Clone LD42868 Report

Search the DGRC for LD42868

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:428
Well:68
Vector:pOT2
Associated Gene/TranscriptCG4041-RB
Protein status:LD42868.pep: gold
Sequenced Size:2680

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4041 2008-04-29 Release 5.5 accounting
CG4041 2008-04-29 Picked prior to 5.5
CG4041 2008-08-15 Release 5.9 accounting
CG4041 2008-12-18 5.12 accounting

Clone Sequence Records

LD42868.complete Sequence

2680 bp assembled on 2007-11-15

GenBank Submission: BT031268

> LD42868.complete
CTGATGCTGGCGTGAAGTCCAAGGAAATCGCTGTGATTTGCAAATCGCAT
CGAGATCATGGGCACGCGGGAGCGCGAAAGGGAGTGCCGCCTGTGCGCGG
TCACCTTCTTCGCGAAACTGCATCCCGGCGACGTGTGCGGCAGCAACGGC
CTGCCCCTAACGCCCAACTCGATTGCGATCCTGGGGCGTGCCCAGAAACT
GAAGGAGCTGCAGGACGAGCACCTGTGCCAGTACCTGGATGTGATCCGCG
GCAAACACGAGCGCACCATTGTGGTTTCGGAGTATCTGGGACTCTCACTG
GAGGACTACGCCATGCGTCATCCACCGCTGGCCATTGCCCAGATACTGAG
AATCTTCTACCAGGTGGCGTGCGGCATCAATGTGCTGAGTCGACACCATC
TGGTGGCCCACAACGTGGAGCCCAAGCACATTCTACTCTCCAGCGATGGG
CAGCGGGTGAAGCTCTTCAACTACGGGCTGCATCACATGACCAAGGGCGG
TGCCTATGTGCCCTTTCCCATTGGCAACATTCGCTACATGGCACCCGAAC
GACTGCTCGGTCTGAATGGCAATGTGAAGAGCGACGTTTGGTCGCTGGCC
CTGGTAATGGTGGAGCTAATATTGCAGATCGAGCTGTGGCCGAAGCTCAA
GCTCTCGAATGTGGTTAGAAAGATCCTGGCCTTTGGCAAGAGCAACGGGG
CGTTGGAGAAGATTGCGCGAGAGCACCAGTGTCACGAGCGCTATGTGCAG
ATGGATCAGCGCCTGCGACAGCTGCTGGAGAGCTGTTTAAGTGTACTGCC
CAAGAGGAGACCACTGCCAGGTGAGCTCTTGGAACATCCCATTTTCGAGG
AAGTCCTATTGGATTTGAAGAAACAGAAGATGCAGCCACTGAGCCCAGAA
ACCGAACATTTACCGCTGCTGCTGCGATGTCCCTTGTCGCAGATCTACCA
CCTGTGGCAACTGGCCGGCGGAGATGTGCAGGCGGAGCTGAAAAAGGAGG
GCCTCATCCGGAGTGAGGCACCCATTTTGGGTCTGCCACAAATCGTTCGC
CTGAGCGGCGCCAGCGTTTGTCCCGGCCGAAGCCAGGCGCAGCTGATGGA
CGATCGCGTGGTGCCGCTGCGCCTGAAGGCGCTGCTCCAGCGACTGAGTG
GCCTGCCGGCCGCAGTCTACTTTCCCCTGCTCCACTCGCCGCGTTTTCCC
GCCCACTTTGCCCGCGAATTGCAGGAACTGCCGCTGGTGATCCGCGAAAA
GGACATCGAGTATCAGTTTCAGCGCGTGCGACTTTTTGCGCGCCTGCTCC
AGGGCTATCCGCATACGGCGGAGCAGCTGCAGCGCGAGGCAGCCGTGGAT
GTGCCGCCGCTACTGAGGGGTCCCATTTGGGCCGCCCTGCTGGAGGTTGT
GCCCAATGGCAGTTACGCGAAGATCGACAAGTTTACGTCTACGAGCACGG
ATCGGCAGATCGAGGTGGATATACCGCGCTGCCATCAGTACGATGAGCTG
CTCTCCTCGCCGGATGGCCACCGCAAGCTGAGGCGGCTGCTCAAGGCCTG
GGTCACCGCCCATCCGCAGTACGTCTACTGGCAGGGACTGGACTCACTGA
CGGCACCGTTTCTCTATCTCAACTTTAACAATGAAGAGTTGGCCTTCCTC
AGCTTGTTCAAGTTCATTCCAAAGTATCTGCAATGGTTCTTTCTCAAGGA
TAATTCGGCGGTGATCAAGGAGTACCTGAGCAAGTTCTCCCAGCTGACTG
CCTTCCATGAGCCGCTTCTCGCTCAGCATTTGGCCAGCATTAGCTTTATA
CCCGAGTTGTTTGCCATCCCGTGGTTCCTAACCATGTTCTCGCATGTATT
CCCGCTGCACAAGATCCTGCATTTGTGGGATAAACTCATGCTGGGCGATA
GTTCGTATCCGCTGTTCATTGGCATCGCCATATTGCGCCAGCTGAGAAGC
ACGCTGCTCACCTCCGGTTTCAACGAGTGCATCCTGCTCTTCTCCGACCT
GCCCGATATCGTGATGGATGGCTGTGTGCTGGAGTCACAGAAGATGTACG
AAGCCACACCGAAGAGTATTACTCATCGCCAGCACGCGTTGCGCCTCCAG
CCGCCACAGGCGTTGGACATTGGCGTGGCGGATGTCGAGCTGAAGCACCT
GCAACAGGAGCAGTGCCCCCGGATCAGCGCCAAGGATGTGCAATTCCTGT
TGGACAATTCGCCAGCGGAGCTGGCCCTCATCGATTTGCGCAGTGTAGTC
GAGTTCGGACGCGTCCATGTGCCGCATAGCATCAACATACCGTTCGCCAC
CGTCCAGTTGGGTGAACAGCGATTGGAGGCCCTGCAGGTGCCCCAATTGG
AGGCGCAGCTCCGCGGCAAGATCGTCGTCTGCGTGAGCAATATCCATCAG
CACTCCGTGGAGTTCTCGCACTTTCTGGTGGCCTGCGGTGTCCAGCGCAC
CTGTATCCTTCACAAAGGATTCAACGTCCTGCACTCCATCGAGCCAAATA
TACTCATCTCGAATTGAGCTCCCGACTTGCTGATCCTTTCTTGTTGGCCT
CATCGCTTCTGCTCGTCTACGCTAAGCTCAATGTACATTTATTATCTATC
TTTTTTAAACGGATTGCATTTGCAAATAAACTATATATACATATATGTAT
TATATAAAAAAAAAAAAAAAAAAAAAAAAA

