Clone LD42756 Report

Search the DGRC for LD42756

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:427
Well:56
Vector:pOT2
Associated Gene/TranscriptCG15312-RA
Protein status:LD42756.pep: gold
Preliminary Size:2024
Sequenced Size:1822

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15312 2001-01-01 Release 2 assignment
CG15312 2001-09-19 Blastp of sequenced clone
CG15312 2003-01-01 Sim4 clustering to Release 3
CG15312 2008-04-29 Release 5.5 accounting
CG15312 2008-08-15 Release 5.9 accounting
CG15312 2008-12-18 5.12 accounting

Clone Sequence Records

LD42756.complete Sequence

1822 bp (1822 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058704

> LD42756.complete
CGCAACGGTACATGAGTGGCGGTTGGCGAGCGAACCCAGTGTCCCGTTAT
CAACAACAACTCTCCAAACACCGAACTGCAGTTGAATTAAGCCACCAAAT
ACTTCGTGTTTTTTTTTTCAAGTTCCATAGATGTAGTACAGTACGACAGT
TACTCAATTACTCAATTGCAACTTCCAAAGAATTCGCGTAGTGCGAAAAT
CGCCAAAAATCAGCAGCCGCACTTTGAAGTTACGTCAAAAGGAGTCGTGA
AAGAGGAAGAACGAGAGTGAGGGAGAGAGAGAGAGGTAGCAAGAGAGCCG
TAAGAAAATAACAACAAGGCAGAAGCACGCGATAGGAGTAACTGTAAATC
CGGCTTTGGTCAAAAGGGAGGGGGTGATAAAGCTAGCAGGAAGAGCAGCC
AAAGGAGGCTTATGTAAAGCGTGCTTCGAGCGTGCTATGGAAGCATGTCG
TCCACTTCCAGCTCCGTGCTAACGTTGTCATCGTTTAATCTATTATTTTT
CACCCAAGTGCTCACGGTACTCAGCTCGACGATCAAGTACAACGAATACG
CGACGGACAAGGGCGGCAATGTGAGCATACCGTGCATAGCCCAGGGAAAC
ATAATGTGGGTGAAAGAGCACGGCAACAACAGCACGATAGTTCAGACTGG
TCGTGTTCTCGTCCTGCGAAATGTGAGCACCACGGATGCGGGAATCTACG
TATGCTTTGCGTCAGTGCCACGCCCATCGACAACAGCAACATCAGCAACT
ACCTCACCGCAAAATCTGCAGGATAAAGAAACGCGGCCACTGGAGGATGA
GGATGATGGCCAAGGGGAAAGCGTATCCCCCAAGGATGACCAGCTGAAGG
AAGCCGAAATGGAGGAGGAAGTGGAGTATCTAGCCCACCAGCGAACCAAG
CTCATCGTTCGCACTGTTCCGGGTCCAGTGTCGCAGCTATACTTCAAGGC
ATCCACAATACTGGGTTTCCTCATCTGGCGCTTCAATAAGACTCAATCCG
GTGGCTATCCGGTGCGCAGCTTTACGGCGGAGTACCGCAACGTCTCCTAC
AAGACGCCGCCGGCGAATGCCAGTTTCGAGCACGCCTGGAGCAGGATGGA
TCCGATCAACATAGCCTTTAATGTGCGCCAAATGGAGGTCTATCGCCTGG
CACCCAACACCACCTATGAGTTTCGGATATGGGCCAACAATGAACTGGGC
AGCGGCGAGGTGGTCACCACCAATGTGACCACGCTGCCGGAGACAAAGGA
GGAGGCGAGTCGGACGGCGGACCAGAGCCTGGTGGCCAAGGTCATGGGGG
CAGTGCTGGCGATCAGGATGCTGGGGAGGATGACGATGACGATGTGGCCA
TGCCATTTCCGCGCACCATCATCTTTGGCCAGCACCATCGAACGCCTCCG
CCGCCGCGTTTGCATTTGCCACCGCAGCACCACCGCCATCAAAACCAGAG
CCACCACCATCAGTATCATCATCAGCAGAACCAGCAGCAGCACCACCACC
ACCACCTACGGCGGCAGGACGACGATGATGACGACGACTACGAGGAGGAG
CACGAACCCACCATGGAGCGGTTCAAGCGTAAAGTCTCCGTCTTCTTCAC
CGGACCCACCATCAAGCGTATTTGAGACGTATTTGAGTACAAACACTGGT
CACCAAGGTTGTTGCATTGCTGCTTGATTGGATAGTTAGGATCCACCTCT
ACATCATATACATAGATATAGAAATGAGAGAGAGCTTATCGATCGATCGA
ATGTTTCGTTTTCATTTCGGTTTCCTGTCCAAGCTTCAACTATGAAATAC
CAAAAAAAAAAAAAAAAAAAAA

