Clone LD43023 Report

Search the DGRC for LD43023

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:430
Well:23
Vector:pOT2
Associated Gene/TranscriptCG8321-RA
Protein status:LD43023.pep: gold
Preliminary Size:1359
Sequenced Size:1211

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8321 2001-01-01 Release 2 assignment
CG8321 2003-01-01 Sim4 clustering to Release 3
CG8321 2003-02-22 Blastp of sequenced clone
CG8321 2008-04-29 Release 5.5 accounting
CG8321 2008-08-15 Release 5.9 accounting
CG8321 2008-12-18 5.12 accounting

Clone Sequence Records

LD43023.complete Sequence

1211 bp (1211 high quality bases) assembled on 2003-02-22

GenBank Submission: AY069654

> LD43023.complete
ACTAGTTCCAATTGCATTTTCTGCGTTGTTTTTTTTCGGGGGTGTGACGT
TTTTCTTGTTGTTTTTGTGCTATTGTGAAATAAACCAAACAATTGTCGAG
TTAAATAGACACTGATTGTTGTTTTGCCGCGCAGTTCGAACAACGAAAAC
TAATTCCAAACAAAGCTTACGCCGGCAAAACCACGAAATGCAGGTGGAAC
CAGCCGAAGTCGGCTGTGACGTCACGCATCGCCAGCAGGAGAAAAACAAA
ACCAATGGGATTTTCTCAACGGCAGTCAGAAGTAAAAAAAACGGGCAACC
GAACGGACGGATCTACACCTCCACGCCGAAGACCTCGCATCCGAAACTTG
AGCACTACGTAGGTGTTGCTAAACCCTCGGAAAAGGGGCGAGTGGGAGTG
GTGACCGCCCTCGATCCGCTGATCAAAAAGGTGGCCCTTCTCTTTGGGAC
TCTTATCATTGGCTACAAAAGCGTCATCTTAACGATGCCATACATCACGG
GCGATTCCATCCAGGTGCTGAGCCACCAGGTGCAGAGTAGGTGGAACGAG
ACCTTGGTGTGGGCCACCAGGCACCAGCTGGGCTCCAGGCTGAGTCCCCT
GCTGTGTGGCCTTCTAGTGGCAGCTTTCGCGTACGGAATCGTGTACTTGG
ACAGCGCGGTGCCCGGCGTAAATCCCCCCTCGCCCTTTACGCCGCGTTCC
AAGAAACGTTTCCGCGAGGAGAAGACTGCCTCGATGCACTTGGGCTACTT
GTGCGCCCTGTTCTGCGGATTTCTGGTCACGGTCTTCATGTACTTCGACT
TGTACTCGTAGAACTGAATACCCATTTCCTTCCAATTAGTTCAATAAGTT
CACCAGTATTAGACTTTATACGCCCACTTCGGAATTTGTATTTGTTGTAG
TCCTTGAAACTGTGCAATGCTCCTGGAGAGAATCGTCAGGGGGCATTTTG
AAGCTAACTTATTTCCTAGGTATATTAATTATAAGTTACTAACTCTATAA
ATTATTCATGATTTGTAAACTACAAAAGTACAAAATGAAACATTTCACTG
TTGATTGGAGGCCAGGATCGAAAAGCTTAGGCTAGCATATTTATACCTTG
TGAAAAGTACACTATCGCCTGGCCTAAAAATCTCAAGAAAACTGTATCCT
TAAAAAATAAATTACTTTTGCATAGTGTTTTGCAATAAAATATAAAAAAA
AAAAAAAAAAA

LD43023.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8321-RA 1455 CG8321-RA 37..1230 1..1194 5970 100 Plus
nc_6153.a 586 nc_6153.a 253..586 1194..861 1670 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7922997..7923482 708..1193 2430 100 Plus
chr2R 21145070 chr2R 7921170..7921654 1..485 2425 100 Plus
chr2R 21145070 chr2R 7922710..7922932 486..708 1115 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12035775..12036261 708..1194 2435 100 Plus
2R 25286936 2R 12033948..12034432 1..485 2425 100 Plus
2R 25286936 2R 12035488..12035710 486..708 1115 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12036974..12037460 708..1194 2435 100 Plus
2R 25260384 2R 12035147..12035631 1..485 2425 100 Plus
2R 25260384 2R 12036687..12036909 486..708 1115 100 Plus
Blast to na_te.dros performed on 2019-03-16 01:32:36 has no hits.

