Clone LD43096 Report

Search the DGRC for LD43096

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:430
Well:96
Vector:pOT2
Associated Gene/TranscriptCG32428-RA
Protein status:LD43096.pep: gold
Preliminary Size:2788
Sequenced Size:1196

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5145 2001-01-01 Release 2 assignment
CG13249 2001-01-01 Release 2 assignment
CG32428 2001-09-19 Blastp of sequenced clone
CG32428 2003-01-01 Sim4 clustering to Release 3
CG32428 2008-04-29 Release 5.5 accounting
CG32428 2008-08-15 Release 5.9 accounting
CG32428 2008-12-18 5.12 accounting

Clone Sequence Records

LD43096.complete Sequence

1196 bp (1196 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060430

> LD43096.complete
TGAATCGAAAGGCGCACGCGGCAAAATGTAAAACTTGCTTATTGGTTTAT
TTTTAACAGTTGCCGTCACCGCATTTACAGTCGCATTTCGGCCGAATGCT
CGCGCGCCCCGCTTGCGTGTGTTAATTGAATTATTTCATCCATTTTAGCA
ACTGCTGCGTATTTTCGGCGCTTATTAAGCCGACAGAGCCATCAAAATCC
ATACTGCATACAAATACGATTTCAATTAGGGGAAAAATACGCGCCTGCAG
TTCGCCGCACGATTTCGTACAGTACAGTACGGACGCAGAGGAGCGTTTTT
TCCGAATTTACTGTACTTGCTTTTCGGTTTTTTTGGGGAAATTCCACTGC
AGCTGGCGCGCGATGGTTTTGACGAACTTCGAGTGCTGGGCACATGGTGA
TCCGTCGTCGTCGGCGGCCGCCACTTTCGAAACTGGAGCGCTGCGTCCTT
CGATGGATCCGTTCAATCCACGCGCCGTCACCTTCATGACCGACGCCAAC
AACAACAACAACAACAATGATGGCAATAACCTCGCGGCACAACCGATGCC
GGTCGTCCTGCCTCCGGAAGTCCTGCGCTGCAAGAAGCGCCTGAATCCCG
GTCACAATCCTGTCGGGGATTTGGACACGGACCAACCGGTGTACACCAAG
AGATGTCGCTACGACGAGTCTGACTTGGCCGCCCAGTACTGCAATGATTT
CTTTTCCTTGCCTGCCACACAAATAATTGGAACGCAGGCCTCTTTGATGG
ATTACGAGATGCAGGCCACCGGCGGCATGATGATGATGGAATCGGAGACG
AGTTTTCCAGCGCAGCAGCAGCAACATCAAGAGCAACAGCAACATCCACA
GCAGCCACATCAATATCAGCGCATTCATCAGCATTATCAAGGTCATTTGC
ATCGCGCCAACCGTGATGTGAGTCGTTGCATGATGTCGCACATGATTTAG
GGGCCCTCGTTCACACAAAACTCAAAATGTACATATATAACCCAAAACAT
GTACTGTAGCTGAGAAAAGCGCACAAGAAACACATGCAACAGTTCACCGA
GCGACGCGTCTCTCTTTATTTGCTAAACAGCCGACAATGTATCGAAAAAT
GTTCGCATATCACTCAGAAAGCAAATTAACGCAAAGGAGCAATTGAATTG
AAAATATCCGCAATGCACATACCCACCGAAAAAAAAAAAAAAAAAA

LD43096.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG32428.b 1912 CG32428.b 160..1336 1..1177 5870 99.9 Plus
CG32428-RA 1362 CG32428-RA 160..1336 1..1177 5870 99.9 Plus
CG32428-RB 1137 CG32428-RB 104..1137 144..1177 5155 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20461653..20462348 696..1 3480 100 Minus
chr3L 24539361 chr3L 20459679..20460160 1177..696 2395 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20472641..20473336 696..1 3480 100 Minus
3L 28110227 3L 20470668..20471149 1177..696 2395 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20465741..20466436 696..1 3480 100 Minus
3L 28103327 3L 20463768..20464249 1177..696 2395 99.7 Minus
Blast to na_te.dros performed on 2019-03-16 22:06:35 has no hits.

