BDGP Sequence Production Resources |
Search the DGRC for LD43003
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 430 |
Well: | 3 |
Vector: | pOT2 |
Associated Gene/Transcript | HP5-RA |
Protein status: | LD43003.pep: gold |
Preliminary Size: | 1891 |
Sequenced Size: | 1752 |
Gene | Date | Evidence |
---|---|---|
CG1745 | 2001-01-01 | Release 2 assignment |
CG1745 | 2001-07-04 | Blastp of sequenced clone |
CG1745 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1745 | 2008-04-29 | Release 5.5 accounting |
CG1745 | 2008-08-15 | Release 5.9 accounting |
CG1745 | 2008-12-18 | 5.12 accounting |
1752 bp (1752 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051963
> LD43003.complete GCACACCAGCTAGATGGCGTCTTTAGGAGTGTGTAAAATTAATCAGGAAA GTTACCTGAATGCAAACGCGATTTTAAAAGTCGCATCTGCTGATTAAGTG GGCAAATCGAGTGCTCCTCGCGCCACAATTAGTCCGTGGTACAGTGGCCT CACTAATTGCGCAAAACACACATCTGTAAGCGCATATTAACCGTATATTT TAAAGCGGTAAATCTGCGCTCTTTGCTAATTTTCATTTTCGTGGGAAAAT CGCAAAGGGCTGAAACCTGCGATAATGGATATTTTTGATATGGTCAAAGC GGCGCCGCCGCCGCAAACTATTAATCCGGTGGACACCAAGCTCTCCACTC CGTCGCCCATACCGCCCGATTCGCCAATCGACGTAAATGACCTCCTGGAG AGTGGAAACCAATTGGACGAGAATGACTTGCGCATGTCGAGAAAATCAAA GAATGTCGAACAGTGCAGCATTGATCTGTTTGATTCGGAAACATCATTCG ACCATCTCGACGAGTCATTGGCCAAGAGGAAGCGTAAGAGCGTGGCTAAC TCAAAACCAAACAAAAGCAGGAAATCCACTGTCTCTGCATCGACGCCGCA CAACAAGAGGCCAAAAGTGTCCATTGACGACGACGGCGAGGCCATCGAGG AGGACCAGCAATCGATGGTGGTCGTTCCCACCAAGACGAAGGCTCAGCAA AAGATGTTCAGCGATCAGCAGTCGCCGAATGTTAAAAGAAAGGTGCGGGT GCTATTACGTCGCCTGAAACAGACAGAAATCGATTCGGCCGTCGAATCTT TGGCCAATTCATCATTTATCAATGTGCCCGAGATCGTTAACCAGAGCGGT ACTAGTGGCCGTAGCAGGCACAAAAAGAGAAAAACGTCACCTAAGAAACA AAAGTCATCAACAGCGCAGACCAATTTCCACATCAAAGTTCCTTTGCAGA ATGGCGCCAAAAAGCGTGCTCTGAACCACTCGTTGCGCGCTCATACACCG CCGCCCAGTTTGGCCAAGAGTTCTGAAAGCACACACTCCGCACTGAAGCG AAGTCCCAAGCCCAAGATCAAGGCGAAGAGATTATCCAGTCGCGGACGCA ACACCGATCCGGATTTGGTTAAGCGTTATGGCGCGCATTTCTTTGGCTGT GTGGTGAAGGTGAGGAGGACGCGTTTACCAAGTGCCAAGTGGCCTGACTG CAAACCGCCTCCCATTGGCGACGGAGTTGTCAGGAAGGTGTATCCCAAGA AGGCGGTATCCTTCAGCGAGGCCGTCGAGATTCTGGGCAGCCCCGGGGGT CCATCACGTCGGTCTACTTTCGGTTCGCTTTCATCGAGAGGAGCTCCGAA ACCGACACGACTGCAGCGTGTGGATGCCACTGGCAATGTGCTGGAGGACA TAGCACTGACCTCCACGCCGCTCTTCTCGTCATCTTCTGGAGGCTCGCGC GAGCGGGTTAGGCGCCGCTCATGCAACGGTACGCCTGTGGTCGGAAGGCT CAAGTTACGCAGGTTGGGCCGCCTAAGCATAGACAACAGCTCCTCCAGGT CTGATGGAGGTGGAGATAATGATGATGACGATGAGGAGTATATAGGTAGG AGGATGCACTTATTAAACTGACATCAAACTCGATGTAATCGCATTAATCA TGTCTCATTTTGTATTAAATGATTTCGTTATTTTTATGACAGGATTTGAC CAAATCAAATTAAAGAAGAATTGAGCTAAAACTAAAAAAAAAAAAAAAAA AA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HP5-RA | 2026 | HP5-RA | 35..1769 | 1..1735 | 8675 | 100 | Plus |
HP5.c | 1685 | HP5.c | 22..1617 | 1..1596 | 7980 | 100 | Plus |
HP5.b | 1661 | HP5.b | 188..1661 | 258..1731 | 7370 | 100 | Plus |
HP5.b | 1661 | HP5.b | 13..188 | 1..176 | 880 | 100 | Plus |
HP5.c | 1685 | HP5.c | 1615..1659 | 1691..1735 | 225 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 11345975..11346363 | 1..389 | 100 | -> | Plus |
chrX | 11346454..11347797 | 390..1733 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1745-RA | 1..1347 | 275..1621 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HP5-RA | 1..1347 | 275..1621 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HP5-RA | 1..1347 | 275..1621 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1745-RA | 1..1347 | 275..1621 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HP5-RA | 1..1347 | 275..1621 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1745-RA | 1..1731 | 1..1731 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HP5-RA | 1..1731 | 1..1731 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HP5-RA | 18..1748 | 1..1731 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1745-RA | 1..1731 | 1..1731 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HP5-RA | 18..1744 | 1..1727 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11454803..11455191 | 1..389 | 100 | -> | Plus |
