Clone LD43051 Report

Search the DGRC for LD43051

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:430
Well:51
Vector:pOT2
Associated Gene/Transcriptinc-RB
Protein status:LD43051.pep: gold
Sequenced Size:2271

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32810 2010-06-25 Manual selection by Sue Celniker

Clone Sequence Records

LD43051.complete Sequence

2271 bp assembled on 2011-02-17

GenBank Submission: BT126052.1

> LD43051.complete
TCTTGTTTATTAATGAATTAATTAATTAGTCCAAGTTAACTAAAAAAAGT
CGAAAAACAGCGAAATCGGCGTAGTCAGCGTGCCCAAGTGGAGTACCCCC
AGCGAACAGAGGCAGCGACAGAGTGCAAGAGTGCAAGAGCAAGACGCAGT
CGAAGGCCAGGCCACAAGGCGCAGCAACGCAACAAAGACGCAAGCGAAGA
AGAAAAGCATGAGCTGAGGCTGTCGTCGCCAGCAAGCAAGGGAATCGCGC
GGACAATAAGAGTAGGAGCAGGAGCAGGAGTAGGACAGGAGTGGGAGCAC
GAGCAGCAAAGGAGCACCAACCCAGCGGAGCACCCGAACCGCAGCAGCGG
CAACACCATCATGAGCACGGTGTTCATAAACTCGCGCAAGAGCCCCAACG
TGCTGAAAAAACAGGGCACCGACCAGTGGGTCAAGCTGAACGTAGGCGGT
ACCTACTTCCTCACCACAAAGACGACGCTCTCCCGTGACCCAAATTCGTT
CCTCTCCCGTCTGATTCAGGAGGACTGCGACTTGATATCAGATCGGGACG
AGACAGGAGCCTACCTGATCGACAGAGACCCCAAATACTTTGCACCCGTG
CTCAATTACCTGCGCCACGGCAAGCTTGTGCTCGATGGCGTCTCAGAGGA
AGGCGTCCTGGAGGAGGCTGAGTTCTACAACGTGACGCAGCTGATAGCGC
TGCTGAAGGAGTGCATCCTGCACAGGGATCAGCGACCCCAAACGGACAAG
AAGCGCGTTTATCGTGTGCTGCAGTGCCGCGAGCAGGAACTAACCCAGAT
GATCTCAACGCTGTCGGATGGCTGGAGGTTCGAGCAGCTGATCAGCATGC
AGTACACGAACTACGGGCCCTTCGAAAACAATGAGTTCCTGTGCGTGGTA
TCCAAAGAGTGTGGCACAACGGCCGGCCGGGAGCTGGAGCTCAACGACCG
GGCCAAGGTCCTGCAGCAGAAGGGATCGCGAATTCTTGGAATTTAATCGC
GCTATATATTCACACACAACCCTTGAAAATTTAAATACCGAACTTCATCA
ACATACAACTCATTCCCAATCAGTAACACAATCAGCCACTCAGCCACACC
GACCCAACACCAATTGGATGCAGCCAAGGAAGCCCGAGCCACAGCCACAG
CCACATCAAACACCACAAACCACACGCGATCAGATCAGACTCAGCCACAG
GCACAGATCACCCACCAAGATCAGCCGGAATCACCAAAGCAGAGCCCGCA
GGGAGACTACGCTTCATTTGCATTCGAGACAAAGTTAACAGGTACCACTG
CGATTCGATTCTCGCCCTTGTGGCCGTTTTGCGCACTGTACGAAGTGTGT
GCGGGCGTGCATGTGTTCAACTTGTAGTAAACCAGATAGACCCGACTGTA
CGAGCAACAAGAAACCAGCCCTGCTTCGTTGCGCCCAATAGCCAGGCGGC
TGAATTAGACTCAGTTTCGAGCTTAAGCTTTGCTTCAAGTGGCACGCGCG
AACCAGCCAGCCAGCCAGCCAGTCAGTCAGTCAGTTAGCCAGACATTTAG
CAGAGGATCCTTCCGAGCCGCTGGGCTACTGGGACACTCAATAAGCTAGG
TATATACACATTTAGCGGGAGTTTGTAGGGTTAGTCTTAGTAGTTTTTAT
CGTGCTTACAATAACGACCCTGACGACGCAGCGGACACTTCGCTGGAGCA
GTCGCGATTCCCTTGGTTAAGCACCCAACTAACTTACAGTACCGCACTAG
GTTCGAGCTGCATTTACGTGTCCGATACCGATACCGATACCAATACCAAT
ACCAGGCCCTCTGCACCCGAAATCCGAGTCCCCCGGAATTTGTAGAGTCG
CAGAGTTCTGCTCCGTAGTTCTGCTGCTTGCTGTACTCTTGAACTGGTGA
GCGGTAGGAGCGTACGTGTGGTCCGTTTTGTGTAGGCCCGGTTTTACTAC
CTTGAGCTTTATTTTAGAAAACGAGCAAGGCGAAGATCAACTTTAGGAAA
TCAATTGAATCACGACTGAATTTATGTGAACTTGCACTCAAAGAAAATAC
ATACATGCGAATACATTATAGTGAGGATATACATGTGTGAAAAAGAAAAT
GATTAACGAAAATGAAAACCTATCCGGCGACGTTTTGTACAGACAGGCAT
GATATCTATAATATGATAAGTACTACATGAATGTATATAATTTTAAATAG
TTACTAATTTATACACGAAAAAGAAAACAAGCGAAAATTGAAGATGATCC
AGAAAAAAAAAAAAAAAAAAA

