Clone LD42647 Report

Search the DGRC for LD42647

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:426
Well:47
Vector:pOT2
Associated Gene/TranscriptCerk-RA
Protein status:LD42647.pep: gold
Sequenced Size:2777

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16708 2008-04-29 Release 5.5 accounting
CG16708 2008-04-29 Picked prior to 5.5
CG16708 2008-08-15 Release 5.9 accounting
CG16708 2008-12-18 5.12 accounting

Clone Sequence Records

LD42647.complete Sequence

2777 bp assembled on 2007-10-25

GenBank Submission: BT031139

> LD42647.complete
AGCGGACGTACACTTCGCTTCGATTTGTCCGCCTGTGTTTTTTGTAACGG
CCACGGAAGTGCATTTCTGGTGTTCTCGTAAATTCTTTGTGCTCCAGCGA
GTAGGGGGTGGAAAGTGTGGCTAAAACGGGAAACCGGGAGATGCCGAAAC
GCCATTAGCACCAATTGCACGTCGGCTATTTTCCAATTGTGTGTGTGCAT
TTGTTTGTGTGCAAGCGAAAAAGTGCAAGTGTGCGAAACTGCAATGCACA
TCCGTATCGAGTTTTCTTGATTTCCCCATAAACAGACGGAAAAACAGCGC
AACGACTTCGAAAGTGCAGCCGTGTTTGTATGGATAAACGTTCCTACCTG
GCCACCAGTACCGACAAAGCGGACGCCATAGCGGGAGACGGAGACGTGGG
CCAGTCAAGATGACGCAGACCAAGCAGCCAGCAGGGCGGTCGTCCACCTC
GGCCGGGGATTTTGTAGCCCCCATTAGCTCTACGAGTGCCTCCAAGTTCA
CGCCCTGCTCCGCCTCCGACCACAATGTCCTGCTGAACAACTTCCAGCTT
AAGAAGAAGAGCTACAGGGTCCTGCTTCACGGACAGCAGTTGGTTTGGGA
GCGTCTGCAGAAGATCAAGCAATCGCCCCAAGGAAACGAGGCCAAGGCAC
CGTTGCCGCCGGACTCGCCAGCTCAACCAGGCGGAATCTGCTCTTATGGA
CCACAAAGCCACGTGCTCCACCTGGACGATGTGGTTAGCATAAGGAGCGG
GGACACCAAGGCGAGCTCCCTCAAACCGCCTTCGCCGCCAGGCTCGGAAC
GCAGTTCCGGATGCAGTGGCGATGTTGCTCAAGGGAAGCCTACCAGTCAA
TACCTGACCATCAACTATGCCATGAGGCTGAGCAAGTCCCAAACGGATTG
CAATCGGTGGGAGCTAAGGAGACTCACCTTCTTCAACTCGGATCCCTACA
TAGTGAGGCAGTGGGACCAGGAGCTGCAAATCCGTCTGCATAGCTCCTCC
CCCACCCGGATGCGAGTGCGCCGCCTTTTGGTCTTTATAAACCCCTATGG
AGGTCGCAAGGCGGGAGCTCAGACCTATGAGCGCCATGTGAGACCTATTT
TCCAGCTTGCCGGCGTAGACGCCACGTGTATCACCACTCAGAGGGCAAAC
CAAGTGAAGGACATACTTCTGAGCCATGATCTGGGAGTATACGATGCGGT
TTGCTGTGTCGGAGGCGATGGCACCGTAGCAGAGGTCATCAACGGACTGA
TATTCCGTCAAATGCGAGAGTTGGGACTGGACGAACAGCGGCCACCATAC
ATTCCAAGACCGGCTCTGCCAGTGGGTGTGATTCCCGCTGGCAGCACCGA
CACCATTGCGTATAGTATGCACGGCACGGCGGATGTGAGGACAGCGGCTA
TCCATGTGATTCTGGGCCAGCATCGGGGATTGGATGTGTGCAGTGTGAGC
AATGGGCAGTCCCTGCTCAGATTCTGTGCCAGTGTCCTGAGCTACGGGTA
CCTGGGCGATGTGGCAGCCCAGAGCGAGAACTACCGCTGGATGGGACCGC
GCCGGTACGAGTACAGTGGCGTCAAGGCCTTCCTGAATAATCGCGGCTAT
GACGCCGAACTGAGAATGTTAGAAGAGCCCGATCTTCTACTGACCACGCC
GCTGGAGGACATTCCGCAGAGTCCGGATAGTGTGTGCTCGCTGGGAGAGT
CAGTGCCATCCGTCTGCTATGCCAATTGCCAGCGCTGCAGCTTCGCCAGC
AGCATACAGGAACAGCGATCCTCATTGTTCATCCAAGAGGAATCTAAAGA
GGCAGAGCGCAATCAGCAGGTAGAAACAGAGGACTCTCATCTAGCCGCCA
GTGAAGCAGCACTCCTGAGGCCTCGTCCGCGTCCAGGCAATCTTCGATTG
CCCACTGGCTCCATTTCATCAATGAGGAACCTCGGCAACGATCAGTGGAA
GGTTGTGCGGGGCAATTTCTTTATGATCTGCGGCGCGAACATAACCTGCG
CCTGCGCCAGGAGTCCCAATGGCATCTCCCGTTACAGTCATCTGGGTGAT
GGTTGCCTGGACCTGATTCTCGTGAAAAAGACCTCACTGCTCAACAACGT
GCGTTTTCTGCTCAACACGGCGGGCAGAAGTGGTGATATTCGCAATTTGC
CTTTTGTAGAGGTATATCGCACAAGGGAATTCCGGTTCAGAACTTTTTCT
GCCAGCGAGGAGGACTACAGCTTGGCAGGGTCTTGTCAGCCGATTACACC
GCCTGAAGAAATGACCGCCCACTCCTCCTCGACGGAGTTTTCCAGCTGGA
ACTGTGATGGAGAGGTGGTGACCGACCTGGACATAACCATGCGATCGCAT
TGTCAGCTCATCGAGGTCTTCATGCGGGGTCCCCATTCCTACAGCAAGCC
CCTCAAGGGCGGCACCACGCCCACAACCCCAGCTAGCTCTAGCGACAATG
TTTACTGCTGCTGCAAGGACTAGAAGCTTTAACCCCATAGAATTAGCATC
AATCGTTGGCCGTGACATGTAGCTCTTAGTTTTGCGTAGGGTATCCTTAT
TCGTATATGTATCGTGTTAAAGAGCGGGTCTCCCCGTCATTGTTTTTAGC
ATAGCTCAATAAAGCAACTGATATTATCGACTGTATTATGGCATCTGAAA
GATGCGGCAGCAACCTAAACATTCCCCTCGGAAGCATTATGCACATACCT
ATATATTTACAAATTGTGTACTGGTATACTGGCAATAAAAATGTATTTAT
ATGTCTTCAAAAAAAAAAAAAAAAAAA