LD42868.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4041-RB 2960 CG4041-RB 195..2853 1..2659 13295 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 4809281..4810658 1636..259 6875 99.9 Minus
chrX 22417052 chrX 4808322..4808619 2412..2115 1490 100 Minus
chrX 22417052 chrX 4808678..4808950 2116..1844 1365 100 Minus
chrX 22417052 chrX 4810855..4811113 259..1 1280 99.6 Minus
chrX 22417052 chrX 4808016..4808260 2655..2411 1195 99.2 Minus
chrX 22417052 chrX 4809021..4809229 1843..1635 1030 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4916545..4917922 1636..259 6890 100 Minus
X 23542271 X 4915586..4915883 2412..2115 1490 100 Minus
X 23542271 X 4915942..4916214 2116..1844 1365 100 Minus
X 23542271 X 4918121..4918379 259..1 1295 100 Minus
X 23542271 X 4915276..4915524 2659..2411 1245 100 Minus
X 23542271 X 4916285..4916493 1843..1635 1045 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 4924643..4926020 1636..259 6890 100 Minus
X 23527363 X 4923684..4923981 2412..2115 1490 100 Minus
X 23527363 X 4924040..4924312 2116..1844 1365 100 Minus
X 23527363 X 4926219..4926477 259..1 1295 100 Minus
X 23527363 X 4923374..4923622 2659..2411 1245 100 Minus
X 23527363 X 4924383..4924591 1843..1635 1045 100 Minus
Blast to na_te.dros performed on 2019-03-15 18:56:59 has no hits.