LD43051.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1409256..1410516 984..2252 6190 99.4 Plus
chrX 22417052 chrX 1406981..1407527 1..547 2735 100 Plus
chrX 22417052 chrX 1408732..1408919 796..983 940 100 Plus
chrX 22417052 chrX 1408360..1408546 546..732 935 100 Plus
chrX 22417052 chrX 1408602..1408674 730..802 350 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1515378..1516648 984..2254 6355 100 Plus
X 23542271 X 1513103..1513649 1..547 2735 100 Plus
X 23542271 X 1514854..1515041 796..983 940 100 Plus
X 23542271 X 1514482..1514668 546..732 935 100 Plus
X 23542271 X 1514724..1514796 730..802 350 98.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1523476..1524746 984..2254 6355 100 Plus
Unmapped_scaffold_56 21045 Unmapped_scaffold_56 8022..9292 2254..984 6355 100 Minus
X 23527363 X 1521201..1521747 1..547 2735 100 Plus
Unmapped_scaffold_56 21045 Unmapped_scaffold_56 11021..11567 547..1 2735 100 Minus
X 23527363 X 1522952..1523139 796..983 940 100 Plus
Unmapped_scaffold_56 21045 Unmapped_scaffold_56 9629..9816 983..796 940 100 Minus
X 23527363 X 1522580..1522766 546..732 935 100 Plus
Unmapped_scaffold_56 21045 Unmapped_scaffold_56 10002..10188 732..546 935 100 Minus
X 23527363 X 1522822..1522894 730..802 350 98.6 Plus
Unmapped_scaffold_56 21045 Unmapped_scaffold_56 9874..9946 802..730 350 98.6 Minus
Blast to na_te.dros performed on 2019-03-17 01:41:32 has no hits.

