BDGP Sequence Production Resources |
Search the DGRC for LD42647
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 426 |
Well: | 47 |
Vector: | pOT2 |
Associated Gene/Transcript | Cerk-RA |
Protein status: | LD42647.pep: gold |
Sequenced Size: | 2777 |
Gene | Date | Evidence |
---|---|---|
CG16708 | 2008-04-29 | Release 5.5 accounting |
CG16708 | 2008-04-29 | Picked prior to 5.5 |
CG16708 | 2008-08-15 | Release 5.9 accounting |
CG16708 | 2008-12-18 | 5.12 accounting |
2777 bp assembled on 2007-10-25
GenBank Submission: BT031139
> LD42647.complete AGCGGACGTACACTTCGCTTCGATTTGTCCGCCTGTGTTTTTTGTAACGG CCACGGAAGTGCATTTCTGGTGTTCTCGTAAATTCTTTGTGCTCCAGCGA GTAGGGGGTGGAAAGTGTGGCTAAAACGGGAAACCGGGAGATGCCGAAAC GCCATTAGCACCAATTGCACGTCGGCTATTTTCCAATTGTGTGTGTGCAT TTGTTTGTGTGCAAGCGAAAAAGTGCAAGTGTGCGAAACTGCAATGCACA TCCGTATCGAGTTTTCTTGATTTCCCCATAAACAGACGGAAAAACAGCGC AACGACTTCGAAAGTGCAGCCGTGTTTGTATGGATAAACGTTCCTACCTG GCCACCAGTACCGACAAAGCGGACGCCATAGCGGGAGACGGAGACGTGGG CCAGTCAAGATGACGCAGACCAAGCAGCCAGCAGGGCGGTCGTCCACCTC GGCCGGGGATTTTGTAGCCCCCATTAGCTCTACGAGTGCCTCCAAGTTCA CGCCCTGCTCCGCCTCCGACCACAATGTCCTGCTGAACAACTTCCAGCTT AAGAAGAAGAGCTACAGGGTCCTGCTTCACGGACAGCAGTTGGTTTGGGA GCGTCTGCAGAAGATCAAGCAATCGCCCCAAGGAAACGAGGCCAAGGCAC CGTTGCCGCCGGACTCGCCAGCTCAACCAGGCGGAATCTGCTCTTATGGA CCACAAAGCCACGTGCTCCACCTGGACGATGTGGTTAGCATAAGGAGCGG GGACACCAAGGCGAGCTCCCTCAAACCGCCTTCGCCGCCAGGCTCGGAAC GCAGTTCCGGATGCAGTGGCGATGTTGCTCAAGGGAAGCCTACCAGTCAA TACCTGACCATCAACTATGCCATGAGGCTGAGCAAGTCCCAAACGGATTG CAATCGGTGGGAGCTAAGGAGACTCACCTTCTTCAACTCGGATCCCTACA TAGTGAGGCAGTGGGACCAGGAGCTGCAAATCCGTCTGCATAGCTCCTCC CCCACCCGGATGCGAGTGCGCCGCCTTTTGGTCTTTATAAACCCCTATGG AGGTCGCAAGGCGGGAGCTCAGACCTATGAGCGCCATGTGAGACCTATTT TCCAGCTTGCCGGCGTAGACGCCACGTGTATCACCACTCAGAGGGCAAAC CAAGTGAAGGACATACTTCTGAGCCATGATCTGGGAGTATACGATGCGGT TTGCTGTGTCGGAGGCGATGGCACCGTAGCAGAGGTCATCAACGGACTGA TATTCCGTCAAATGCGAGAGTTGGGACTGGACGAACAGCGGCCACCATAC ATTCCAAGACCGGCTCTGCCAGTGGGTGTGATTCCCGCTGGCAGCACCGA CACCATTGCGTATAGTATGCACGGCACGGCGGATGTGAGGACAGCGGCTA TCCATGTGATTCTGGGCCAGCATCGGGGATTGGATGTGTGCAGTGTGAGC AATGGGCAGTCCCTGCTCAGATTCTGTGCCAGTGTCCTGAGCTACGGGTA CCTGGGCGATGTGGCAGCCCAGAGCGAGAACTACCGCTGGATGGGACCGC GCCGGTACGAGTACAGTGGCGTCAAGGCCTTCCTGAATAATCGCGGCTAT GACGCCGAACTGAGAATGTTAGAAGAGCCCGATCTTCTACTGACCACGCC GCTGGAGGACATTCCGCAGAGTCCGGATAGTGTGTGCTCGCTGGGAGAGT CAGTGCCATCCGTCTGCTATGCCAATTGCCAGCGCTGCAGCTTCGCCAGC AGCATACAGGAACAGCGATCCTCATTGTTCATCCAAGAGGAATCTAAAGA GGCAGAGCGCAATCAGCAGGTAGAAACAGAGGACTCTCATCTAGCCGCCA GTGAAGCAGCACTCCTGAGGCCTCGTCCGCGTCCAGGCAATCTTCGATTG CCCACTGGCTCCATTTCATCAATGAGGAACCTCGGCAACGATCAGTGGAA GGTTGTGCGGGGCAATTTCTTTATGATCTGCGGCGCGAACATAACCTGCG CCTGCGCCAGGAGTCCCAATGGCATCTCCCGTTACAGTCATCTGGGTGAT