Clone LD43003 Report

Search the DGRC for LD43003

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:430
Well:3
Vector:pOT2
Associated Gene/TranscriptHP5-RA
Protein status:LD43003.pep: gold
Preliminary Size:1891
Sequenced Size:1752

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1745 2001-01-01 Release 2 assignment
CG1745 2001-07-04 Blastp of sequenced clone
CG1745 2003-01-01 Sim4 clustering to Release 3
CG1745 2008-04-29 Release 5.5 accounting
CG1745 2008-08-15 Release 5.9 accounting
CG1745 2008-12-18 5.12 accounting

Clone Sequence Records

LD43003.complete Sequence

1752 bp (1752 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051963

> LD43003.complete
GCACACCAGCTAGATGGCGTCTTTAGGAGTGTGTAAAATTAATCAGGAAA
GTTACCTGAATGCAAACGCGATTTTAAAAGTCGCATCTGCTGATTAAGTG
GGCAAATCGAGTGCTCCTCGCGCCACAATTAGTCCGTGGTACAGTGGCCT
CACTAATTGCGCAAAACACACATCTGTAAGCGCATATTAACCGTATATTT
TAAAGCGGTAAATCTGCGCTCTTTGCTAATTTTCATTTTCGTGGGAAAAT
CGCAAAGGGCTGAAACCTGCGATAATGGATATTTTTGATATGGTCAAAGC
GGCGCCGCCGCCGCAAACTATTAATCCGGTGGACACCAAGCTCTCCACTC
CGTCGCCCATACCGCCCGATTCGCCAATCGACGTAAATGACCTCCTGGAG
AGTGGAAACCAATTGGACGAGAATGACTTGCGCATGTCGAGAAAATCAAA
GAATGTCGAACAGTGCAGCATTGATCTGTTTGATTCGGAAACATCATTCG
ACCATCTCGACGAGTCATTGGCCAAGAGGAAGCGTAAGAGCGTGGCTAAC
TCAAAACCAAACAAAAGCAGGAAATCCACTGTCTCTGCATCGACGCCGCA
CAACAAGAGGCCAAAAGTGTCCATTGACGACGACGGCGAGGCCATCGAGG
AGGACCAGCAATCGATGGTGGTCGTTCCCACCAAGACGAAGGCTCAGCAA
AAGATGTTCAGCGATCAGCAGTCGCCGAATGTTAAAAGAAAGGTGCGGGT
GCTATTACGTCGCCTGAAACAGACAGAAATCGATTCGGCCGTCGAATCTT
TGGCCAATTCATCATTTATCAATGTGCCCGAGATCGTTAACCAGAGCGGT
ACTAGTGGCCGTAGCAGGCACAAAAAGAGAAAAACGTCACCTAAGAAACA
AAAGTCATCAACAGCGCAGACCAATTTCCACATCAAAGTTCCTTTGCAGA
ATGGCGCCAAAAAGCGTGCTCTGAACCACTCGTTGCGCGCTCATACACCG
CCGCCCAGTTTGGCCAAGAGTTCTGAAAGCACACACTCCGCACTGAAGCG
AAGTCCCAAGCCCAAGATCAAGGCGAAGAGATTATCCAGTCGCGGACGCA
ACACCGATCCGGATTTGGTTAAGCGTTATGGCGCGCATTTCTTTGGCTGT
GTGGTGAAGGTGAGGAGGACGCGTTTACCAAGTGCCAAGTGGCCTGACTG
CAAACCGCCTCCCATTGGCGACGGAGTTGTCAGGAAGGTGTATCCCAAGA
AGGCGGTATCCTTCAGCGAGGCCGTCGAGATTCTGGGCAGCCCCGGGGGT
CCATCACGTCGGTCTACTTTCGGTTCGCTTTCATCGAGAGGAGCTCCGAA
ACCGACACGACTGCAGCGTGTGGATGCCACTGGCAATGTGCTGGAGGACA
TAGCACTGACCTCCACGCCGCTCTTCTCGTCATCTTCTGGAGGCTCGCGC
GAGCGGGTTAGGCGCCGCTCATGCAACGGTACGCCTGTGGTCGGAAGGCT
CAAGTTACGCAGGTTGGGCCGCCTAAGCATAGACAACAGCTCCTCCAGGT
CTGATGGAGGTGGAGATAATGATGATGACGATGAGGAGTATATAGGTAGG
AGGATGCACTTATTAAACTGACATCAAACTCGATGTAATCGCATTAATCA
TGTCTCATTTTGTATTAAATGATTTCGTTATTTTTATGACAGGATTTGAC
CAAATCAAATTAAAGAAGAATTGAGCTAAAACTAAAAAAAAAAAAAAAAA
AA

