BDGP Sequence Production Resources |
Search the DGRC for LD43051
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 430 |
Well: | 51 |
Vector: | pOT2 |
Associated Gene/Transcript | inc-RB |
Protein status: | LD43051.pep: gold |
Sequenced Size: | 2271 |
Gene | Date | Evidence |
---|---|---|
CG32810 | 2010-06-25 | Manual selection by Sue Celniker |
2271 bp assembled on 2011-02-17
GenBank Submission: BT126052.1
> LD43051.complete TCTTGTTTATTAATGAATTAATTAATTAGTCCAAGTTAACTAAAAAAAGT CGAAAAACAGCGAAATCGGCGTAGTCAGCGTGCCCAAGTGGAGTACCCCC AGCGAACAGAGGCAGCGACAGAGTGCAAGAGTGCAAGAGCAAGACGCAGT CGAAGGCCAGGCCACAAGGCGCAGCAACGCAACAAAGACGCAAGCGAAGA AGAAAAGCATGAGCTGAGGCTGTCGTCGCCAGCAAGCAAGGGAATCGCGC GGACAATAAGAGTAGGAGCAGGAGCAGGAGTAGGACAGGAGTGGGAGCAC GAGCAGCAAAGGAGCACCAACCCAGCGGAGCACCCGAACCGCAGCAGCGG CAACACCATCATGAGCACGGTGTTCATAAACTCGCGCAAGAGCCCCAACG TGCTGAAAAAACAGGGCACCGACCAGTGGGTCAAGCTGAACGTAGGCGGT ACCTACTTCCTCACCACAAAGACGACGCTCTCCCGTGACCCAAATTCGTT CCTCTCCCGTCTGATTCAGGAGGACTGCGACTTGATATCAGATCGGGACG AGACAGGAGCCTACCTGATCGACAGAGACCCCAAATACTTTGCACCCGTG CTCAATTACCTGCGCCACGGCAAGCTTGTGCTCGATGGCGTCTCAGAGGA AGGCGTCCTGGAGGAGGCTGAGTTCTACAACGTGACGCAGCTGATAGCGC TGCTGAAGGAGTGCATCCTGCACAGGGATCAGCGACCCCAAACGGACAAG AAGCGCGTTTATCGTGTGCTGCAGTGCCGCGAGCAGGAACTAACCCAGAT GATCTCAACGCTGTCGGATGGCTGGAGGTTCGAGCAGCTGATCAGCATGC AGTACACGAACTACGGGCCCTTCGAAAACAATGAGTTCCTGTGCGTGGTA TCCAAAGAGTGTGGCACAACGGCCGGCCGGGAGCTGGAGCTCAACGACCG GGCCAAGGTCCTGCAGCAGAAGGGATCGCGAATTCTTGGAATTTAATCGC GCTATATATTCACACACAACCCTTGAAAATTTAAATACCGAACTTCATCA ACATACAACTCATTCCCAATCAGTAACACAATCAGCCACTCAGCCACACC GACCCAACACCAATTGGATGCAGCCAAGGAAGCCCGAGCCACAGCCACAG CCACATCAAACACCACAAACCACACGCGATCAGATCAGACTCAGCCACAG GCACAGATCACCCACCAAGATCAGCCGGAATCACCAAAGCAGAGCCCGCA GGGAGACTACGCTTCATTTGCATTCGAGACAAAGTTAACAGGTACCACTG CGATTCGATTCTCGCCCTTGTGGCCGTTTTGCGCACTGTACGAAGTGTGT GCGGGCGTGCATGTGTTCAACTTGTAGTAAACCAGATAGACCCGACTGTA CGAGCAACAAGAAACCAGCCCTGCTTCGTTGCGCCCAATAGCCAGGCGGC TGAATTAGACTCAGTTTCGAGCTTAAGCTTTGCTTCAAGTGGCACGCGCG AACCAGCCAGCCAGCCAGCCAGTCAGTCAGTCAGTTAGCCAGACATTTAG CAGAGGATCCTTCCGAGCCGCTGGGCTACTGGGACACTCAATAAGCTAGG TATATACACATTTAGCGGGAGTTTGTAGGGTTAGTCTTAGTAGTTTTTAT CGTGCTTACAATAACGACCCTGACGACGCAGCGGACACTTCGCTGGAGCA GTCGCGATTCCCTTGGTTAAGCACCCAACTAACTTACAGTACCGCACTAG GTTCGAGCTGCATTTACGTGTCCGATACCGATACCGATACCAATACCAAT ACCAGGCCCTCTGCACCCGAAATCCGAGTCCCCCGGAATTTGTAGAGTCG CAGAGTTCTGCTCCGTAGTTCTGCTGCTTGCTGTACTCTTGAACTGGTGA GCGGTAGGAGCGTACGTGTGGTCCGTTTTGTGTAGGCCCGGTTTTACTAC CTTGAGCTTTATTTTAGAAAACGAGCAAGGCGAAGATCAACTTTAGGAAA TCAATTGAATCACGACTGAATTTATGTGAACTTGCACTCAAAGAAAATAC ATACATGCGAATACATTATAGTGAGGATATACATGTGTGAAAAAGAAAAT GATTAACGAAAATGAAAACCTATCCGGCGACGTTTTGTACAGACAGGCAT GATATCTATAATATGATAAGTACTACATGAATGTATATAATTTTAAATAG TTACTAATTTATACACGAAAAAGAAAACAAGCGAAAATTGAAGATGATCC AGAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 1409256..1410516 | 984..2252 | 6190 | 99.4 | Plus |