LD42756.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG15312.c 2499 CG15312.c 99..1920 1..1822 9110 100 Plus
CG15312-RA 2008 CG15312-RA 99..1920 1..1822 9110 100 Plus
CG15312-RC 2217 CG15312-RC 591..2063 350..1822 7365 100 Plus
CG15312-RC 2217 CG15312-RC 46..394 1..349 1745 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9948744..9949290 1801..1255 2735 100 Minus
chrX 22417052 chrX 9952292..9952773 1125..644 2410 100 Minus
chrX 22417052 chrX 9962134..9962482 349..1 1745 100 Minus
chrX 22417052 chrX 9961779..9961937 508..350 795 100 Minus
chrX 22417052 chrX 9952837..9952975 645..507 695 100 Minus
chrX 22417052 chrX 9952073..9952203 1255..1125 655 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10057099..10057666 1822..1255 2840 100 Minus
X 23542271 X 10060667..10061148 1125..644 2410 100 Minus
X 23542271 X 10070497..10070845 349..1 1745 100 Minus
X 23542271 X 10070142..10070300 508..350 795 100 Minus
X 23542271 X 10061212..10061350 645..507 695 100 Minus
X 23542271 X 10060448..10060578 1255..1125 655 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10065197..10065764 1822..1255 2840 100 Minus
X 23527363 X 10068765..10069246 1125..644 2410 100 Minus
X 23527363 X 10078595..10078943 349..1 1745 100 Minus
X 23527363 X 10078240..10078398 508..350 795 100 Minus
X 23527363 X 10069310..10069448 645..507 695 100 Minus
X 23527363 X 10068546..10068676 1255..1125 655 100 Minus
Blast to na_te.dros performed 2019-03-16 12:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6878..6927 725..773 121 74 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2373..2426 725..780 113 69.6 Plus
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 575..622 1516..1559 113 77.1 Plus

LD42756.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:01:09 Download gff for LD42756.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9948744..9949038 1507..1801 100 == Minus
chrX 9949118..9949289 1256..1427 100 <- Minus
chrX 9952073..9952202 1126..1255 100 <- Minus
chrX 9952292..9952771 646..1125 100 <- Minus
chrX 9952837..9952973 509..645 100 <- Minus
chrX 9961779..9961937 350..508 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:48:39 Download gff for LD42756.complete
Subject Subject Range Query Range Percent Splice Strand
CG15312-RA 1..1233 445..1677 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:59:17 Download gff for LD42756.complete
Subject Subject Range Query Range Percent Splice Strand
CG15312-RA 1..1233 445..1677 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:45:20 Download gff for LD42756.complete
Subject Subject Range Query Range Percent Splice Strand
CG15312-RC 1..1233 445..1677 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:29:39 Download gff for LD42756.complete
Subject Subject Range Query Range Percent Splice Strand
CG15312-RA 1..1233 445..1677 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:59 Download gff for LD42756.complete
Subject Subject Range Query Range Percent Splice Strand
CG15312-RC 1..1233 445..1677 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:48:39 Download gff for LD42756.complete
Subject Subject Range Query Range Percent Splice Strand
CG15312-RA 22..1822 1..1801 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:59:17 Download gff for LD42756.complete
Subject Subject Range Query Range Percent Splice Strand
CG15312-RA 22..1822 1..1801 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:45:20 Download gff for LD42756.complete
Subject Subject Range Query Range Percent Splice Strand
CG15312-RA 24..1824 1..1801 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:29:39 Download gff for LD42756.complete
Subject Subject Range Query Range Percent Splice Strand
CG15312-RA 22..1822 1..1801 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:59 Download gff for LD42756.complete
Subject Subject Range Query Range Percent Splice Strand
CG15312-RA 24..1824 1..1801 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:01:09 Download gff for LD42756.complete
Subject Subject Range Query Range Percent Splice Strand
X 10057120..10057665 1256..1801 100 <- Minus
X 10060448..10060577 1126..1255 100 <- Minus
X 10060667..10061146 646..1125 100 <- Minus
X 10061212..10061348 509..645 100 <- Minus
X 10070142..10070300 350..508 100 <- Minus
X 10070497..10070845 1..349 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:01:09 Download gff for LD42756.complete
Subject Subject Range Query Range Percent Splice Strand
X 10057120..10057665 1256..1801 100 <- Minus
X 10060448..10060577 1126..1255 100 <- Minus
X 10060667..10061146 646..1125 100 <- Minus
X 10061212..10061348 509..645 100 <- Minus
X 10070142..10070300 350..508 100 <- Minus
X 10070497..10070845 1..349 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:01:09 Download gff for LD42756.complete
Subject Subject Range Query Range Percent Splice Strand
X 10057120..10057665 1256..1801 100 <- Minus
X 10060448..10060577 1126..1255 100 <- Minus
X 10060667..10061146 646..1125 100 <- Minus
X 10061212..10061348 509..645 100 <- Minus
X 10070142..10070300 350..508 100 <- Minus
X 10070497..10070845 1..349 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:45:20 Download gff for LD42756.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9951153..9951698 1256..1801 100 <- Minus
arm_X 9954481..9954610 1126..1255 100 <- Minus
arm_X 9954700..9955179 646..1125 100 <- Minus
arm_X 9955245..9955381 509..645 100 <- Minus
arm_X 9964175..9964333 350..508 100 <- Minus
arm_X 9964530..9964878 1..349 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:06:00 Download gff for LD42756.complete
Subject Subject Range Query Range Percent Splice Strand
X 10065218..10065763 1256..1801 100 <- Minus
X 10068546..10068675 1126..1255 100 <- Minus
X 10068765..10069244 646..1125 100 <- Minus
X 10069310..10069446 509..645 100 <- Minus
X 10078240..10078398 350..508 100 <- Minus
X 10078595..10078943 1..349 100   Minus