GGTTGCCTGGACCTGATTCTCGTGAAAAAGACCTCACTGCTCAACAACGT GCGTTTTCTGCTCAACACGGCGGGCAGAAGTGGTGATATTCGCAATTTGC CTTTTGTAGAGGTATATCGCACAAGGGAATTCCGGTTCAGAACTTTTTCT GCCAGCGAGGAGGACTACAGCTTGGCAGGGTCTTGTCAGCCGATTACACC GCCTGAAGAAATGACCGCCCACTCCTCCTCGACGGAGTTTTCCAGCTGGA ACTGTGATGGAGAGGTGGTGACCGACCTGGACATAACCATGCGATCGCAT TGTCAGCTCATCGAGGTCTTCATGCGGGGTCCCCATTCCTACAGCAAGCC CCTCAAGGGCGGCACCACGCCCACAACCCCAGCTAGCTCTAGCGACAATG TTTACTGCTGCTGCAAGGACTAGAAGCTTTAACCCCATAGAATTAGCATC AATCGTTGGCCGTGACATGTAGCTCTTAGTTTTGCGTAGGGTATCCTTAT TCGTATATGTATCGTGTTAAAGAGCGGGTCTCCCCGTCATTGTTTTTAGC ATAGCTCAATAAAGCAACTGATATTATCGACTGTATTATGGCATCTGAAA GATGCGGCAGCAACCTAAACATTCCCCTCGGAAGCATTATGCACATACCT ATATATTTACAAATTGTGTACTGGTATACTGGCAATAAAAATGTATTTAT ATGTCTTCAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG16708-RA | 2917 | CG16708-RA | 86..2846 | 1..2761 | 13805 | 100 | Plus |
CG16708-RB | 2472 | CG16708-RB | 62..2465 | 358..2761 | 12020 | 100 | Plus |
CG16708.b | 2859 | CG16708.b | 450..2852 | 359..2761 | 12015 | 100 | Plus |
CG16708.b | 2859 | CG16708.b | 28..385 | 1..358 | 1790 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 1185642..1187425 | 2140..357 | 8905 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 1184536..1184951 | 2758..2343 | 2080 | 100 | Minus |
chr3R | 27901430 | chr3R | 1193584..1193941 | 358..1 | 1790 | 100 | Minus |
chr3R | 27901430 | chr3R | 1185011..1185213 | 2343..2141 | 1015 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 5359979..5361762 | 2140..357 | 8920 | 100 | Minus |
3R | 32079331 | 3R | 5358870..5359288 | 2761..2343 | 2095 | 100 | Minus |
3R | 32079331 | 3R | 5367921..5368278 | 358..1 | 1790 | 100 | Minus |
3R | 32079331 | 3R | 5359348..5359550 | 2343..2141 | 1015 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 5100810..5102593 | 2140..357 | 8920 | 100 | Minus |
3R | 31820162 | 3R | 5099701..5100119 | 2761..2343 | 2095 | 100 | Minus |
3R | 31820162 | 3R | 5108752..5109109 | 358..1 | 1790 | 100 | Minus |
3R | 31820162 | 3R | 5100179..5100381 | 2343..2141 | 1015 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1184536..1184950 | 2344..2758 | 100 | <- | Minus |
chr3R | 1185011..1185213 | 2141..2343 | 100 | <- | Minus |
chr3R | 1185642..1187423 | 359..2140 | 99 | <- | Minus |
chr3R | 1193584..1193941 | 1..358 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16708-RB | 1..2064 | 410..2473 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cerk-RB | 1..2064 | 410..2473 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cerk-RA | 1..2064 | 410..2473 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16708-RB | 1..2064 | 410..2473 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cerk-RA | 1..2064 | 410..2473 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16708-RA | 28..2785 | 1..2758 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cerk-RA | 28..2785 | 1..2758 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cerk-RA | 29..2786 | 1..2758 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16708-RA | 28..2785 | 1..2758 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cerk-RA | 29..2786 | 1..2758 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5358873..5359287 | 2344..2758 | 100 | <- | Minus |
3R | 5359348..5359550 | 2141..2343 | 100 | <- | Minus |
3R | 5359979..5361760 | 359..2140 | 100 | <- | Minus |
3R | 5367921..5368278 | 1..358 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5358873..5359287 | 2344..2758 | 100 | <- | Minus |
3R | 5359348..5359550 | 2141..2343 | 100 | <- | Minus |
3R | 5359979..5361760 | 359..2140 | 100 | <- | Minus |
3R | 5367921..5368278 | 1..358 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5358873..5359287 | 2344..2758 | 100 | <- | Minus |
3R | 5359348..5359550 | 2141..2343 | 100 | <- | Minus |
3R | 5359979..5361760 | 359..2140 | 100 | <- | Minus |
3R | 5367921..5368278 | 1..358 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1185070..1185272 | 2141..2343 | 100 | <- | Minus |
arm_3R | 1184595..1185009 | 2344..2758 | 100 | <- | Minus |
arm_3R | 1185701..1187482 | 359..2140 | 100 | <- | Minus |
arm_3R | 1193643..1194000 | 1..358 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5099704..5100118 | 2344..2758 | 100 | <- | Minus |
3R | 5100179..5100381 | 2141..2343 | 100 | <- | Minus |
3R | 5100810..5102591 | 359..2140 | 100 | <- | Minus |
3R | 5108752..5109109 | 1..358 | 100 | Minus |
Translation from 409 to 2472
> LD42647.pep MTQTKQPAGRSSTSAGDFVAPISSTSASKFTPCSASDHNVLLNNFQLKKK SYRVLLHGQQLVWERLQKIKQSPQGNEAKAPLPPDSPAQPGGICSYGPQS HVLHLDDVVSIRSGDTKASSLKPPSPPGSERSSGCSGDVAQGKPTSQYLT INYAMRLSKSQTDCNRWELRRLTFFNSDPYIVRQWDQELQIRLHSSSPTR MRVRRLLVFINPYGGRKAGAQTYERHVRPIFQLAGVDATCITTQRANQVK DILLSHDLGVYDAVCCVGGDGTVAEVINGLIFRQMRELGLDEQRPPYIPR PALPVGVIPAGSTDTIAYSMHGTADVRTAAIHVILGQHRGLDVCSVSNGQ SLLRFCASVLSYGYLGDVAAQSENYRWMGPRRYEYSGVKAFLNNRGYDAE LRMLEEPDLLLTTPLEDIPQSPDSVCSLGESVPSVCYANCQRCSFASSIQ EQRSSLFIQEESKEAERNQQVETEDSHLAASEAALLRPRPRPGNLRLPTG SISSMRNLGNDQWKVVRGNFFMICGANITCACARSPNGISRYSHLGDGCL DLILVKKTSLLNNVRFLLNTAGRSGDIRNLPFVEVYRTREFRFRTFSASE EDYSLAGSCQPITPPEEMTAHSSSTEFSSWNCDGEVVTDLDITMRSHCQL IEVFMRGPHSYSKPLKGGTTPTTPASSSDNVYCCCKD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17718-PA | 690 | GF17718-PA | 1..690 | 1..687 | 3098 | 85.9 | Plus |