chrX | 22417052 | chrX | 1406981..1407527 | 1..547 | 2735 | 100 | Plus |
chrX | 22417052 | chrX | 1408732..1408919 | 796..983 | 940 | 100 | Plus |
chrX | 22417052 | chrX | 1408360..1408546 | 546..732 | 935 | 100 | Plus |
chrX | 22417052 | chrX | 1408602..1408674 | 730..802 | 350 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 1515378..1516648 | 984..2254 | 6355 | 100 | Plus |
X | 23542271 | X | 1513103..1513649 | 1..547 | 2735 | 100 | Plus |
X | 23542271 | X | 1514854..1515041 | 796..983 | 940 | 100 | Plus |
X | 23542271 | X | 1514482..1514668 | 546..732 | 935 | 100 | Plus |
X | 23542271 | X | 1514724..1514796 | 730..802 | 350 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 1523476..1524746 | 984..2254 | 6355 | 100 | Plus |
Unmapped_scaffold_56 | 21045 | Unmapped_scaffold_56 | 8022..9292 | 2254..984 | 6355 | 100 | Minus |
X | 23527363 | X | 1521201..1521747 | 1..547 | 2735 | 100 | Plus |
Unmapped_scaffold_56 | 21045 | Unmapped_scaffold_56 | 11021..11567 | 547..1 | 2735 | 100 | Minus |
X | 23527363 | X | 1522952..1523139 | 796..983 | 940 | 100 | Plus |
Unmapped_scaffold_56 | 21045 | Unmapped_scaffold_56 | 9629..9816 | 983..796 | 940 | 100 | Minus |
X | 23527363 | X | 1522580..1522766 | 546..732 | 935 | 100 | Plus |
Unmapped_scaffold_56 | 21045 | Unmapped_scaffold_56 | 10002..10188 | 732..546 | 935 | 100 | Minus |
X | 23527363 | X | 1522822..1522894 | 730..802 | 350 | 98.6 | Plus |
Unmapped_scaffold_56 | 21045 | Unmapped_scaffold_56 | 9874..9946 | 802..730 | 350 | 98.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 1408361..1408546 | 547..732 | 100 | -> | Plus |
chrX | 1408605..1408670 | 733..798 | 100 | -> | Plus |
chrX | 1406981..1407526 | 1..546 | 100 | -> | Plus |
chrX | 1408735..1408919 | 799..983 | 100 | -> | Plus |
chrX | 1409256..1410516 | 984..2252 | 96 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32810-RB | 1..636 | 361..996 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
inc-RB | 1..636 | 361..996 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
inc-RB | 1..636 | 361..996 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32810-RB | 45..2296 | 1..2252 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
inc-RB | 34..2285 | 1..2252 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
inc-RB | 34..2285 | 1..2252 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1514857..1515041 | 799..983 | 100 | -> | Plus |
X | 1514483..1514668 | 547..732 | 100 | -> | Plus |