LD42647.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG16708-RA 2917 CG16708-RA 86..2846 1..2761 13805 100 Plus
CG16708-RB 2472 CG16708-RB 62..2465 358..2761 12020 100 Plus
CG16708.b 2859 CG16708.b 450..2852 359..2761 12015 100 Plus
CG16708.b 2859 CG16708.b 28..385 1..358 1790 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1185642..1187425 2140..357 8905 99.9 Minus
chr3R 27901430 chr3R 1184536..1184951 2758..2343 2080 100 Minus
chr3R 27901430 chr3R 1193584..1193941 358..1 1790 100 Minus
chr3R 27901430 chr3R 1185011..1185213 2343..2141 1015 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5359979..5361762 2140..357 8920 100 Minus
3R 32079331 3R 5358870..5359288 2761..2343 2095 100 Minus
3R 32079331 3R 5367921..5368278 358..1 1790 100 Minus
3R 32079331 3R 5359348..5359550 2343..2141 1015 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5100810..5102593 2140..357 8920 100 Minus
3R 31820162 3R 5099701..5100119 2761..2343 2095 100 Minus
3R 31820162 3R 5108752..5109109 358..1 1790 100 Minus
3R 31820162 3R 5100179..5100381 2343..2141 1015 100 Minus
Blast to na_te.dros performed on 2019-03-15 17:26:36 has no hits.

