Clone LD42637 Report

Search the DGRC for LD42637

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:426
Well:37
Vector:pOT2
Associated Gene/TranscriptCG16892-RA
Protein status:LD42637.pep: gold
Preliminary Size:1757
Sequenced Size:1556

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16892 2001-01-01 Release 2 assignment
CG16892 2001-07-04 Blastp of sequenced clone
CG16892 2003-01-01 Sim4 clustering to Release 3
CG16892 2008-04-29 Release 5.5 accounting
CG16892 2008-08-15 Release 5.9 accounting
CG16892 2008-12-18 5.12 accounting

Clone Sequence Records

LD42637.complete Sequence

1556 bp (1556 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051958

> LD42637.complete
TTTTTTCTCAACTGAACTGAATTGAATGTGAATAGTCTGCAATTATGGCG
GCCCTGAGCAACCTAAAACAGTGTCCGCCGTTCTCCACGCTGCCGGATCT
GGCGCTGCGGCACAATCACATCCCAGAGCTGGAACGCTATCCGCAGATAA
ACCTGAACAGCGAACTTCTGGCCAATCCGGCTGGTCAGCGGTACTACGGC
GGACAGAGCTTCGTATCTGTGAATGAGGGTGTCCTAAAGCGCATAGCTCG
CAGCTTCTTTAATGGCGGATTCTGGAAGACGCTGGAGGAGGCACGCAGCC
CAGAGACCAGGGAGCAGGCGCCGCTTATTGCCCAGGCGGGTGATTTAATC
GCACAATTTCTGGGCCTGGCCACCGGCCTGAGGATCCTCCCGCACACCCA
GCAGCTTAGTGCAGAGCGTATTGCTCAGTTCGTGGAGACCAGGGATTGGC
TCAACAGCGATGTGCGCTATCTTGCCTGGAATCAGCACTTCTTTTGCTTA
GCCGTAGCCGGTGTAGACGATGTGGTGCGCATCTACACAAAGAGTTCCAG
TGCGACCACTGCCACTGTTTTAAAGAGTCCATCCCAAACGCAGATCACCT
GCATGGCGTGGCGTCCACTCTGCGCTTCCGAGATCGTGATAGGTTGTCGG
CAGGGTCTGTGTTTCTGGGAAGTGGACAGCACTTTGCATTTGGGACGCAC
AAATGCACCCAGCGAGATTTTTAAATACCCAAACAATCTGCCAATAACCT
CGATGCAGTGGAACAAGGATGGCACCCAGTTGGCCACCGCCTCAATAGGA
GATCGTTCCATTATTATCTGGCAGCCGGACACCGGAATGATGCAGCCACT
CAAGCGTTTGGGTCCGCCGGGCTCGCTGCTGAAGTGGTCGCCGGATAATG
ACTGGCTGTTCGCAGCCACCGTGGATCGGGTGTTCCGCGTGTGGAACTGC
CACCAGCAATGGACCACCGAGCGATGGGTGTGCGGTCCCGGAGGCTATGT
CCAAACAGCCTGTTGGTCGCCCTGCGGTCGCTTCCTGCTCTTCGTCAGCA
GTGCCGAACCGATTCTCTACCGCCTGCAGTTCGTGCAACAGAGTCTGCTA
TCCTCTTCGGCGGATGAGAAGGAAATCCTGCCCATTGCAGATCTAAATGC
TTGTAGCATTGATGCGAATCGCACGCTTGTCGGTGGTCCCGCCCAGCAGC
TTGCTTGGGATCCGCATGGCAATTATCTGGTAGTCACATTCAAGGCGACC
AACTGCATCGCCGTCTTCCGCACCTTCATACAGAAGTTCGATCTGCAGAT
TTCGGCGGCTTACTATCTGAGCGGCGAGACGGCGGCGGAGCACCCGAGCT
TCATCTGCTTCCAGCCACTCTACGAGGATAACGATCGCTCCGTGCTGACG
ATCGCCTGGTCGTCGGGCCGCATCCAGTACTACGCCTTCGACTGATCTTA
AAGCTTAGTGATTTTCATAGTAATACATTTTTTGATTTGGTTTTTGTAAG
CGTTAATACACAGTTAAACAGGTTACCCTTAAAAAAAAAAAAAAAAAAAA
AAAAAA

