Clone LD42725 Report

Search the DGRC for LD42725

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:427
Well:25
Vector:pOT2
Associated Gene/TranscriptCG1620-RB
Protein status:LD42725.pep: gold
Sequenced Size:2210

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1620 2003-01-01 Sim4 clustering to Release 3
CG1620 2008-04-29 Release 5.5 accounting
CG1620 2008-08-15 Release 5.9 accounting
CG1620 2008-12-18 5.12 accounting

Clone Sequence Records

LD42725.complete Sequence

2210 bp (2210 high quality bases) assembled on 2005-07-07

GenBank Submission: BT023773

> LD42725.complete
GAAAATGATGGAGTTCGGGAAATCGTCGGATCACTCCCAGCACAGCGCTT
CCGAGGCGTCGGCGGACTCCGGCAGCCTGGCAAACAGCGATCTGGCCGTC
ACGCCCACCAAGCGGGAGCGCCGCAAGTCGCCGGCCACCAGTTCGGACAA
CAACAGCACCAGCGTCCAACCGCCAATGTCGCCGTCGTCCTCGGTGGCGG
ACACCACCTTTGAGCCCACCATCGACATGATGGTCAACGACTTTGACGAC
GAGGCCACGCTGAACGAGGAGGAGGCTCTGGCGGACATGGAGGCGCACAG
TGCCGAGGACGAGATCGCCACGCTGCGCGAGGAGAGCGAGATGCCCATCG
AGGAGCTGCTGGCCAAATATGGCGGGACAGCGGCTTCGCCGGCAATGAGC
AGCTCGAACCGTTCCGGCAGCAGTTCACGACGTGCACGTAGGGCCACAAA
GCGCCAGTACCAGGAACTGGACACGGAGATGGCTCACACGTCGACCTCCA
CTTCGAGCAGCACATCGCAACTGGAGAAACACGACGGCATAGACCAGGAG
GAGGAACCCAAGGAGGAGGCCGATAAGCTAGCATCACCCCCAGAATCAGG
AGAAGCTTCGTCCGTGGACACGGAGGATGCGCAAAAGTATGAGGGGATCA
AGAAGCAGCATCGCTCACATTTGCTGGACCTGTATCCAGATGAATCCTTC
GTCGATCTGGCGCCCACATGCGGAGAGGAGACGGAAAGATTCACTCCACT
GCAAACACTGTTCGATGAAGTGGAGGCCGAGGAGGAGGAGGAAAGCGAAT
CCGAGTTGGACGATGCTCGGAAGATAATAATGGTGGGTCACGACTATCAG
GCTGAGATCCCAGAGGGGCTGTCGCAATATGGCGATATATTGCCATATGA
GAACGAGGATCAGTTGATCTGGGAGCCCAGCCAAGTCAGCGAGCGCGAGG
TGGAGGAATATCTGGCCAAGATACAGGAAACCCGATCGATAGTTCCGCCG
GATGACGGGTCAGAGACTACGGCGGGCGAGGAAGGCGCAGCTACAGGTGC
TACTATCGAACCGCCGGCTCCCATTACAGCTCCAGCCACGCCTCCGAGGG
CTCCGCTTGCGACAAGTGGCGCTGGCGATCAGGAGCTGGTGGTAAAGGAT
AATGAGCAGGCGCTCCATCTGCTTGTCCAGTGCGGTTACGACTTCAAAGA
AGCCCTACGACGCAAGCGCATGAACGTCCTGCCTCTCACTGATACCATGA
GCAGCTGGTCCGAGGACGAGTGCCTAAAGTTCGAGGAGGGCATTCAGCGG
TTTGGCAAGGACTTCTATCAGATACGTCAAAACCAGGTAAAGGAGCGTCC
ATTGCCTGCGGACCGCCCTAGCAAGTAATCTATGGGCTCGTTGGGCTCTT
TCAGGTGCGCACTAGAACCATGCGCGAGCTGGTCCATTTCTACTATCTGT
GGAAGAAGAGTGAGCGCCGGGATCAGAGCTTTGCTTTAAACGACACCATC
GATCACATGGATGTTTTCATCAACGAGGCGGGCGGTGGCAACGGAAGTGG
TAATGGAAATGGTGCCGGGATCGTATCGGGCACCGCTAACAGTAATGGTA
GCTGCTCACCGCATAGCAGCAATGGTCACAGCAATGGGGATTTGTCTGCC
CTGGAGAAGGATACCATCGCCAGTCCTCGAAAACCCGCCTCTAAGAGCTA
TTCTATTATGACCGGGAGTCAGGCGGTAGGTAATCCTTCCGGGGGGAACC
GAAAGCGATGCTCATCCGCATCTCTGCCCCTGGAGGACGAGGACAACAAC
GTCGAGGAAGAACCCAGCCTGTCCACAGTGTAAACGACATCTCTATCACA
ATCACCATCATCATTATCATAACCGAGCGCAGGCGCTTTCGATTCGGTTG
GGCCAGGCGATGTATTTGCAGGGCGCTTCATTACCATTACCACTCACTAT
AAATATGCATACTGTACGTGTAGTATATACCATATGTCTAAACATATATA
TTCCAGATTCTTAAATCGACATCTCTCATAACCCGTAAAGAATTTCTCTA
TTGTTAAGTGTGCGATTCGTCTATTTGTTACATGTGCGTGTGGATTCCGG
AACCAAGTACTTATCGCTTATATATACAATATATTTTCGCTCAATCCTTG
AGTTTCGTTGAATGTCAATAAATGTAATATGTATATCTGTAAAAAAAAAA
AAAAAAAAAA

LD42725.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1620-RB 2439 CG1620-RB 202..2394 1..2193 10965 100 Plus
CG1620-RA 2529 CG1620-RA 202..1539 1..1338 6690 100 Plus
CG1620-RA 2529 CG1620-RA 1535..2326 1402..2193 3960 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3381364..3382813 2190..741 7250 100 Minus
chr2R 21145070 chr2R 3382878..3383617 740..1 3700 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7494009..7495461 2193..741 7265 100 Minus
2R 25286936 2R 7495526..7496265 740..1 3700 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7495208..7496660 2193..741 7265 100 Minus
2R 25260384 2R 7496725..7497464 740..1 3700 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:19:51 has no hits.

LD42725.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:20:59 Download gff for LD42725.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3381364..3382813 741..2190 97 <- Minus
chr2R 3382878..3383617 1..740 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:25:16 Download gff for LD42725.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RA 1..1334 5..1338 100 == Plus
CG1620-RA 1335..1761 1407..1833 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:56:30 Download gff for LD42725.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RB 1..1374 5..1378 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:38:46 Download gff for LD42725.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RB 1..1374 5..1378 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:37:14 Download gff for LD42725.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RA 1..1334 5..1338 100 == Plus
CG1620-RA 1335..1761 1407..1833 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:12:21 Download gff for LD42725.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RB 1..1374 5..1378 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:34:36 Download gff for LD42725.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RA 202..1539 1..1338 100 == Plus
CG1620-RA 1540..2323 1407..2190 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:56:30 Download gff for LD42725.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RB 202..2391 1..2190 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:46 Download gff for LD42725.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RB 83..2272 1..2190 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:37:14 Download gff for LD42725.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RA 202..1539 1..1338 100 == Plus
CG1620-RA 1540..2323 1407..2190 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:12:21 Download gff for LD42725.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RB 83..2272 1..2190 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:20:59 Download gff for LD42725.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7494012..7495461 741..2190 100 <- Minus
2R 7495526..7496265 1..740 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:20:59 Download gff for LD42725.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7494012..7495461 741..2190 100 <- Minus
2R 7495526..7496265 1..740 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:20:59 Download gff for LD42725.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7494012..7495461 741..2190 100 <- Minus
2R 7495526..7496265 1..740 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:46 Download gff for LD42725.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3381517..3382966 741..2190 100 <- Minus
arm_2R 3383031..3383770 1..740 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:15:51 Download gff for LD42725.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7495211..7496660 741..2190 100 <- Minus
2R 7496725..7497464 1..740 100   Minus

LD42725.hyp Sequence

Translation from 0 to 1377

> LD42725.hyp
KMMEFGKSSDHSQHSASEASADSGSLANSDLAVTPTKRERRKSPATSSDN
NSTSVQPPMSPSSSVADTTFEPTIDMMVNDFDDEATLNEEEALADMEAHS
AEDEIATLREESEMPIEELLAKYGGTAASPAMSSSNRSGSSSRRARRATK
RQYQELDTEMAHTSTSTSSSTSQLEKHDGIDQEEEPKEEADKLASPPESG
EASSVDTEDAQKYEGIKKQHRSHLLDLYPDESFVDLAPTCGEETERFTPL
QTLFDEVEAEEEEESESELDDARKIIMVGHDYQAEIPEGLSQYGDILPYE
NEDQLIWEPSQVSEREVEEYLAKIQETRSIVPPDDGSETTAGEEGAATGA
TIEPPAPITAPATPPRAPLATSGAGDQELVVKDNEQALHLLVQCGYDFKE
ALRRKRMNVLPLTDTMSSWSEDECLKFEEGIQRFGKDFYQIRQNQVKERP
LPADRPSK*

LD42725.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1620-PB 457 CG1620-PB 1..457 2..458 2335 100 Plus
CG1620-PC 586 CG1620-PC 1..450 2..451 2278 99.1 Plus
CG1620-PA 586 CG1620-PA 1..450 2..451 2278 99.1 Plus

LD42725.pep Sequence

Translation from 1 to 1377

> LD42725.pep
KMMEFGKSSDHSQHSASEASADSGSLANSDLAVTPTKRERRKSPATSSDN
NSTSVQPPMSPSSSVADTTFEPTIDMMVNDFDDEATLNEEEALADMEAHS
AEDEIATLREESEMPIEELLAKYGGTAASPAMSSSNRSGSSSRRARRATK
RQYQELDTEMAHTSTSTSSSTSQLEKHDGIDQEEEPKEEADKLASPPESG
EASSVDTEDAQKYEGIKKQHRSHLLDLYPDESFVDLAPTCGEETERFTPL
QTLFDEVEAEEEEESESELDDARKIIMVGHDYQAEIPEGLSQYGDILPYE
NEDQLIWEPSQVSEREVEEYLAKIQETRSIVPPDDGSETTAGEEGAATGA
TIEPPAPITAPATPPRAPLATSGAGDQELVVKDNEQALHLLVQCGYDFKE
ALRRKRMNVLPLTDTMSSWSEDECLKFEEGIQRFGKDFYQIRQNQVKERP
LPADRPSK*

LD42725.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13676-PA 575 GF13676-PA 1..448 2..451 1372 74.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10741-PA 584 GG10741-PA 1..448 2..451 1873 92.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20595-PA 594 GH20595-PA 10..423 34..451 1027 58.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1620-PB 457 CG1620-PB 1..457 2..458 2335 100 Plus
CG1620-PC 586 CG1620-PC 1..450 2..451 2278 99.1 Plus
CG1620-PA 586 CG1620-PA 1..450 2..451 2278 99.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19795-PA 551 GI19795-PA 1..412 26..451 986 53.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20117-PA 585 GL20117-PA 1..453 3..451 1348 66.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24935-PA 585 GA24935-PA 1..453 3..451 1351 66.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20787-PA 273 GM20787-PA 56..137 370..451 435 91.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15307-PA 192 GD15307-PA 1..181 2..182 894 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18450-PA 586 GJ18450-PA 1..434 26..451 1025 58.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10702-PA 571 GK10702-PA 6..453 12..451 1061 56 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23937-PA 580 GE23937-PA 1..446 2..451 1838 90 Plus