LD43051.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:42:15 Download gff for LD43051.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1408361..1408546 547..732 100 -> Plus
chrX 1408605..1408670 733..798 100 -> Plus
chrX 1406981..1407526 1..546 100 -> Plus
chrX 1408735..1408919 799..983 100 -> Plus
chrX 1409256..1410516 984..2252 96   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-02-17 12:46:44 Download gff for LD43051.complete
Subject Subject Range Query Range Percent Splice Strand
CG32810-RB 1..636 361..996 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:49:01 Download gff for LD43051.complete
Subject Subject Range Query Range Percent Splice Strand
inc-RB 1..636 361..996 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:07:30 Download gff for LD43051.complete
Subject Subject Range Query Range Percent Splice Strand
inc-RB 1..636 361..996 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 12:46:44 Download gff for LD43051.complete
Subject Subject Range Query Range Percent Splice Strand
CG32810-RB 45..2296 1..2252 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:49:01 Download gff for LD43051.complete
Subject Subject Range Query Range Percent Splice Strand
inc-RB 34..2285 1..2252 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:07:30 Download gff for LD43051.complete
Subject Subject Range Query Range Percent Splice Strand
inc-RB 34..2285 1..2252 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:42:15 Download gff for LD43051.complete
Subject Subject Range Query Range Percent Splice Strand
X 1514857..1515041 799..983 100 -> Plus
X 1514483..1514668 547..732 100 -> Plus
X 1514727..1514792 733..798 100 -> Plus
X 1513103..1513648 1..546 100 -> Plus
X 1515378..1516646 984..2252 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:42:15 Download gff for LD43051.complete
Subject Subject Range Query Range Percent Splice Strand
X 1514857..1515041 799..983 100 -> Plus
X 1514483..1514668 547..732 100 -> Plus
X 1514727..1514792 733..798 100 -> Plus
X 1513103..1513648 1..546 100 -> Plus
X 1515378..1516646 984..2252 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:42:15 Download gff for LD43051.complete
Subject Subject Range Query Range Percent Splice Strand
X 1514857..1515041 799..983 100 -> Plus
X 1514483..1514668 547..732 100 -> Plus
X 1514727..1514792 733..798 100 -> Plus
X 1513103..1513648 1..546 100 -> Plus
X 1515378..1516646 984..2252 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:49:01 Download gff for LD43051.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1407136..1407681 1..546 100 -> Plus
arm_X 1408516..1408701 547..732 100 -> Plus
arm_X 1408760..1408825 733..798 100 -> Plus
arm_X 1408890..1409074 799..983 100 -> Plus
arm_X 1409411..1410679 984..2252 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:58:48 Download gff for LD43051.complete
Subject Subject Range Query Range Percent Splice Strand
Unmapped_scaffold_56 8024..9292 984..2252 100 <- Minus
Unmapped_scaffold_56 9629..9813 799..983 100 <- Minus
Unmapped_scaffold_56 9878..9943 733..798 100 <- Minus
Unmapped_scaffold_56 10002..10187 547..732 100 <- Minus
Unmapped_scaffold_56 11022..11567 1..546 100   Minus

LD43051.pep Sequence

Translation from 360 to 995

> LD43051.pep
MSTVFINSRKSPNVLKKQGTDQWVKLNVGGTYFLTTKTTLSRDPNSFLSR
LIQEDCDLISDRDETGAYLIDRDPKYFAPVLNYLRHGKLVLDGVSEEGVL
EEAEFYNVTQLIALLKECILHRDQRPQTDKKRVYRVLQCREQELTQMIST
LSDGWRFEQLISMQYTNYGPFENNEFLCVVSKECGTTAGRELELNDRAKV
LQQKGSRILGI*