LD42637.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG16892-RA 1913 CG16892-RA 92..1623 1..1532 7645 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9165295..9165737 1..443 2200 99.8 Plus
chrX 22417052 chrX 9166752..9167157 1105..1510 2030 100 Plus
chrX 22417052 chrX 9166139..9166515 728..1104 1885 100 Plus
chrX 22417052 chrX 9165794..9166081 440..727 1440 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9273470..9273912 1..443 2215 100 Plus
X 23542271 X 9274927..9275354 1105..1532 2125 99.8 Plus
X 23542271 X 9274314..9274690 728..1104 1885 100 Plus
X 23542271 X 9273969..9274256 440..727 1440 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9281568..9282010 1..443 2215 100 Plus
X 23527363 X 9283025..9283452 1105..1532 2125 99.7 Plus
X 23527363 X 9282412..9282788 728..1104 1885 100 Plus
X 23527363 X 9282067..9282354 440..727 1440 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:48:22 has no hits.

LD42637.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:49:10 Download gff for LD42637.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9165295..9165736 1..442 99 -> Plus
chrX 9165797..9166081 443..727 100 -> Plus
chrX 9166139..9166515 728..1104 100 -> Plus
chrX 9166752..9167164 1105..1517 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:25:11 Download gff for LD42637.complete
Subject Subject Range Query Range Percent Splice Strand
CG16892-RA 1..1401 45..1445 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:04 Download gff for LD42637.complete
Subject Subject Range Query Range Percent Splice Strand
CG16892-RA 1..1401 45..1445 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:13:14 Download gff for LD42637.complete
Subject Subject Range Query Range Percent Splice Strand
CG16892-RB 1..1401 45..1445 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:47:30 Download gff for LD42637.complete
Subject Subject Range Query Range Percent Splice Strand
CG16892-RA 1..1401 45..1445 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:41:34 Download gff for LD42637.complete
Subject Subject Range Query Range Percent Splice Strand
CG16892-RB 1..1401 45..1445 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:10:06 Download gff for LD42637.complete
Subject Subject Range Query Range Percent Splice Strand
CG16892-RA 54..1583 1..1530 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:04 Download gff for LD42637.complete
Subject Subject Range Query Range Percent Splice Strand
CG16892-RA 54..1583 1..1530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:13:14 Download gff for LD42637.complete
Subject Subject Range Query Range Percent Splice Strand
CG16892-RB 58..1587 1..1530 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:47:30 Download gff for LD42637.complete
Subject Subject Range Query Range Percent Splice Strand
CG16892-RA 54..1583 1..1530 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:41:34 Download gff for LD42637.complete
Subject Subject Range Query Range Percent Splice Strand
CG16892-RB 58..1587 1..1530 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:49:10 Download gff for LD42637.complete
Subject Subject Range Query Range Percent Splice Strand
X 9273470..9273911 1..442 100 -> Plus
X 9273972..9274256 443..727 100 -> Plus
X 9274314..9274690 728..1104 100 -> Plus
X 9274927..9275352 1105..1530 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:49:10 Download gff for LD42637.complete
Subject Subject Range Query Range Percent Splice Strand
X 9273470..9273911 1..442 100 -> Plus
X 9273972..9274256 443..727 100 -> Plus
X 9274314..9274690 728..1104 100 -> Plus
X 9274927..9275352 1105..1530 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:49:10 Download gff for LD42637.complete
Subject Subject Range Query Range Percent Splice Strand
X 9273470..9273911 1..442 100 -> Plus
X 9273972..9274256 443..727 100 -> Plus
X 9274314..9274690 728..1104 100 -> Plus
X 9274927..9275352 1105..1530 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:13:14 Download gff for LD42637.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9167503..9167944 1..442 100 -> Plus
arm_X 9168005..9168289 443..727 100 -> Plus
arm_X 9168347..9168723 728..1104 100 -> Plus
arm_X 9168960..9169385 1105..1530 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:25:29 Download gff for LD42637.complete
Subject Subject Range Query Range Percent Splice Strand
X 9281568..9282009 1..442 100 -> Plus
X 9282070..9282354 443..727 100 -> Plus
X 9282412..9282788 728..1104 100 -> Plus
X 9283025..9283450 1105..1530 99   Plus