LD42868.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:58:12 Download gff for LD42868.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 4808016..4808258 2413..2655 99 <- Minus
chrX 4808322..4808618 2116..2412 100 <- Minus
chrX 4808679..4808950 1844..2115 100 <- Minus
chrX 4809021..4809227 1637..1843 99 <- Minus
chrX 4809281..4810657 260..1636 99 <- Minus
chrX 4810855..4811113 1..259 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:25:25 Download gff for LD42868.complete
Subject Subject Range Query Range Percent Splice Strand
CG4041-RA 1..2355 58..2412 100 -> Plus
CG4041-RA 2419..2523 2413..2517 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:05:00 Download gff for LD42868.complete
Subject Subject Range Query Range Percent Splice Strand
CG4041-RB 1..2460 58..2517 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:37:04 Download gff for LD42868.complete
Subject Subject Range Query Range Percent Splice Strand
CG4041-RB 1..2460 58..2517 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:51:20 Download gff for LD42868.complete
Subject Subject Range Query Range Percent Splice Strand
CG4041-RA 1..2355 58..2412 100 -> Plus
CG4041-RA 2419..2523 2413..2517 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:41 Download gff for LD42868.complete
Subject Subject Range Query Range Percent Splice Strand
CG4041-RB 1..2460 58..2517 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:57:34 Download gff for LD42868.complete
Subject Subject Range Query Range Percent Splice Strand
CG4041-RA 67..2478 1..2412 100 -> Plus
CG4041-RA 2542..2646 2413..2517 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:05:00 Download gff for LD42868.complete
Subject Subject Range Query Range Percent Splice Strand
CG4041-RB 67..2721 1..2655 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:37:04 Download gff for LD42868.complete
Subject Subject Range Query Range Percent Splice Strand
CG4041-RB 69..2723 1..2655 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:51:20 Download gff for LD42868.complete
Subject Subject Range Query Range Percent Splice Strand
CG4041-RA 2542..2646 2413..2517 100   Plus
CG4041-RA 67..2478 1..2412 100 -> Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:41 Download gff for LD42868.complete
Subject Subject Range Query Range Percent Splice Strand
CG4041-RB 69..2723 1..2655 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:58:12 Download gff for LD42868.complete
Subject Subject Range Query Range Percent Splice Strand
X 4915280..4915522 2413..2655 100 <- Minus
X 4915586..4915882 2116..2412 100 <- Minus
X 4915943..4916214 1844..2115 100 <- Minus
X 4916285..4916491 1637..1843 100 <- Minus
X 4916545..4917921 260..1636 100 <- Minus
X 4918121..4918379 1..259 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:58:12 Download gff for LD42868.complete
Subject Subject Range Query Range Percent Splice Strand
X 4915280..4915522 2413..2655 100 <- Minus
X 4915586..4915882 2116..2412 100 <- Minus
X 4915943..4916214 1844..2115 100 <- Minus
X 4916285..4916491 1637..1843 100 <- Minus
X 4916545..4917921 260..1636 100 <- Minus
X 4918121..4918379 1..259 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:58:12 Download gff for LD42868.complete
Subject Subject Range Query Range Percent Splice Strand
X 4915280..4915522 2413..2655 100 <- Minus
X 4915586..4915882 2116..2412 100 <- Minus
X 4915943..4916214 1844..2115 100 <- Minus
X 4916285..4916491 1637..1843 100 <- Minus
X 4916545..4917921 260..1636 100 <- Minus
X 4918121..4918379 1..259 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:37:04 Download gff for LD42868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4809619..4809915 2116..2412 100 <- Minus
arm_X 4809976..4810247 1844..2115 100 <- Minus
arm_X 4810318..4810524 1637..1843 100 <- Minus
arm_X 4809313..4809555 2413..2655 100 <- Minus
arm_X 4810578..4811954 260..1636 100 <- Minus
arm_X 4812154..4812412 1..259 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:57:08 Download gff for LD42868.complete
Subject Subject Range Query Range Percent Splice Strand
X 4923378..4923620 2413..2655 100 <- Minus
X 4923684..4923980 2116..2412 100 <- Minus
X 4924041..4924312 1844..2115 100 <- Minus
X 4924383..4924589 1637..1843 100 <- Minus
X 4924643..4926019 260..1636 100 <- Minus
X 4926219..4926477 1..259 100   Minus

