTTGAT ACGAAACCCCCAGTTTCTGGAGCTACTGGTAGACGCGCTCTTTCGTTCCG GCGTTAAAATCAATCCCGAGCACAAACCGAAGTATATGTTTCTGCTAGCC TACGCGTCCGCGGTCATCGACCAGCCGGCCAAAAAGCGACCAATGACTGA GCGCATGCTAAACAAGGAGGAGCTAAAGAGCACCATTCAGGCTATCGAAA AGGCACACACCATTTGTAATGTGGACCAGGGATCCACCGAGCTAATCGCC GAGTTGCAAACGCTGTATAATTGCATCAAATATCCTGTGGTGGGAGTTGG TGTCATTCGGTGGATCGAAAACGTTGTTATGGAGCCTTCATATTTCAAGC TCTCCACAGACAGCTGTCCCACGCACTTGGCGGTACTGGATGAAGTGGCC GCCGTTCATCCCACCTTGCAGCAGCAGATCCTCTTCCTGCTCATCCGCTT ATTTGAGTCCAAGCAGGATGAGCTGGAGATTCTCGTTCAATTGGAAATGA AGAAAATGATCCTGGACCGAATGGTTAACCTGCTGACGCGCGGCTGCGTT GTACCCGTTCTCAGATACATAAAGCAGTGCTGCGCCATCGAGGACACAGA CATTTCGCTAATACGATACTTTGTCACCGAGGTGCTGGAGACTATCACAC ATCCCTACTCGCCGGAGTTCGTGCAGCTGTTCCTGCCGATGGTGGAGAAC GAGGAGATCACCGGTACAATGCGCGGCGAGGGCGACAACGATCCCGTGTC CGAATTTATTGTTCACTGCAAGGCGCATTACACGACTGTATAGATTGTGA CAATAGAACGTGCTTTACAGGCGACTTCCATTCAAAGACGACCTCAATTA AGCCCAATTTAAATAACATTCTTTTTGAGTAAACAATTTTTTTAAATATA ATCTCTTAAGAAAAGTACCCTATTCTTCTATTAGGAAAGAAAAAAAAAAA AAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TH1-RA | 2456 | TH1-RA | 56..2011 | 1..1956 | 9750 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 16280155..16280879 | 842..118 | 3475 | 98.6 | Minus |
chrX | 22417052 | chrX | 16279098..16279579 | 1761..1280 | 2305 | 98.5 | Minus |
chrX | 22417052 | chrX | 16279648..16280094 | 1279..833 | 2190 | 99.3 | Minus |
chrX | 22417052 | chrX | 16278852..16279030 | 1939..1761 | 880 | 99.4 | Minus |
chrX | 22417052 | chrX | 16280993..16281112 | 120..1 | 585 | 99.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 16390453..16391177 | 842..118 | 3580 | 99.6 | Minus |
X | 23542271 | X | 16389396..16389877 | 1761..1280 | 2410 | 100 | Minus |
X | 23542271 | X | 16389946..16390392 | 1279..833 | 2235 | 100 | Minus |
X | 23542271 | X | 16389133..16389328 | 1956..1761 | 950 | 99 | Minus |
X | 23542271 | X | 16391291..16391410 | 120..1 | 600 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 16398551..16399275 | 842..118 | 3580 | 99.5 | Minus |
X | 23527363 | X | 16397494..16397975 | 1761..1280 | 2410 | 100 | Minus |
X | 23527363 | X | 16398044..16398490 | 1279..833 | 2235 | 100 | Minus |
X | 23527363 | X | 16397231..16397426 | 1956..1761 | 950 | 98.9 | Minus |
X | 23527363 | X | 16399389..16399508 | 120..1 | 600 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 16278852..16279029 | 1762..1939 | 99 | <- | Minus |
chrX | 16279098..16279579 | 1280..1761 | 98 | <- | Minus |
chrX | 16279648..16280094 | 833..1279 | 99 | <- | Minus |
chrX | 16280165..16280877 | 120..832 | 99 | <- | Minus |
chrX | 16280994..16281112 | 1..119 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TH1-RA | 1..1737 | 57..1793 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TH1-RA | 1..1737 | 57..1793 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TH1-RA | 1..1737 | 57..1793 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TH1-RA | 1..1737 | 57..1793 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TH1-RA | 1..1737 | 57..1793 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TH1-RA | 1..1939 | 1..1939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TH1-RA | 1..1939 | 1..1939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TH1-RA | 29..1967 | 1..1939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TH1-RA | 1..1939 | 1..1939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TH1-RA | 29..1967 | 1..1939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16389150..16389327 | 1762..1939 | 100 | <- | Minus |
X | 16389396..16389877 | 1280..1761 | 100 | <- | Minus |
X | 16389946..16390392 | 833..1279 | 100 | <- | Minus |
X | 16390463..16391175 | 120..832 | 100 | <- | Minus |
X | 16391292..16391410 | 1..119 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16389150..16389327 | 1762..1939 | 100 | <- | Minus |