LD43003.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
HP5-RA 2026 HP5-RA 35..1769 1..1735 8675 100 Plus
HP5.c 1685 HP5.c 22..1617 1..1596 7980 100 Plus
HP5.b 1661 HP5.b 188..1661 258..1731 7370 100 Plus
HP5.b 1661 HP5.b 13..188 1..176 880 100 Plus
HP5.c 1685 HP5.c 1615..1659 1691..1735 225 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11346453..11347797 389..1733 6680 99.8 Plus
chrX 22417052 chrX 11345975..11346363 1..389 1945 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11455281..11456627 389..1735 6735 100 Plus
X 23542271 X 11454803..11455191 1..389 1945 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11463379..11464725 389..1735 6735 100 Plus
X 23527363 X 11462901..11463289 1..389 1945 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:04:09 has no hits.

LD43003.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:05:00 Download gff for LD43003.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11345975..11346363 1..389 100 -> Plus
chrX 11346454..11347797 390..1733 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:25:30 Download gff for LD43003.complete
Subject Subject Range Query Range Percent Splice Strand
CG1745-RA 1..1347 275..1621 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:10 Download gff for LD43003.complete
Subject Subject Range Query Range Percent Splice Strand
HP5-RA 1..1347 275..1621 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:49:37 Download gff for LD43003.complete
Subject Subject Range Query Range Percent Splice Strand
HP5-RA 1..1347 275..1621 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:47:36 Download gff for LD43003.complete
Subject Subject Range Query Range Percent Splice Strand
CG1745-RA 1..1347 275..1621 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:05 Download gff for LD43003.complete
Subject Subject Range Query Range Percent Splice Strand
HP5-RA 1..1347 275..1621 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:10:15 Download gff for LD43003.complete
Subject Subject Range Query Range Percent Splice Strand
CG1745-RA 1..1731 1..1731 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:10 Download gff for LD43003.complete
Subject Subject Range Query Range Percent Splice Strand
HP5-RA 1..1731 1..1731 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:49:37 Download gff for LD43003.complete
Subject Subject Range Query Range Percent Splice Strand
HP5-RA 18..1748 1..1731 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:47:36 Download gff for LD43003.complete
Subject Subject Range Query Range Percent Splice Strand
CG1745-RA 1..1731 1..1731 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:05 Download gff for LD43003.complete
Subject Subject Range Query Range Percent Splice Strand
HP5-RA 18..1744 1..1727 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:05:00 Download gff for LD43003.complete
Subject Subject Range Query Range Percent Splice Strand
X 11454803..11455191 1..389 100 -> Plus
X 11455282..11456625 390..1733 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:05:00 Download gff for LD43003.complete
Subject Subject Range Query Range Percent Splice Strand
X 11454803..11455191 1..389 100 -> Plus
X 11455282..11456625 390..1733 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:05:00 Download gff for LD43003.complete
Subject Subject Range Query Range Percent Splice Strand
X 11454803..11455191 1..389 100 -> Plus
X 11455282..11456625 390..1733 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:49:37 Download gff for LD43003.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11348836..11349224 1..389 100 -> Plus
arm_X 11349315..11350658 390..1733 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:25:36 Download gff for LD43003.complete
Subject Subject Range Query Range Percent Splice Strand
X 11462901..11463289 1..389 100 -> Plus
X 11463380..11464723 390..1733 100   Plus