Dana\GF24262-PA | 659 | GF24262-PA | 111..623 | 113..593 | 240 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11053-PA | 687 | GG11053-PA | 1..687 | 1..687 | 3520 | 95.3 | Plus |
Dere\GG14899-PA | 661 | GG14899-PA | 173..586 | 169..556 | 226 | 26.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22641-PA | 646 | GH22641-PA | 9..646 | 39..687 | 2237 | 68.2 | Plus |
Dgri\GH14568-PA | 655 | GH14568-PA | 164..619 | 169..593 | 209 | 23.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cerk-PB | 687 | CG16708-PB | 1..687 | 1..687 | 3620 | 100 | Plus |
Cerk-PA | 687 | CG16708-PA | 1..687 | 1..687 | 3620 | 100 | Plus |
Sk2-PA | 661 | CG32484-PA | 12..628 | 24..596 | 218 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10206-PA | 693 | GI10206-PA | 31..693 | 33..687 | 2319 | 67.3 | Plus |
Dmoj\GI13895-PA | 647 | GI13895-PA | 157..614 | 169..596 | 208 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22186-PA | 692 | GL22186-PA | 1..692 | 1..687 | 2820 | 76.3 | Plus |
Dper\GL20779-PA | 644 | GL20779-PA | 167..390 | 184..404 | 206 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14094-PA | 690 | GA14094-PA | 1..690 | 1..687 | 2821 | 76.9 | Plus |
Dpse\GA16938-PA | 658 | GA16938-PA | 181..404 | 184..404 | 210 | 28.8 | Plus |
Dpse\GA14519-PA | 673 | GA14519-PA | 82..401 | 101..404 | 177 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10643-PA | 687 | GM10643-PA | 1..687 | 1..687 | 3625 | 98 | Plus |
Dsec\GM14525-PA | 637 | GM14525-PA | 12..411 | 24..404 | 219 | 25.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19624-PA | 687 | GD19624-PA | 1..687 | 1..687 | 3640 | 98.4 | Plus |
Dsim\GD13722-PA | 661 | GD13722-PA | 12..628 | 24..596 | 225 | 24.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10046-PA | 692 | GJ10046-PA | 22..692 | 33..687 | 2380 | 69 | Plus |
Dvir\GJ11750-PA | 648 | GJ11750-PA | 114..612 | 127..593 | 209 | 23.6 | Plus |
Dvir\GJ18113-PA | 409 | GJ18113-PA | 56..262 | 204..407 | 164 | 25.1 | Plus |
Translation from 409 to 2472
> LD42647.hyp MTQTKQPAGRSSTSAGDFVAPISSTSASKFTPCSASDHNVLLNNFQLKKK SYRVLLHGQQLVWERLQKIKQSPQGNEAKAPLPPDSPAQPGGICSYGPQS HVLHLDDVVSIRSGDTKASSLKPPSPPGSERSSGCSGDVAQGKPTSQYLT INYAMRLSKSQTDCNRWELRRLTFFNSDPYIVRQWDQELQIRLHSSSPTR MRVRRLLVFINPYGGRKAGAQTYERHVRPIFQLAGVDATCITTQRANQVK DILLSHDLGVYDAVCCVGGDGTVAEVINGLIFRQMRELGLDEQRPPYIPR PALPVGVIPAGSTDTIAYSMHGTADVRTAAIHVILGQHRGLDVCSVSNGQ SLLRFCASVLSYGYLGDVAAQSENYRWMGPRRYEYSGVKAFLNNRGYDAE LRMLEEPDLLLTTPLEDIPQSPDSVCSLGESVPSVCYANCQRCSFASSIQ EQRSSLFIQEESKEAERNQQVETEDSHLAASEAALLRPRPRPGNLRLPTG SISSMRNLGNDQWKVVRGNFFMICGANITCACARSPNGISRYSHLGDGCL DLILVKKTSLLNNVRFLLNTAGRSGDIRNLPFVEVYRTREFRFRTFSASE EDYSLAGSCQPITPPEEMTAHSSSTEFSSWNCDGEVVTDLDITMRSHCQL IEVFMRGPHSYSKPLKGGTTPTTPASSSDNVYCCCKD*