LD42868.pep Sequence

Translation from 57 to 2516

> LD42868.pep
MGTRERERECRLCAVTFFAKLHPGDVCGSNGLPLTPNSIAILGRAQKLKE
LQDEHLCQYLDVIRGKHERTIVVSEYLGLSLEDYAMRHPPLAIAQILRIF
YQVACGINVLSRHHLVAHNVEPKHILLSSDGQRVKLFNYGLHHMTKGGAY
VPFPIGNIRYMAPERLLGLNGNVKSDVWSLALVMVELILQIELWPKLKLS
NVVRKILAFGKSNGALEKIAREHQCHERYVQMDQRLRQLLESCLSVLPKR
RPLPGELLEHPIFEEVLLDLKKQKMQPLSPETEHLPLLLRCPLSQIYHLW
QLAGGDVQAELKKEGLIRSEAPILGLPQIVRLSGASVCPGRSQAQLMDDR
VVPLRLKALLQRLSGLPAAVYFPLLHSPRFPAHFARELQELPLVIREKDI
EYQFQRVRLFARLLQGYPHTAEQLQREAAVDVPPLLRGPIWAALLEVVPN
GSYAKIDKFTSTSTDRQIEVDIPRCHQYDELLSSPDGHRKLRRLLKAWVT
AHPQYVYWQGLDSLTAPFLYLNFNNEELAFLSLFKFIPKYLQWFFLKDNS
AVIKEYLSKFSQLTAFHEPLLAQHLASISFIPELFAIPWFLTMFSHVFPL
HKILHLWDKLMLGDSSYPLFIGIAILRQLRSTLLTSGFNECILLFSDLPD
IVMDGCVLESQKMYEATPKSITHRQHALRLQPPQALDIGVADVELKHLQQ
EQCPRISAKDVQFLLDNSPAELALIDLRSVVEFGRVHVPHSINIPFATVQ
LGEQRLEALQVPQLEAQLRGKIVVCVSNIHQHSVEFSHFLVACGVQRTCI
LHKGFNVLHSIEPNILISN*