X | 1514727..1514792 | 733..798 | 100 | -> | Plus |
X | 1513103..1513648 | 1..546 | 100 | -> | Plus |
X | 1515378..1516646 | 984..2252 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1514857..1515041 | 799..983 | 100 | -> | Plus |
X | 1514483..1514668 | 547..732 | 100 | -> | Plus |
X | 1514727..1514792 | 733..798 | 100 | -> | Plus |
X | 1513103..1513648 | 1..546 | 100 | -> | Plus |
X | 1515378..1516646 | 984..2252 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1514857..1515041 | 799..983 | 100 | -> | Plus |
X | 1514483..1514668 | 547..732 | 100 | -> | Plus |
X | 1514727..1514792 | 733..798 | 100 | -> | Plus |
X | 1513103..1513648 | 1..546 | 100 | -> | Plus |
X | 1515378..1516646 | 984..2252 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 1407136..1407681 | 1..546 | 100 | -> | Plus |
arm_X | 1408516..1408701 | 547..732 | 100 | -> | Plus |
arm_X | 1408760..1408825 | 733..798 | 100 | -> | Plus |
arm_X | 1408890..1409074 | 799..983 | 100 | -> | Plus |
arm_X | 1409411..1410679 | 984..2252 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Unmapped_scaffold_56 | 8024..9292 | 984..2252 | 100 | <- | Minus |
Unmapped_scaffold_56 | 9629..9813 | 799..983 | 100 | <- | Minus |
Unmapped_scaffold_56 | 9878..9943 | 733..798 | 100 | <- | Minus |
Unmapped_scaffold_56 | 10002..10187 | 547..732 | 100 | <- | Minus |
Unmapped_scaffold_56 | 11022..11567 | 1..546 | 100 | Minus |
Translation from 360 to 995
> LD43051.pep MSTVFINSRKSPNVLKKQGTDQWVKLNVGGTYFLTTKTTLSRDPNSFLSR LIQEDCDLISDRDETGAYLIDRDPKYFAPVLNYLRHGKLVLDGVSEEGVL EEAEFYNVTQLIALLKECILHRDQRPQTDKKRVYRVLQCREQELTQMIST LSDGWRFEQLISMQYTNYGPFENNEFLCVVSKECGTTAGRELELNDRAKV LQQKGSRILGI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20912-PA | 266 | GF20912-PA | 57..266 | 1..208 | 1097 | 97.6 | Plus |
Dana\GF18213-PA | 331 | GF18213-PA | 28..145 | 21..136 | 274 | 47.9 | Plus |
Dana\GF17150-PA | 739 | GF17150-PA | 13..105 | 24..118 | 159 | 38.9 | Plus |
Dana\GF21506-PA | 297 | GF21506-PA | 7..119 | 14..127 | 144 | 34.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12864-PA | 208 | GG12864-PA | 1..208 | 1..208 | 1083 | 97.1 | Plus |
Dere\GG12384-PA | 335 | GG12384-PA | 20..157 | 10..138 | 264 | 41.3 | Plus |
Dere\GG17322-PA | 727 | GG17322-PA | 13..105 | 24..118 | 163 | 38.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17955-PA | 210 | GH17955-PA | 1..210 | 1..208 | 1065 | 95.2 | Plus |
Dgri\GH14079-PA | 324 | GH14079-PA | 20..138 | 20..136 | 266 | 45.8 | Plus |
Dgri\GH14231-PA | 810 | GH14231-PA | 13..105 | 24..118 | 159 | 38.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
inc-PC | 211 | CG32810-PC | 1..211 | 1..211 | 1096 | 100 | Plus |