LD43051.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20912-PA 266 GF20912-PA 57..266 1..208 1097 97.6 Plus
Dana\GF18213-PA 331 GF18213-PA 28..145 21..136 274 47.9 Plus
Dana\GF17150-PA 739 GF17150-PA 13..105 24..118 159 38.9 Plus
Dana\GF21506-PA 297 GF21506-PA 7..119 14..127 144 34.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12864-PA 208 GG12864-PA 1..208 1..208 1083 97.1 Plus
Dere\GG12384-PA 335 GG12384-PA 20..157 10..138 264 41.3 Plus
Dere\GG17322-PA 727 GG17322-PA 13..105 24..118 163 38.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17955-PA 210 GH17955-PA 1..210 1..208 1065 95.2 Plus
Dgri\GH14079-PA 324 GH14079-PA 20..138 20..136 266 45.8 Plus
Dgri\GH14231-PA 810 GH14231-PA 13..105 24..118 159 38.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
inc-PC 211 CG32810-PC 1..211 1..211 1096 100 Plus
inc-PD 211 CG32810-PD 1..211 1..211 1096 100 Plus
inc-PB 211 CG32810-PB 1..211 1..211 1096 100 Plus
CG14647-PB 335 CG14647-PB 33..157 21..138 247 44 Plus
CG9467-PA 730 CG9467-PA 13..105 24..118 152 38.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16490-PA 210 GI16490-PA 1..210 1..208 1055 94.8 Plus
Dmoj\GI10612-PA 329 GI10612-PA 27..151 20..138 259 44 Plus
Dmoj\GI22137-PA 787 GI22137-PA 13..105 24..118 163 38.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14263-PA 210 GL14263-PA 1..210 1..208 1013 91 Plus
Dper\GL21465-PA 331 GL21465-PA 19..140 11..130 276 48 Plus
Dper\GL23225-PA 395 GL23225-PA 13..105 24..118 159 38.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17157-PA 210 GA17157-PA 1..210 1..208 1013 91 Plus
Dpse\GA13145-PA 331 GA13145-PA 19..140 11..130 276 48 Plus
Dpse\GA21809-PA 751 GA21809-PA 13..105 24..118 159 38.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19148-PA 211 GM19148-PA 1..211 1..211 1120 99.5 Plus
Dsec\GM10753-PA 335 GM10753-PA 33..157 21..138 268 44.8 Plus
Dsec\GM26209-PA 730 GM26209-PA 13..105 24..118 160 38.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24718-PA 211 GD24718-PA 1..211 1..211 1120 99.5 Plus
Dsim\GD19728-PA 335 GD19728-PA 33..157 21..138 267 44.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16035-PA 210 GJ16035-PA 1..210 1..208 1067 95.7 Plus
Dvir\GJ17095-PA 137 GJ17095-PA 28..100 20..90 211 53.4 Plus
Dvir\GJ24256-PA 795 GJ24256-PA 13..105 24..118 163 38.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14663-PA 210 GK14663-PA 1..210 1..208 1070 95.7 Plus
Dwil\GK13533-PA 324 GK13533-PA 17..138 17..136 302 48 Plus
Dwil\GK14512-PA 756 GK14512-PA 8..105 19..118 165 38 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25415-PA 335 GE25415-PA 21..157 11..138 264 42.3 Plus
Dyak\GE24726-PA 728 GE24726-PA 13..105 24..118 163 38.9 Plus

LD43051.hyp Sequence

Translation from 360 to 995

> LD43051.hyp
MSTVFINSRKSPNVLKKQGTDQWVKLNVGGTYFLTTKTTLSRDPNSFLSR
LIQEDCDLISDRDETGAYLIDRDPKYFAPVLNYLRHGKLVLDGVSEEGVL
EEAEFYNVTQLIALLKECILHRDQRPQTDKKRVYRVLQCREQELTQMIST
LSDGWRFEQLISMQYTNYGPFENNEFLCVVSKECGTTAGRELELNDRAKV
LQQKGSRILGI*

LD43051.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
inc-PC 211 CG32810-PC 1..211 1..211 1096 100 Plus
inc-PD 211 CG32810-PD 1..211 1..211 1096 100 Plus
inc-PB 211 CG32810-PB 1..211 1..211 1096 100 Plus
CG14647-PB 335 CG14647-PB 33..157 21..138 247 44 Plus
CG9467-PA 730 CG9467-PA 13..105 24..118 152 38.9 Plus