LD42647.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:27:52 Download gff for LD42647.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1184536..1184950 2344..2758 100 <- Minus
chr3R 1185011..1185213 2141..2343 100 <- Minus
chr3R 1185642..1187423 359..2140 99 <- Minus
chr3R 1193584..1193941 1..358 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:25:12 Download gff for LD42647.complete
Subject Subject Range Query Range Percent Splice Strand
CG16708-RB 1..2064 410..2473 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:04:59 Download gff for LD42647.complete
Subject Subject Range Query Range Percent Splice Strand
Cerk-RB 1..2064 410..2473 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:36:32 Download gff for LD42647.complete
Subject Subject Range Query Range Percent Splice Strand
Cerk-RA 1..2064 410..2473 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:51:19 Download gff for LD42647.complete
Subject Subject Range Query Range Percent Splice Strand
CG16708-RB 1..2064 410..2473 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:56 Download gff for LD42647.complete
Subject Subject Range Query Range Percent Splice Strand
Cerk-RA 1..2064 410..2473 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:57:31 Download gff for LD42647.complete
Subject Subject Range Query Range Percent Splice Strand
CG16708-RA 28..2785 1..2758 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:04:59 Download gff for LD42647.complete
Subject Subject Range Query Range Percent Splice Strand
Cerk-RA 28..2785 1..2758 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:36:32 Download gff for LD42647.complete
Subject Subject Range Query Range Percent Splice Strand
Cerk-RA 29..2786 1..2758 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:51:19 Download gff for LD42647.complete
Subject Subject Range Query Range Percent Splice Strand
CG16708-RA 28..2785 1..2758 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:56 Download gff for LD42647.complete
Subject Subject Range Query Range Percent Splice Strand
Cerk-RA 29..2786 1..2758 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:27:52 Download gff for LD42647.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5358873..5359287 2344..2758 100 <- Minus
3R 5359348..5359550 2141..2343 100 <- Minus
3R 5359979..5361760 359..2140 100 <- Minus
3R 5367921..5368278 1..358 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:27:52 Download gff for LD42647.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5358873..5359287 2344..2758 100 <- Minus
3R 5359348..5359550 2141..2343 100 <- Minus
3R 5359979..5361760 359..2140 100 <- Minus
3R 5367921..5368278 1..358 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:27:52 Download gff for LD42647.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5358873..5359287 2344..2758 100 <- Minus
3R 5359348..5359550 2141..2343 100 <- Minus
3R 5359979..5361760 359..2140 100 <- Minus
3R 5367921..5368278 1..358 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:36:32 Download gff for LD42647.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1185070..1185272 2141..2343 100 <- Minus
arm_3R 1184595..1185009 2344..2758 100 <- Minus
arm_3R 1185701..1187482 359..2140 100 <- Minus
arm_3R 1193643..1194000 1..358 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:57:07 Download gff for LD42647.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5099704..5100118 2344..2758 100 <- Minus
3R 5100179..5100381 2141..2343 100 <- Minus
3R 5100810..5102591 359..2140 100 <- Minus
3R 5108752..5109109 1..358 100   Minus

LD42647.pep Sequence

Translation from 409 to 2472

> LD42647.pep
MTQTKQPAGRSSTSAGDFVAPISSTSASKFTPCSASDHNVLLNNFQLKKK
SYRVLLHGQQLVWERLQKIKQSPQGNEAKAPLPPDSPAQPGGICSYGPQS
HVLHLDDVVSIRSGDTKASSLKPPSPPGSERSSGCSGDVAQGKPTSQYLT
INYAMRLSKSQTDCNRWELRRLTFFNSDPYIVRQWDQELQIRLHSSSPTR
MRVRRLLVFINPYGGRKAGAQTYERHVRPIFQLAGVDATCITTQRANQVK
DILLSHDLGVYDAVCCVGGDGTVAEVINGLIFRQMRELGLDEQRPPYIPR
PALPVGVIPAGSTDTIAYSMHGTADVRTAAIHVILGQHRGLDVCSVSNGQ
SLLRFCASVLSYGYLGDVAAQSENYRWMGPRRYEYSGVKAFLNNRGYDAE
LRMLEEPDLLLTTPLEDIPQSPDSVCSLGESVPSVCYANCQRCSFASSIQ
EQRSSLFIQEESKEAERNQQVETEDSHLAASEAALLRPRPRPGNLRLPTG
SISSMRNLGNDQWKVVRGNFFMICGANITCACARSPNGISRYSHLGDGCL
DLILVKKTSLLNNVRFLLNTAGRSGDIRNLPFVEVYRTREFRFRTFSASE
EDYSLAGSCQPITPPEEMTAHSSSTEFSSWNCDGEVVTDLDITMRSHCQL
IEVFMRGPHSYSKPLKGGTTPTTPASSSDNVYCCCKD*