LD42637.hyp Sequence

Translation from 44 to 1444

> LD42637.hyp
MAALSNLKQCPPFSTLPDLALRHNHIPELERYPQINLNSELLANPAGQRY
YGGQSFVSVNEGVLKRIARSFFNGGFWKTLEEARSPETREQAPLIAQAGD
LIAQFLGLATGLRILPHTQQLSAERIAQFVETRDWLNSDVRYLAWNQHFF
CLAVAGVDDVVRIYTKSSSATTATVLKSPSQTQITCMAWRPLCASEIVIG
CRQGLCFWEVDSTLHLGRTNAPSEIFKYPNNLPITSMQWNKDGTQLATAS
IGDRSIIIWQPDTGMMQPLKRLGPPGSLLKWSPDNDWLFAATVDRVFRVW
NCHQQWTTERWVCGPGGYVQTACWSPCGRFLLFVSSAEPILYRLQFVQQS
LLSSSADEKEILPIADLNACSIDANRTLVGGPAQQLAWDPHGNYLVVTFK
ATNCIAVFRTFIQKFDLQISAAYYLSGETAAEHPSFICFQPLYEDNDRSV
LTIAWSSGRIQYYAFD*

LD42637.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG16892-PA 466 CG16892-PA 1..466 1..466 2492 100 Plus
CG16892-PB 466 CG16892-PB 1..466 1..466 2492 100 Plus
CG13137-PB 440 CG13137-PB 79..423 124..463 290 27.6 Plus

LD42637.pep Sequence

Translation from 44 to 1444

> LD42637.pep
MAALSNLKQCPPFSTLPDLALRHNHIPELERYPQINLNSELLANPAGQRY
YGGQSFVSVNEGVLKRIARSFFNGGFWKTLEEARSPETREQAPLIAQAGD
LIAQFLGLATGLRILPHTQQLSAERIAQFVETRDWLNSDVRYLAWNQHFF
CLAVAGVDDVVRIYTKSSSATTATVLKSPSQTQITCMAWRPLCASEIVIG
CRQGLCFWEVDSTLHLGRTNAPSEIFKYPNNLPITSMQWNKDGTQLATAS
IGDRSIIIWQPDTGMMQPLKRLGPPGSLLKWSPDNDWLFAATVDRVFRVW
NCHQQWTTERWVCGPGGYVQTACWSPCGRFLLFVSSAEPILYRLQFVQQS
LLSSSADEKEILPIADLNACSIDANRTLVGGPAQQLAWDPHGNYLVVTFK
ATNCIAVFRTFIQKFDLQISAAYYLSGETAAEHPSFICFQPLYEDNDRSV
LTIAWSSGRIQYYAFD*

LD42637.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19074-PA 466 GF19074-PA 1..466 1..466 2014 78.6 Plus
Dana\GF15746-PA 403 GF15746-PA 26..313 124..400 245 25.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18308-PA 468 GG18308-PA 1..468 1..466 2357 93.2 Plus
Dere\GG10088-PA 436 GG10088-PA 63..423 108..465 300 28.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11853-PA 445 GH11853-PA 1..445 26..466 1410 60.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
Aladin-PA 466 CG16892-PA 1..466 1..466 2492 100 Plus
Aladin-PB 466 CG16892-PB 1..466 1..466 2492 100 Plus
CG13137-PB 440 CG13137-PB 79..423 124..463 290 27.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14335-PA 470 GI14335-PA 1..470 1..466 1659 63.8 Plus
Dmoj\GI16209-PA 448 GI16209-PA 45..416 94..461 169 24.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16498-PA 429 GL16498-PA 1..429 1..466 1735 68.8 Plus
Dper\GL25761-PA 389 GL25761-PA 85..385 153..461 295 28.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14201-PA 280 GA14201-PA 1..280 187..466 1286 82.5 Plus
Dpse\GA25433-PA 389 GA25433-PA 85..385 153..461 293 28.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22467-PA 466 GM22467-PA 1..466 1..466 2454 97.6 Plus
Dsec\GM17971-PA 339 GM17971-PA 1..322 152..463 269 27.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16950-PA 443 GD16950-PA 1..443 1..466 2306 92.7 Plus
Dsim\GD23661-PA 339 GD23661-PA 1..322 152..463 279 28.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19389-PA 470 GJ19389-PA 1..469 1..465 1720 67.1 Plus
Dvir\GJ15900-PA 453 GJ15900-PA 76..421 113..461 211 24.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:18:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25372-PA 466 GK25372-PA 1..466 1..466 1877 72.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:18:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17787-PA 468 GE17787-PA 1..468 1..466 2373 93.4 Plus
Dyak\GE18903-PA 420 GE18903-PA 59..405 124..465 289 27.4 Plus