X | 16389396..16389877 | 1280..1761 | 100 | <- | Minus |
X | 16389946..16390392 | 833..1279 | 100 | <- | Minus |
X | 16390463..16391175 | 120..832 | 100 | <- | Minus |
X | 16391292..16391410 | 1..119 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16389150..16389327 | 1762..1939 | 100 | <- | Minus |
X | 16389396..16389877 | 1280..1761 | 100 | <- | Minus |
X | 16389946..16390392 | 833..1279 | 100 | <- | Minus |
X | 16390463..16391175 | 120..832 | 100 | <- | Minus |
X | 16391292..16391410 | 1..119 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 16283183..16283360 | 1762..1939 | 100 | <- | Minus |
arm_X | 16285325..16285443 | 1..119 | 100 | Minus | |
arm_X | 16283429..16283910 | 1280..1761 | 100 | <- | Minus |
arm_X | 16283979..16284425 | 833..1279 | 100 | <- | Minus |
arm_X | 16284496..16285208 | 120..832 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16397248..16397425 | 1762..1939 | 100 | <- | Minus |
X | 16397494..16397975 | 1280..1761 | 100 | <- | Minus |
X | 16398044..16398490 | 833..1279 | 100 | <- | Minus |
X | 16398561..16399273 | 120..832 | 100 | <- | Minus |
X | 16399390..16399508 | 1..119 | 100 | Minus |
Translation from 56 to 1792
> LD42626.pep MEVEYDDSGWQGRAKGQTNPEETLEDNPQKTIQECLEKFLTPDYIMEPGI FTQLKRYFQSGGSPEEVISMLSENYKAVAQMANLLAEWLILAGVKVTEVQ AMVENHLKEMILKSFDPKKADTIFTEEGETPDWLTEMIDHYTWRSLIYRL AEEYPDCLMLNFTIKLISDAGFQSEITSISTAAQQIEVFSRVLKTSIVKF LNNPDDVHGAIQECARMVCHGQHTYVYSQVLIQVLSQEQKGGFNMKRLSQ EIIKYALQNNQNVTPITMALNGSAVYPQACQALTSMLTRNTLNPADITVL FRNYSGSDPPPIDLIRNPQFLELLVDALFRSGVKINPEHKPKYMFLLAYA SAVIDQPAKKRPMTERMLNKEELKSTIQAIEKAHTICNVDQGSTELIAEL QTLYNCIKYPVVGVGVIRWIENVVMEPSYFKLSTDSCPTHLAVLDEVAAV HPTLQQQILFLLIRLFESKQDELEILVQLEMKKMILDRMVNLLTRGCVVP VLRYIKQCCAIEDTDISLIRYFVTEVLETITHPYSPEFVQLFLPMVENEE ITGTMRGEGDNDPVSEFIVHCKAHYTTV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19568-PA | 578 | GF19568-PA | 1..578 | 1..578 | 3061 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19326-PA | 578 | GG19326-PA | 1..578 | 1..578 | 3106 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22626-PA | 578 | GH22626-PA | 1..578 | 1..578 | 3026 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TH1-PB | 578 | CG9984-PB | 1..578 | 1..578 | 2990 | 100 | Plus |
TH1-PA | 578 | CG9984-PA | 1..578 | 1..578 | 2990 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14305-PA | 578 | GI14305-PA | 1..578 | 1..578 | 3038 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15890-PA | 533 | GL15890-PA | 1..533 | 1..578 | 2699 | 87.9 | Plus |
Dper\GL15394-PA | 172 | GL15394-PA | 1..172 | 407..578 | 904 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22166-PA | 578 | GA22166-PA | 1..578 | 1..578 | 3043 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13403-PA | 578 | GM13403-PA | 1..578 | 1..578 | 3111 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15751-PA | 578 | GD15751-PA | 1..578 | 1..578 | 3111 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19362-PA | 578 | GJ19362-PA | 1..578 | 1..578 | 3028 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25710-PA | 578 | GK25710-PA | 1..578 | 1..578 | 3038 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15972-PA | 578 | GE15972-PA | 1..578 | 1..578 | 3109 | 99.8 | Plus |
Translation from 56 to 1792
> LD42626.hyp MEVEYDDSGWQGRAKGQTNPEETLEDNPQKTIQECLEKFLTPDYIMEPGI FTQLKRYFQSGGSPEEVISMLSENYKAVAQMANLLAEWLILAGVKVTEVQ AMVENHLKEMILKSFDPKKADTIFTEEGETPDWLTEMIDHYTWRSLIYRL AEEYPDCLMLNFTIKLISDAGFQSEITSISTAAQQIEVFSRVLKTSIVKF LNNPDDVHGAIQECARMVCHGQHTYVYSQVLIQVLSQEQKGGFNMKRLSQ EIIKYALQNNQNVTPITMALNGSAVYPQACQALTSMLTRNTLNPADITVL FRNYSGSDPPPIDLIRNPQFLELLVDALFRSGVKINPEHKPKYMFLLAYA SAVIDQPAKKRPMTERMLNKEELKSTIQAIEKAHTICNVDQGSTELIAEL QTLYNCIKYPVVGVGVIRWIENVVMEPSYFKLSTDSCPTHLAVLDEVAAV HPTLQQQILFLLIRLFESKQDELEILVQLEMKKMILDRMVNLLTRGCVVP VLRYIKQCCAIEDTDISLIRYFVTEVLETITHPYSPEFVQLFLPMVENEE ITGTMRGEGDNDPVSEFIVHCKAHYTTV*