LD42868.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20338-PA 816 GF20338-PA 4..816 7..819 3774 88.6 Plus
Dana\GF21013-PA 581 GF21013-PA 66..238 38..206 157 25.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18512-PA 819 GG18512-PA 1..819 1..819 4268 98.5 Plus
Dere\GG12850-PA 582 GG12850-PA 66..238 38..206 157 25.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12593-PA 841 GH12593-PA 5..841 2..819 3358 77.4 Plus
Dgri\GH12117-PA 589 GH12117-PA 78..238 46..206 158 26.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4041-PB 819 CG4041-PB 1..819 1..819 4258 100 Plus
AMPKalpha-PC 582 CG3051-PC 78..220 46..188 165 27.8 Plus
AMPKalpha-PB 582 CG3051-PB 78..220 46..188 165 27.8 Plus
AMPKalpha-PA 582 CG3051-PA 78..220 46..188 165 27.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16222-PA 832 GI16222-PA 15..832 11..819 3330 78.2 Plus
Dmoj\GI16329-PA 589 GI16329-PA 84..244 46..206 158 26.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14810-PA 825 GL14810-PA 6..825 9..819 3560 83.7 Plus
Dper\GL14247-PA 581 GL14247-PA 78..238 46..206 157 26.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17907-PA 825 GA17907-PA 6..825 9..819 3568 83.7 Plus
Dpse\GA15892-PA 587 GA15892-PA 78..238 46..206 158 26.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12660-PA 819 GM12660-PA 1..819 1..819 4302 99.3 Plus
Dsec\GM19132-PA 565 GM19132-PA 78..238 46..206 156 26.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16270-PA 819 GD16270-PA 1..819 1..819 4288 99.3 Plus
Dsim\GD16554-PA 582 GD16554-PA 66..238 38..206 157 25.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15914-PA 834 GJ15914-PA 13..834 12..819 3265 77.6 Plus
Dvir\GJ15670-PA 568 GJ15670-PA 55..213 38..206 156 27.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25626-PA 801 GK25626-PA 5..800 6..798 3400 79.8 Plus
Dwil\GK16296-PA 592 GK16296-PA 81..241 46..206 156 26.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16829-PA 819 GE16829-PA 1..819 1..819 4241 98 Plus
Dyak\GE16684-PA 582 GE16684-PA 66..238 38..206 157 25.9 Plus

LD42868.hyp Sequence

Translation from 57 to 2516

> LD42868.hyp
MGTRERERECRLCAVTFFAKLHPGDVCGSNGLPLTPNSIAILGRAQKLKE
LQDEHLCQYLDVIRGKHERTIVVSEYLGLSLEDYAMRHPPLAIAQILRIF
YQVACGINVLSRHHLVAHNVEPKHILLSSDGQRVKLFNYGLHHMTKGGAY
VPFPIGNIRYMAPERLLGLNGNVKSDVWSLALVMVELILQIELWPKLKLS
NVVRKILAFGKSNGALEKIAREHQCHERYVQMDQRLRQLLESCLSVLPKR
RPLPGELLEHPIFEEVLLDLKKQKMQPLSPETEHLPLLLRCPLSQIYHLW
QLAGGDVQAELKKEGLIRSEAPILGLPQIVRLSGASVCPGRSQAQLMDDR
VVPLRLKALLQRLSGLPAAVYFPLLHSPRFPAHFARELQELPLVIREKDI
EYQFQRVRLFARLLQGYPHTAEQLQREAAVDVPPLLRGPIWAALLEVVPN
GSYAKIDKFTSTSTDRQIEVDIPRCHQYDELLSSPDGHRKLRRLLKAWVT
AHPQYVYWQGLDSLTAPFLYLNFNNEELAFLSLFKFIPKYLQWFFLKDNS
AVIKEYLSKFSQLTAFHEPLLAQHLASISFIPELFAIPWFLTMFSHVFPL
HKILHLWDKLMLGDSSYPLFIGIAILRQLRSTLLTSGFNECILLFSDLPD
IVMDGCVLESQKMYEATPKSITHRQHALRLQPPQALDIGVADVELKHLQQ
EQCPRISAKDVQFLLDNSPAELALIDLRSVVEFGRVHVPHSINIPFATVQ
LGEQRLEALQVPQLEAQLRGKIVVCVSNIHQHSVEFSHFLVACGVQRTCI
LHKGFNVLHSIEPNILISN*

LD42868.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4041-PB 819 CG4041-PB 1..819 1..819 4258 100 Plus
AMPKalpha-PC 582 CG3051-PC 78..220 46..188 165 27.8 Plus
AMPKalpha-PB 582 CG3051-PB 78..220 46..188 165 27.8 Plus
AMPKalpha-PA 582 CG3051-PA 78..220 46..188 165 27.8 Plus