LD43023.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:33:17 Download gff for LD43023.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7922710..7922932 486..708 100 -> Plus
chr2R 7921170..7921654 1..485 100 -> Plus
chr2R 7922998..7923482 709..1193 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:25:31 Download gff for LD43023.complete
Subject Subject Range Query Range Percent Splice Strand
CG8321-RA 1..624 188..811 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:48:47 Download gff for LD43023.complete
Subject Subject Range Query Range Percent Splice Strand
CG8321-RA 1..624 188..811 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:07:35 Download gff for LD43023.complete
Subject Subject Range Query Range Percent Splice Strand
CG8321-RA 1..624 188..811 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:40:10 Download gff for LD43023.complete
Subject Subject Range Query Range Percent Splice Strand
CG8321-RA 1..624 188..811 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:36:26 Download gff for LD43023.complete
Subject Subject Range Query Range Percent Splice Strand
CG8321-RA 1..624 188..811 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:01:16 Download gff for LD43023.complete
Subject Subject Range Query Range Percent Splice Strand
CG8321-RA 1..1193 1..1193 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:48:47 Download gff for LD43023.complete
Subject Subject Range Query Range Percent Splice Strand
CG8321-RA 1..1193 1..1193 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:07:35 Download gff for LD43023.complete
Subject Subject Range Query Range Percent Splice Strand
CG8321-RA 3..1195 1..1193 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:40:10 Download gff for LD43023.complete
Subject Subject Range Query Range Percent Splice Strand
CG8321-RA 1..1193 1..1193 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:36:26 Download gff for LD43023.complete
Subject Subject Range Query Range Percent Splice Strand
CG8321-RA 3..1195 1..1193 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:33:17 Download gff for LD43023.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12033948..12034432 1..485 100 -> Plus
2R 12035488..12035710 486..708 100 -> Plus
2R 12035776..12036260 709..1193 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:33:17 Download gff for LD43023.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12033948..12034432 1..485 100 -> Plus
2R 12035488..12035710 486..708 100 -> Plus
2R 12035776..12036260 709..1193 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:33:17 Download gff for LD43023.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12033948..12034432 1..485 100 -> Plus
2R 12035488..12035710 486..708 100 -> Plus
2R 12035776..12036260 709..1193 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:07:35 Download gff for LD43023.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7921453..7921937 1..485 100 -> Plus
arm_2R 7922993..7923215 486..708 100 -> Plus
arm_2R 7923281..7923765 709..1193 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:10:33 Download gff for LD43023.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12035147..12035631 1..485 100 -> Plus
2R 12036687..12036909 486..708 100 -> Plus
2R 12036975..12037459 709..1193 100   Plus

LD43023.pep Sequence

Translation from 187 to 810

> LD43023.pep
MQVEPAEVGCDVTHRQQEKNKTNGIFSTAVRSKKNGQPNGRIYTSTPKTS
HPKLEHYVGVAKPSEKGRVGVVTALDPLIKKVALLFGTLIIGYKSVILTM
PYITGDSIQVLSHQVQSRWNETLVWATRHQLGSRLSPLLCGLLVAAFAYG
IVYLDSAVPGVNPPSPFTPRSKKRFREEKTASMHLGYLCALFCGFLVTVF
MYFDLYS*

LD43023.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12285-PA 205 GF12285-PA 6..204 10..207 658 62.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20238-PA 207 GG20238-PA 1..207 1..207 1013 90.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20853-PA 195 GH20853-PA 2..195 33..205 319 40.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8321-PA 207 CG8321-PA 1..207 1..207 1083 100 Plus
CG8321-PB 108 CG8321-PB 1..108 100..207 575 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20959-PA 179 GI20959-PA 6..179 33..205 261 41.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10520-PA 122 GL10520-PA 87..122 170..205 150 69.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20985-PA 196 GA20985-PA 2..196 21..205 592 58.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21326-PA 207 GM21326-PA 1..207 1..207 1068 95.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10833-PA 207 GD10833-PA 1..207 1..207 1072 96.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20680-PA 196 GJ20680-PA 2..196 33..205 327 45.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21336-PA 207 GK21336-PA 41..205 42..207 381 47.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12397-PA 207 GE12397-PA 1..207 1..207 1014 92.3 Plus

LD43023.hyp Sequence

Translation from 187 to 810

> LD43023.hyp
MQVEPAEVGCDVTHRQQEKNKTNGIFSTAVRSKKNGQPNGRIYTSTPKTS
HPKLEHYVGVAKPSEKGRVGVVTALDPLIKKVALLFGTLIIGYKSVILTM
PYITGDSIQVLSHQVQSRWNETLVWATRHQLGSRLSPLLCGLLVAAFAYG
IVYLDSAVPGVNPPSPFTPRSKKRFREEKTASMHLGYLCALFCGFLVTVF
MYFDLYS*

LD43023.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8321-PA 207 CG8321-PA 1..207 1..207 1083 100 Plus
CG8321-PB 108 CG8321-PB 1..108 100..207 575 100 Plus