X | 11455282..11456625 | 390..1733 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11454803..11455191 | 1..389 | 100 | -> | Plus |
X | 11455282..11456625 | 390..1733 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11454803..11455191 | 1..389 | 100 | -> | Plus |
X | 11455282..11456625 | 390..1733 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 11348836..11349224 | 1..389 | 100 | -> | Plus |
arm_X | 11349315..11350658 | 390..1733 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11462901..11463289 | 1..389 | 100 | -> | Plus |
X | 11463380..11464723 | 390..1733 | 100 | Plus |
Translation from 274 to 1620
> LD43003.pep MDIFDMVKAAPPPQTINPVDTKLSTPSPIPPDSPIDVNDLLESGNQLDEN DLRMSRKSKNVEQCSIDLFDSETSFDHLDESLAKRKRKSVANSKPNKSRK STVSASTPHNKRPKVSIDDDGEAIEEDQQSMVVVPTKTKAQQKMFSDQQS PNVKRKVRVLLRRLKQTEIDSAVESLANSSFINVPEIVNQSGTSGRSRHK KRKTSPKKQKSSTAQTNFHIKVPLQNGAKKRALNHSLRAHTPPPSLAKSS ESTHSALKRSPKPKIKAKRLSSRGRNTDPDLVKRYGAHFFGCVVKVRRTR LPSAKWPDCKPPPIGDGVVRKVYPKKAVSFSEAVEILGSPGGPSRRSTFG SLSSRGAPKPTRLQRVDATGNVLEDIALTSTPLFSSSSGGSRERVRRRSC NGTPVVGRLKLRRLGRLSIDNSSSRSDGGGDNDDDDEEYIGRRMHLLN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22498-PA | 840 | GF22498-PA | 1..470 | 1..440 | 473 | 38.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18418-PA | 889 | GG18418-PA | 1..483 | 1..440 | 1210 | 60.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12366-PA | 724 | GH12366-PA | 1..396 | 1..422 | 290 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HP5-PA | 448 | CG1745-PA | 1..448 | 1..448 | 2290 | 100 | Plus |
HP5-PC | 450 | CG1745-PC | 1..441 | 1..441 | 2253 | 100 | Plus |
HP5-PB | 837 | CG1745-PB | 1..440 | 1..440 | 2247 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14742-PA | 744 | GI14742-PA | 158..470 | 131..440 | 306 | 32.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19819-PA | 1540 | GL19819-PA | 12..318 | 134..440 | 360 | 36 | Plus |
Dper\GL19819-PA | 1540 | GL19819-PA | 800..1105 | 135..440 | 356 | 36.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14514-PA | 859 | GA14514-PA | 124..431 | 135..440 | 359 | 35.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13081-PA | 840 | GM13081-PA | 1..429 | 1..426 | 1520 | 84.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17023-PA | 642 | GD17023-PA | 1..426 | 1..426 | 1532 | 84.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19150-PA | 716 | GJ19150-PA | 136..427 | 135..444 | 314 | 36.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19943-PA | 906 | GK19943-PA | 136..426 | 135..413 | 355 | 38.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15937-PA | 888 | GE15937-PA | 1..479 | 1..440 | 1299 | 64.3 | Plus |
Translation from 274 to 1620
> LD43003.hyp MDIFDMVKAAPPPQTINPVDTKLSTPSPIPPDSPIDVNDLLESGNQLDEN DLRMSRKSKNVEQCSIDLFDSETSFDHLDESLAKRKRKSVANSKPNKSRK STVSASTPHNKRPKVSIDDDGEAIEEDQQSMVVVPTKTKAQQKMFSDQQS PNVKRKVRVLLRRLKQTEIDSAVESLANSSFINVPEIVNQSGTSGRSRHK KRKTSPKKQKSSTAQTNFHIKVPLQNGAKKRALNHSLRAHTPPPSLAKSS ESTHSALKRSPKPKIKAKRLSSRGRNTDPDLVKRYGAHFFGCVVKVRRTR LPSAKWPDCKPPPIGDGVVRKVYPKKAVSFSEAVEILGSPGGPSRRSTFG SLSSRGAPKPTRLQRVDATGNVLEDIALTSTPLFSSSSGGSRERVRRRSC NGTPVVGRLKLRRLGRLSIDNSSSRSDGGGDNDDDDEEYIGRRMHLLN*