LD42756.pep Sequence

Translation from 444 to 1676

> LD42756.pep
MSSTSSSVLTLSSFNLLFFTQVLTVLSSTIKYNEYATDKGGNVSIPCIAQ
GNIMWVKEHGNNSTIVQTGRVLVLRNVSTTDAGIYVCFASVPRPSTTATS
ATTSPQNLQDKETRPLEDEDDGQGESVSPKDDQLKEAEMEEEVEYLAHQR
TKLIVRTVPGPVSQLYFKASTILGFLIWRFNKTQSGGYPVRSFTAEYRNV
SYKTPPANASFEHAWSRMDPINIAFNVRQMEVYRLAPNTTYEFRIWANNE
LGSGEVVTTNVTTLPETKEEASRTADQSLVAKVMGAVLAIRMLGRMTMTM
WPCHFRAPSSLASTIERLRRRVCICHRSTTAIKTRATTISIIISRTSSST
TTTTYGGRTTMMTTTTRRSTNPPWSGSSVKSPSSSPDPPSSVFETYLSTN
TGHQGCCIAA*

LD42756.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19154-PA 413 GF19154-PA 1..268 1..270 1135 80.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18947-PA 413 GG18947-PA 14..272 14..270 1243 93.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12527-PA 359 GH12527-PA 1..275 1..270 1007 74.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG15312-PF 410 CG15312-PF 1..410 1..410 2114 100 Plus
CG15312-PA 410 CG15312-PA 1..410 1..410 2114 100 Plus
CG15312-PC 410 CG15312-PC 1..410 1..410 2114 100 Plus
CG15312-PB 410 CG15312-PB 1..410 1..410 2114 100 Plus
CG15312-PE 414 CG15312-PE 1..270 1..270 1394 100 Plus
CG15312-PD 464 CG15312-PD 1..270 1..270 1394 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11180-PA 305 GI11180-PA 1..285 1..273 986 73.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16590-PA 334 GL16590-PA 14..281 14..270 918 74.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13639-PA 404 GA13639-PA 14..283 14..270 934 73.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11338-PA 410 GM11338-PA 1..410 1..410 2085 96.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16042-PA 414 GD16042-PA 1..270 1..270 1418 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19545-PA 301 GJ19545-PA 1..273 1..274 1061 76.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25109-PA 329 GK25109-PA 1..321 1..304 1016 67.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15419-PA 403 GE15419-PA 14..403 14..410 1585 86.3 Plus

LD42756.hyp Sequence

Translation from 444 to 1676

> LD42756.hyp
MSSTSSSVLTLSSFNLLFFTQVLTVLSSTIKYNEYATDKGGNVSIPCIAQ
GNIMWVKEHGNNSTIVQTGRVLVLRNVSTTDAGIYVCFASVPRPSTTATS
ATTSPQNLQDKETRPLEDEDDGQGESVSPKDDQLKEAEMEEEVEYLAHQR
TKLIVRTVPGPVSQLYFKASTILGFLIWRFNKTQSGGYPVRSFTAEYRNV
SYKTPPANASFEHAWSRMDPINIAFNVRQMEVYRLAPNTTYEFRIWANNE
LGSGEVVTTNVTTLPETKEEASRTADQSLVAKVMGAVLAIRMLGRMTMTM
WPCHFRAPSSLASTIERLRRRVCICHRSTTAIKTRATTISIIISRTSSST
TTTTYGGRTTMMTTTTRRSTNPPWSGSSVKSPSSSPDPPSSVFETYLSTN
TGHQGCCIAA*

LD42756.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15312-PF 410 CG15312-PF 1..410 1..410 2114 100 Plus
CG15312-PA 410 CG15312-PA 1..410 1..410 2114 100 Plus
CG15312-PC 410 CG15312-PC 1..410 1..410 2114 100 Plus
CG15312-PB 410 CG15312-PB 1..410 1..410 2114 100 Plus
CG15312-PE 414 CG15312-PE 1..270 1..270 1394 100 Plus