LD43096.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:07:17 Download gff for LD43096.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20459678..20459985 871..1178 99 == Minus
chr3L 20460049..20460159 697..807 100 <- Minus
chr3L 20461653..20462348 1..696 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:25:40 Download gff for LD43096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RB 1..588 363..950 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:59:11 Download gff for LD43096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RB 1..588 363..950 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:10:08 Download gff for LD43096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 1..588 363..950 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:29:34 Download gff for LD43096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 1..588 363..950 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:31 Download gff for LD43096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 1..588 363..950 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:46:14 Download gff for LD43096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 13..1189 1..1177 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:59:11 Download gff for LD43096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 13..1189 1..1177 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:08 Download gff for LD43096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 37..1213 1..1177 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:29:34 Download gff for LD43096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 13..1189 1..1178 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:31 Download gff for LD43096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 37..1213 1..1177 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:17 Download gff for LD43096.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20470667..20471148 697..1178 99 <- Minus
3L 20472641..20473336 1..696 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:17 Download gff for LD43096.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20470667..20471148 697..1178 99 <- Minus
3L 20472641..20473336 1..696 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:17 Download gff for LD43096.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20470667..20471148 697..1178 99 <- Minus
3L 20472641..20473336 1..696 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:08 Download gff for LD43096.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20463767..20464248 697..1178 99 <- Minus
arm_3L 20465741..20466436 1..696 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:05:54 Download gff for LD43096.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20463767..20464248 697..1178 99 <- Minus
3L 20465741..20466436 1..696 100   Minus

LD43096.pep Sequence

Translation from 362 to 949

> LD43096.pep
MVLTNFECWAHGDPSSSAAATFETGALRPSMDPFNPRAVTFMTDANNNNN
NNDGNNLAAQPMPVVLPPEVLRCKKRLNPGHNPVGDLDTDQPVYTKRCRY
DESDLAAQYCNDFFSLPATQIIGTQASLMDYEMQATGGMMMMESETSFPA
QQQQHQEQQQHPQQPHQYQRIHQHYQGHLHRANRDVSRCMMSHMI*

LD43096.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24128-PA 189 GF24128-PA 1..189 1..195 551 67 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13306-PA 188 GG13306-PA 1..188 1..195 750 86.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17014-PA 224 GH17014-PA 1..224 1..195 373 43.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32428-PB 195 CG32428-PB 1..195 1..195 1066 100 Plus
CG32428-PA 195 CG32428-PA 1..195 1..195 1066 100 Plus
CG32428-PC 238 CG32428-PC 1..176 1..176 961 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11908-PA 226 GI11908-PA 1..226 1..195 372 44.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12773-PA 188 GL12773-PA 1..188 1..195 495 55.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16894-PA 187 GA16894-PA 1..187 1..195 479 54.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22210-PA 195 GM22210-PA 1..195 1..195 1008 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12182-PA 193 GD12182-PA 1..193 1..195 995 96.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13782-PA 214 GJ13782-PA 1..214 1..195 352 45.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12339-PA 204 GK12339-PA 1..204 1..195 361 47.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22396-PA 185 GE22396-PA 1..185 1..195 777 85.6 Plus

LD43096.hyp Sequence

Translation from 362 to 949

> LD43096.hyp
MVLTNFECWAHGDPSSSAAATFETGALRPSMDPFNPRAVTFMTDANNNNN
NNDGNNLAAQPMPVVLPPEVLRCKKRLNPGHNPVGDLDTDQPVYTKRCRY
DESDLAAQYCNDFFSLPATQIIGTQASLMDYEMQATGGMMMMESETSFPA
QQQQHQEQQQHPQQPHQYQRIHQHYQGHLHRANRDVSRCMMSHMI*

LD43096.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG32428-PB 195 CG32428-PB 1..195 1..195 1066 100 Plus
CG32428-PA 195 CG32428-PA 1..195 1..195 1066 100 Plus
CG32428-PC 238 CG32428-PC 1..176 1..176 961 100 Plus