Clone LD43103 Report

Search the DGRC for LD43103

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:431
Well:3
Vector:pOT2
Associated Gene/TranscriptE(var)3-9-RA
Protein status:LD43103.pep: gold
Preliminary Size:2198
Sequenced Size:2118

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11971 2004-10-02 Blastp of sequenced clone
CG11971 2008-04-29 Release 5.5 accounting
CG11971 2008-08-15 Release 5.9 accounting
CG11971 2008-12-18 5.12 accounting

Clone Sequence Records

LD43103.complete Sequence

2118 bp (2118 high quality bases) assembled on 2005-08-25

GenBank Submission: BT016085

> LD43103.complete
CTTTGTGGAACGGATTCCTGTAAAAATTGAATATATGCTAGCGCACCATG
GAGTTCAGTGCGGATCTGAATGGCTTCAATGAGGACTCCATCGAACCCTG
CCGGACTTGCGGAATTTACTTTACCATGGGAATGGACATGGACCAGGCGA
TTGTGAAGCCCATTTTCGGTTCGGATGACGCCGCCGTCGCAGATATGGCG
GAGATTCTCGAGCAAATGAATGATTGGAACATAAAGGTTGCGAGGGAAGA
CGGACGACCGCAGTACATGTGCATCGCTTGCATTGCCGAGTTTCACCGGC
TGATTAAATTCAAGCGCAGCTGTGTGGAGACACAGGAGCAGTTCGGCGAG
CTCGAGTACCAGCGCGAACATAATGGCATCGTTATTAAACGGGAAATTGA
GCCGGAGGAAGAGAAATTCTGCGGATTTATATATCTGGATACCGACGAGG
AGGATAACAGCGACGAGGACGGTAGTAGACGCGTGTGTGCCGTCTTCGAC
ATACCGCATGTGCCCATTAAGGAGGAACACATGGCCCGAGTGCCATTACA
GAACAGTGACAAGTTTCAGCCACCCGAACCCAAAAATTTTGCGTCGCCAG
TCGACTCCAGATTCGACATGATAGACAACGATGCGTTAACGTCCGGCATG
TTAGGACCGTCTATTGAGGATCTCTCCGGGACGGTCGACGATGGCACCGA
AGATGAGGAGGAGGAGGAGGAGGAGATAGTCAGATTTACATACGATGATG
ACAACGATGCGGCAGCCCCGCTTCCGCCCCCGCTTTACTCGCCGGTTGTG
TGTTGTAAGCTATGCTTTTACGAATCCCCCGACCAGGATGCGCATATGGA
GCACATGCGCCGCACCCATCTCCTCAAGGACTGGGAATGCCATATTTGCG
GCAAAAAGTTCACAAATGCCCAAGAATCGCGCATCAAGTTTCACATCAAG
TATCACAAGCTACAGCGGCACGTTAAGTGTCCCGTTTGCGGGTTCATCTG
CAGCTCCAAGGAGACTCTCAAGGAGCACAAGCAGGCAGTGCACGTACGCA
CAAAGTGCACATACTGTGGAAAAACTGTGAAAAACGCCACTCTACACGCA
CATTTGAAAAAGCACTTAGAAGAGGGTGAAGCCGAACTTGCCCAGCAACT
GAAAAAATTGGAGCAGCTTCCAGTTAACCTTCAATCTCAACATTTATCTT
CACTGGAAAGCAGTGTCGCCGAAGTCACCACGGCTTCTGAGGGCTCAAAT
ATTCCTGGGGAATCCACTGTTCCTGAAGATTCTAATGTAACCGAAAACTC
CAGTGTTCCTTCAATAGAGACTTCCAATCATGCGGACATTCAATGTCCAA
TGGGCCCACCTGCAAACGGAGAAGTTCCTGATGTAGCAGATGTAGCTTCA
CCGTCAACCGAGCCAACTGAAAGTGTCACTAAGTGCTCATATTGCAGCGA
CACATTCGAGAAGGCCCAGCAGCTGCAGGCTCATGTGCTGGCCACTCACA
CACAGACAAGAAAGAGGCGTCGCTCTTCAGACAACCAGTCATTAGTGAGA
AAGACCACGCAGGAAATACCTACGTCGCCCATTGCAAAGATAACCAAGAA
GCAAACCATCGAGTCCAAAGAAAGAGTCGTCCTAGAGTCTTCTTCTCAAT
TAGATAGCACTGCCCAGCAGGAGAGCAGGACTTCAGCGACCTCTAATGAC
AGCTCTCCTGTCCAACAGGTGCCAGAAAAAGCGTACATCTCGTGCTACAT
TTGCGGCAGATCCTTTGACTTAAAAATTAAGCTTAACAGACATCTTAAGC
AGCATAAGGGTTAGTATCGTTTCTAGCGTATAGCCATTATTCCATATTAA
TTTCATTTTTCTAAAAATGTAAGAGTATTGTGCATCTTATCATTTTCCAC
TGGCCTGCCAAATGCAAACGTTGAAATTTGTTATTTAAATTTTCTTATTT
TTATATAATTGGTTGGCGAAGTACTTACATTCGAATTTTAATGTTTAATA
AAATAGAAACCATTTTGCATTTGCCTTTTATCCATACAGAGTTGGAAAAA
TGCAAAGCACATTGGTTTTTGTATTGCAAATAAACATGGCCCTTCTGGTA
AAAAAAAAAAAAAAAAAA

LD43103.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
E(var)3-9-RA 2261 E(var)3-9-RA 138..2236 1..2099 10495 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4816536..4817514 2099..1121 4880 99.9 Minus
chr3R 27901430 chr3R 4817681..4818522 1074..233 4195 99.9 Minus
chr3R 27901430 chr3R 4818564..4818803 240..1 1200 100 Minus
chr3R 27901430 chr3R 4817571..4817618 1122..1075 240 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8990645..8991623 2099..1121 4895 100 Minus
3R 32079331 3R 8991790..8992631 1074..233 4210 100 Minus
3R 32079331 3R 8992673..8992912 240..1 1200 100 Minus
3R 32079331 3R 8991680..8991727 1122..1075 240 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8731476..8732454 2099..1121 4895 100 Minus
3R 31820162 3R 8732621..8733462 1074..233 4210 100 Minus
3R 31820162 3R 8733504..8733743 240..1 1200 100 Minus
3R 31820162 3R 8732511..8732558 1122..1075 240 100 Minus
Blast to na_te.dros performed 2019-03-15 18:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 1536..1653 1913..2031 132 60 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 6371..6533 2001..1837 125 57.7 Minus
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 595..671 1996..1921 121 67.1 Minus
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 3220..3377 1862..1704 116 58.5 Minus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 7454..7528 1957..1882 116 66.7 Minus

LD43103.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:36:39 Download gff for LD43103.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4816536..4817512 1123..2099 96 <- Minus
chr3R 4817571..4817618 1075..1122 100 <- Minus
chr3R 4817681..4818518 237..1074 97 <- Minus
chr3R 4818568..4818803 1..236 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:25:42 Download gff for LD43103.complete
Subject Subject Range Query Range Percent Splice Strand
CG11971-RA 1..1767 48..1814 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:53:33 Download gff for LD43103.complete
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 1..1767 48..1814 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:08:09 Download gff for LD43103.complete
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 1..1767 48..1814 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:34:16 Download gff for LD43103.complete
Subject Subject Range Query Range Percent Splice Strand
CG11971-RA 1..1767 48..1814 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:48 Download gff for LD43103.complete
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 1..1767 48..1814 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:28:35 Download gff for LD43103.complete
Subject Subject Range Query Range Percent Splice Strand
CG11971-RA 34..2117 1..2084 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:53:32 Download gff for LD43103.complete
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 34..2117 1..2084 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:08:09 Download gff for LD43103.complete
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 38..2136 1..2099 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:34:16 Download gff for LD43103.complete
Subject Subject Range Query Range Percent Splice Strand
CG11971-RA 34..2117 1..2084 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:48 Download gff for LD43103.complete
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 38..2136 1..2099 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:36:39 Download gff for LD43103.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8990645..8991621 1123..2099 100 <- Minus
3R 8991680..8991727 1075..1122 100 <- Minus
3R 8991790..8992627 237..1074 100 <- