BDGP Sequence Production Resources |
Search the DGRC for LD42725
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 427 |
Well: | 25 |
Vector: | pOT2 |
Associated Gene/Transcript | CG1620-RB |
Protein status: | LD42725.pep: gold |
Sequenced Size: | 2210 |
Gene | Date | Evidence |
---|---|---|
CG1620 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1620 | 2008-04-29 | Release 5.5 accounting |
CG1620 | 2008-08-15 | Release 5.9 accounting |
CG1620 | 2008-12-18 | 5.12 accounting |
2210 bp (2210 high quality bases) assembled on 2005-07-07
GenBank Submission: BT023773
> LD42725.complete GAAAATGATGGAGTTCGGGAAATCGTCGGATCACTCCCAGCACAGCGCTT CCGAGGCGTCGGCGGACTCCGGCAGCCTGGCAAACAGCGATCTGGCCGTC ACGCCCACCAAGCGGGAGCGCCGCAAGTCGCCGGCCACCAGTTCGGACAA CAACAGCACCAGCGTCCAACCGCCAATGTCGCCGTCGTCCTCGGTGGCGG ACACCACCTTTGAGCCCACCATCGACATGATGGTCAACGACTTTGACGAC GAGGCCACGCTGAACGAGGAGGAGGCTCTGGCGGACATGGAGGCGCACAG TGCCGAGGACGAGATCGCCACGCTGCGCGAGGAGAGCGAGATGCCCATCG AGGAGCTGCTGGCCAAATATGGCGGGACAGCGGCTTCGCCGGCAATGAGC AGCTCGAACCGTTCCGGCAGCAGTTCACGACGTGCACGTAGGGCCACAAA GCGCCAGTACCAGGAACTGGACACGGAGATGGCTCACACGTCGACCTCCA CTTCGAGCAGCACATCGCAACTGGAGAAACACGACGGCATAGACCAGGAG GAGGAACCCAAGGAGGAGGCCGATAAGCTAGCATCACCCCCAGAATCAGG AGAAGCTTCGTCCGTGGACACGGAGGATGCGCAAAAGTATGAGGGGATCA AGAAGCAGCATCGCTCACATTTGCTGGACCTGTATCCAGATGAATCCTTC GTCGATCTGGCGCCCACATGCGGAGAGGAGACGGAAAGATTCACTCCACT GCAAACACTGTTCGATGAAGTGGAGGCCGAGGAGGAGGAGGAAAGCGAAT CCGAGTTGGACGATGCTCGGAAGATAATAATGGTGGGTCACGACTATCAG GCTGAGATCCCAGAGGGGCTGTCGCAATATGGCGATATATTGCCATATGA GAACGAGGATCAGTTGATCTGGGAGCCCAGCCAAGTCAGCGAGCGCGAGG TGGAGGAATATCTGGCCAAGATACAGGAAACCCGATCGATAGTTCCGCCG GATGACGGGTCAGAGACTACGGCGGGCGAGGAAGGCGCAGCTACAGGTGC TACTATCGAACCGCCGGCTCCCATTACAGCTCCAGCCACGCCTCCGAGGG CTCCGCTTGCGACAAGTGGCGCTGGCGATCAGGAGCTGGTGGTAAAGGAT AATGAGCAGGCGCTCCATCTGCTTGTCCAGTGCGGTTACGACTTCAAAGA AGCCCTACGACGCAAGCGCATGAACGTCCTGCCTCTCACTGATACCATGA GCAGCTGGTCCGAGGACGAGTGCCTAAAGTTCGAGGAGGGCATTCAGCGG TTTGGCAAGGACTTCTATCAGATACGTCAAAACCAGGTAAAGGAGCGTCC ATTGCCTGCGGACCGCCCTAGCAAGTAATCTATGGGCTCGTTGGGCTCTT TCAGGTGCGCACTAGAACCATGCGCGAGCTGGTCCATTTCTACTATCTGT GGAAGAAGAGTGAGCGCCGGGATCAGAGCTTTGCTTTAAACGACACCATC GATCACATGGATGTTTTCATCAACGAGGCGGGCGGTGGCAACGGAAGTGG TAATGGAAATGGTGCCGGGATCGTATCGGGCACCGCTAACAGTAATGGTA GCTGCTCACCGCATAGCAGCAATGGTCACAGCAATGGGGATTTGTCTGCC CTGGAGAAGGATACCATCGCCAGTCCTCGAAAACCCGCCTCTAAGAGCTA TTCTATTATGACCGGGAGTCAGGCGGTAGGTAATCCTTCCGGGGGGAACC GAAAGCGATGCTCATCCGCATCTCTGCCCCTGGAGGACGAGGACAACAAC GTCGAGGAAGAACCCAGCCTGTCCACAGTGTAAACGACATCTCTATCACA ATCACCATCATCATTATCATAACCGAGCGCAGGCGCTTTCGATTCGGTTG GGCCAGGCGATGTATTTGCAGGGCGCTTCATTACCATTACCACTCACTAT AAATATGCATACTGTACGTGTAGTATATACCATATGTCTAAACATATATA TTCCAGATTCTTAAATCGACATCTCTCATAACCCGTAAAGAATTTCTCTA TTGTTAAGTGTGCGATTCGTCTATTTGTTACATGTGCGTGTGGATTCCGG AACCAAGTACTTATCGCTTATATATACAATATATTTTCGCTCAATCCTTG AGTTTCGTTGAATGTCAATAAATGTAATATGTATATCTGTAAAAAAAAAA AAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 3381364..3382813 | 741..2190 | 97 | <- | Minus |
chr2R | 3382878..3383617 | 1..740 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1620-RA | 1..1334 | 5..1338 | 100 | == | Plus |
CG1620-RA | 1335..1761 | 1407..1833 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1620-RB | 1..1374 | 5..1378 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1620-RB | 1..1374 | 5..1378 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1620-RA | 1..1334 | 5..1338 | 100 | == | Plus |
CG1620-RA | 1335..1761 | 1407..1833 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1620-RB | 1..1374 | 5..1378 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1620-RA | 202..1539 | 1..1338 | 100 | == | Plus |
CG1620-RA | 1540..2323 | 1407..2190 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1620-RB | 202..2391 | 1..2190 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1620-RB | 83..2272 | 1..2190 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1620-RA | 202..1539 | 1..1338 | 100 | == | Plus |
CG1620-RA | 1540..2323 | 1407..2190 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1620-RB | 83..2272 | 1..2190 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7494012..7495461 | 741..2190 | 100 | <- | Minus |
2R | 7495526..7496265 | 1..740 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7494012..7495461 | 741..2190 | 100 | <- | Minus |
2R | 7495526..7496265 | 1..740 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7494012..7495461 | 741..2190 | 100 | <- | Minus |
2R | 7495526..7496265 | 1..740 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 3381517..3382966 | 741..2190 | 100 | <- | Minus |
arm_2R | 3383031..3383770 | 1..740 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7495211..7496660 | 741..2190 | 100 | <- | Minus |
2R | 7496725..7497464 | 1..740 | 100 | Minus |
Translation from 0 to 1377
> LD42725.hyp KMMEFGKSSDHSQHSASEASADSGSLANSDLAVTPTKRERRKSPATSSDN NSTSVQPPMSPSSSVADTTFEPTIDMMVNDFDDEATLNEEEALADMEAHS AEDEIATLREESEMPIEELLAKYGGTAASPAMSSSNRSGSSSRRARRATK RQYQELDTEMAHTSTSTSSSTSQLEKHDGIDQEEEPKEEADKLASPPESG EASSVDTEDAQKYEGIKKQHRSHLLDLYPDESFVDLAPTCGEETERFTPL QTLFDEVEAEEEEESESELDDARKIIMVGHDYQAEIPEGLSQYGDILPYE NEDQLIWEPSQVSEREVEEYLAKIQETRSIVPPDDGSETTAGEEGAATGA TIEPPAPITAPATPPRAPLATSGAGDQELVVKDNEQALHLLVQCGYDFKE ALRRKRMNVLPLTDTMSSWSEDECLKFEEGIQRFGKDFYQIRQNQVKERP LPADRPSK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1620-PB | 457 | CG1620-PB | 1..457 | 2..458 | 2335 | 100 | Plus |
CG1620-PC | 586 | CG1620-PC | 1..450 | 2..451 | 2278 | 99.1 | Plus |
CG1620-PA | 586 | CG1620-PA | 1..450 | 2..451 | 2278 | 99.1 | Plus |
Translation from 1 to 1377
> LD42725.pep KMMEFGKSSDHSQHSASEASADSGSLANSDLAVTPTKRERRKSPATSSDN NSTSVQPPMSPSSSVADTTFEPTIDMMVNDFDDEATLNEEEALADMEAHS AEDEIATLREESEMPIEELLAKYGGTAASPAMSSSNRSGSSSRRARRATK RQYQELDTEMAHTSTSTSSSTSQLEKHDGIDQEEEPKEEADKLASPPESG EASSVDTEDAQKYEGIKKQHRSHLLDLYPDESFVDLAPTCGEETERFTPL QTLFDEVEAEEEEESESELDDARKIIMVGHDYQAEIPEGLSQYGDILPYE NEDQLIWEPSQVSEREVEEYLAKIQETRSIVPPDDGSETTAGEEGAATGA TIEPPAPITAPATPPRAPLATSGAGDQELVVKDNEQALHLLVQCGYDFKE ALRRKRMNVLPLTDTMSSWSEDECLKFEEGIQRFGKDFYQIRQNQVKERP LPADRPSK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13676-PA | 575 | GF13676-PA | 1..448 | 2..451 | 1372 | 74.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10741-PA | 584 | GG10741-PA | 1..448 | 2..451 | 1873 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20595-PA | 594 | GH20595-PA | 10..423 | 34..451 | 1027 | 58.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1620-PB | 457 | CG1620-PB | 1..457 | 2..458 | 2335 | 100 | Plus |
CG1620-PC | 586 | CG1620-PC | 1..450 | 2..451 | 2278 | 99.1 | Plus |
CG1620-PA | 586 | CG1620-PA | 1..450 | 2..451 | 2278 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19795-PA | 551 | GI19795-PA | 1..412 | 26..451 | 986 | 53.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20117-PA | 585 | GL20117-PA | 1..453 | 3..451 | 1348 | 66.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24935-PA | 585 | GA24935-PA | 1..453 | 3..451 | 1351 | 66.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20787-PA | 273 | GM20787-PA | 56..137 | 370..451 | 435 | 91.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15307-PA | 192 | GD15307-PA | 1..181 | 2..182 | 894 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18450-PA | 586 | GJ18450-PA | 1..434 | 26..451 | 1025 | 58.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10702-PA | 571 | GK10702-PA | 6..453 | 12..451 | 1061 | 56 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23937-PA | 580 | GE23937-PA | 1..446 | 2..451 | 1838 | 90 | Plus |