inc-PD | 211 | CG32810-PD | 1..211 | 1..211 | 1096 | 100 | Plus |
inc-PB | 211 | CG32810-PB | 1..211 | 1..211 | 1096 | 100 | Plus |
CG14647-PB | 335 | CG14647-PB | 33..157 | 21..138 | 247 | 44 | Plus |
CG9467-PA | 730 | CG9467-PA | 13..105 | 24..118 | 152 | 38.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16490-PA | 210 | GI16490-PA | 1..210 | 1..208 | 1055 | 94.8 | Plus |
Dmoj\GI10612-PA | 329 | GI10612-PA | 27..151 | 20..138 | 259 | 44 | Plus |
Dmoj\GI22137-PA | 787 | GI22137-PA | 13..105 | 24..118 | 163 | 38.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14263-PA | 210 | GL14263-PA | 1..210 | 1..208 | 1013 | 91 | Plus |
Dper\GL21465-PA | 331 | GL21465-PA | 19..140 | 11..130 | 276 | 48 | Plus |
Dper\GL23225-PA | 395 | GL23225-PA | 13..105 | 24..118 | 159 | 38.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17157-PA | 210 | GA17157-PA | 1..210 | 1..208 | 1013 | 91 | Plus |
Dpse\GA13145-PA | 331 | GA13145-PA | 19..140 | 11..130 | 276 | 48 | Plus |
Dpse\GA21809-PA | 751 | GA21809-PA | 13..105 | 24..118 | 159 | 38.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19148-PA | 211 | GM19148-PA | 1..211 | 1..211 | 1120 | 99.5 | Plus |
Dsec\GM10753-PA | 335 | GM10753-PA | 33..157 | 21..138 | 268 | 44.8 | Plus |
Dsec\GM26209-PA | 730 | GM26209-PA | 13..105 | 24..118 | 160 | 38.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24718-PA | 211 | GD24718-PA | 1..211 | 1..211 | 1120 | 99.5 | Plus |
Dsim\GD19728-PA | 335 | GD19728-PA | 33..157 | 21..138 | 267 | 44.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16035-PA | 210 | GJ16035-PA | 1..210 | 1..208 | 1067 | 95.7 | Plus |
Dvir\GJ17095-PA | 137 | GJ17095-PA | 28..100 | 20..90 | 211 | 53.4 | Plus |
Dvir\GJ24256-PA | 795 | GJ24256-PA | 13..105 | 24..118 | 163 | 38.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14663-PA | 210 | GK14663-PA | 1..210 | 1..208 | 1070 | 95.7 | Plus |
Dwil\GK13533-PA | 324 | GK13533-PA | 17..138 | 17..136 | 302 | 48 | Plus |
Dwil\GK14512-PA | 756 | GK14512-PA | 8..105 | 19..118 | 165 | 38 | Plus |
Translation from 360 to 995
> LD43051.hyp MSTVFINSRKSPNVLKKQGTDQWVKLNVGGTYFLTTKTTLSRDPNSFLSR LIQEDCDLISDRDETGAYLIDRDPKYFAPVLNYLRHGKLVLDGVSEEGVL EEAEFYNVTQLIALLKECILHRDQRPQTDKKRVYRVLQCREQELTQMIST LSDGWRFEQLISMQYTNYGPFENNEFLCVVSKECGTTAGRELELNDRAKV LQQKGSRILGI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
inc-PC | 211 | CG32810-PC | 1..211 | 1..211 | 1096 | 100 | Plus |
inc-PD | 211 | CG32810-PD | 1..211 | 1..211 | 1096 | 100 | Plus |
inc-PB | 211 | CG32810-PB | 1..211 | 1..211 | 1096 | 100 | Plus |
CG14647-PB | 335 | CG14647-PB | 33..157 | 21..138 | 247 | 44 | Plus |
CG9467-PA | 730 | CG9467-PA | 13..105 | 24..118 | 152 | 38.9 | Plus |