LD42647.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17718-PA 690 GF17718-PA 1..690 1..687 3098 85.9 Plus
Dana\GF24262-PA 659 GF24262-PA 111..623 113..593 240 24.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11053-PA 687 GG11053-PA 1..687 1..687 3520 95.3 Plus
Dere\GG14899-PA 661 GG14899-PA 173..586 169..556 226 26.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22641-PA 646 GH22641-PA 9..646 39..687 2237 68.2 Plus
Dgri\GH14568-PA 655 GH14568-PA 164..619 169..593 209 23.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
Cerk-PB 687 CG16708-PB 1..687 1..687 3620 100 Plus
Cerk-PA 687 CG16708-PA 1..687 1..687 3620 100 Plus
Sk2-PA 661 CG32484-PA 12..628 24..596 218 23.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10206-PA 693 GI10206-PA 31..693 33..687 2319 67.3 Plus
Dmoj\GI13895-PA 647 GI13895-PA 157..614 169..596 208 23.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22186-PA 692 GL22186-PA 1..692 1..687 2820 76.3 Plus
Dper\GL20779-PA 644 GL20779-PA 167..390 184..404 206 28.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14094-PA 690 GA14094-PA 1..690 1..687 2821 76.9 Plus
Dpse\GA16938-PA 658 GA16938-PA 181..404 184..404 210 28.8 Plus
Dpse\GA14519-PA 673 GA14519-PA 82..401 101..404 177 24.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10643-PA 687 GM10643-PA 1..687 1..687 3625 98 Plus
Dsec\GM14525-PA 637 GM14525-PA 12..411 24..404 219 25.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19624-PA 687 GD19624-PA 1..687 1..687 3640 98.4 Plus
Dsim\GD13722-PA 661 GD13722-PA 12..628 24..596 225 24.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10046-PA 692 GJ10046-PA 22..692 33..687 2380 69 Plus
Dvir\GJ11750-PA 648 GJ11750-PA 114..612 127..593 209 23.6 Plus
Dvir\GJ18113-PA 409 GJ18113-PA 56..262 204..407 164 25.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14278-PA 669 GK14278-PA 1..669 1..687 2407 66.8 Plus
Dwil\GK12320-PA 695 GK12320-PA 156..659 128..593 255 25 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25291-PA 680 GE25291-PA 2..680 4..687 3421 93.4 Plus
Dyak\GE20353-PA 661 GE20353-PA 173..411 169..404 218 28.3 Plus

LD42647.hyp Sequence

Translation from 409 to 2472

> LD42647.hyp
MTQTKQPAGRSSTSAGDFVAPISSTSASKFTPCSASDHNVLLNNFQLKKK
SYRVLLHGQQLVWERLQKIKQSPQGNEAKAPLPPDSPAQPGGICSYGPQS
HVLHLDDVVSIRSGDTKASSLKPPSPPGSERSSGCSGDVAQGKPTSQYLT
INYAMRLSKSQTDCNRWELRRLTFFNSDPYIVRQWDQELQIRLHSSSPTR
MRVRRLLVFINPYGGRKAGAQTYERHVRPIFQLAGVDATCITTQRANQVK
DILLSHDLGVYDAVCCVGGDGTVAEVINGLIFRQMRELGLDEQRPPYIPR
PALPVGVIPAGSTDTIAYSMHGTADVRTAAIHVILGQHRGLDVCSVSNGQ
SLLRFCASVLSYGYLGDVAAQSENYRWMGPRRYEYSGVKAFLNNRGYDAE
LRMLEEPDLLLTTPLEDIPQSPDSVCSLGESVPSVCYANCQRCSFASSIQ
EQRSSLFIQEESKEAERNQQVETEDSHLAASEAALLRPRPRPGNLRLPTG
SISSMRNLGNDQWKVVRGNFFMICGANITCACARSPNGISRYSHLGDGCL
DLILVKKTSLLNNVRFLLNTAGRSGDIRNLPFVEVYRTREFRFRTFSASE
EDYSLAGSCQPITPPEEMTAHSSSTEFSSWNCDGEVVTDLDITMRSHCQL
IEVFMRGPHSYSKPLKGGTTPTTPASSSDNVYCCCKD*

LD42647.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
Cerk-PB 687 CG16708-PB 1..687 1..687 3620 100 Plus
Cerk-PA 687 CG16708-PA 1..687 1..687 3620 100 Plus
Sk2-PA 661 CG32484-PA 12..628 24..596 218 23.8 Plus