LD43003.pep Sequence

Translation from 274 to 1620

> LD43003.pep
MDIFDMVKAAPPPQTINPVDTKLSTPSPIPPDSPIDVNDLLESGNQLDEN
DLRMSRKSKNVEQCSIDLFDSETSFDHLDESLAKRKRKSVANSKPNKSRK
STVSASTPHNKRPKVSIDDDGEAIEEDQQSMVVVPTKTKAQQKMFSDQQS
PNVKRKVRVLLRRLKQTEIDSAVESLANSSFINVPEIVNQSGTSGRSRHK
KRKTSPKKQKSSTAQTNFHIKVPLQNGAKKRALNHSLRAHTPPPSLAKSS
ESTHSALKRSPKPKIKAKRLSSRGRNTDPDLVKRYGAHFFGCVVKVRRTR
LPSAKWPDCKPPPIGDGVVRKVYPKKAVSFSEAVEILGSPGGPSRRSTFG
SLSSRGAPKPTRLQRVDATGNVLEDIALTSTPLFSSSSGGSRERVRRRSC
NGTPVVGRLKLRRLGRLSIDNSSSRSDGGGDNDDDDEEYIGRRMHLLN*

LD43003.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22498-PA 840 GF22498-PA 1..470 1..440 473 38.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18418-PA 889 GG18418-PA 1..483 1..440 1210 60.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12366-PA 724 GH12366-PA 1..396 1..422 290 29.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
HP5-PA 448 CG1745-PA 1..448 1..448 2290 100 Plus
HP5-PC 450 CG1745-PC 1..441 1..441 2253 100 Plus
HP5-PB 837 CG1745-PB 1..440 1..440 2247 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14742-PA 744 GI14742-PA 158..470 131..440 306 32.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19819-PA 1540 GL19819-PA 12..318 134..440 360 36 Plus
Dper\GL19819-PA 1540 GL19819-PA 800..1105 135..440 356 36.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14514-PA 859 GA14514-PA 124..431 135..440 359 35.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13081-PA 840 GM13081-PA 1..429 1..426 1520 84.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17023-PA 642 GD17023-PA 1..426 1..426 1532 84.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19150-PA 716 GJ19150-PA 136..427 135..444 314 36.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19943-PA 906 GK19943-PA 136..426 135..413 355 38.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15937-PA 888 GE15937-PA 1..479 1..440 1299 64.3 Plus

LD43003.hyp Sequence

Translation from 274 to 1620

> LD43003.hyp
MDIFDMVKAAPPPQTINPVDTKLSTPSPIPPDSPIDVNDLLESGNQLDEN
DLRMSRKSKNVEQCSIDLFDSETSFDHLDESLAKRKRKSVANSKPNKSRK
STVSASTPHNKRPKVSIDDDGEAIEEDQQSMVVVPTKTKAQQKMFSDQQS
PNVKRKVRVLLRRLKQTEIDSAVESLANSSFINVPEIVNQSGTSGRSRHK
KRKTSPKKQKSSTAQTNFHIKVPLQNGAKKRALNHSLRAHTPPPSLAKSS
ESTHSALKRSPKPKIKAKRLSSRGRNTDPDLVKRYGAHFFGCVVKVRRTR
LPSAKWPDCKPPPIGDGVVRKVYPKKAVSFSEAVEILGSPGGPSRRSTFG
SLSSRGAPKPTRLQRVDATGNVLEDIALTSTPLFSSSSGGSRERVRRRSC
NGTPVVGRLKLRRLGRLSIDNSSSRSDGGGDNDDDDEEYIGRRMHLLN*

LD43003.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
HP5-PA 448 CG1745-PA 1..448 1..448 2290 100 Plus
HP5-PC 450 CG1745-PC 1..441 1..441 2253 100 Plus
HP5-PB 837 CG1745-PB 1..440 1..440 2247 100 Plus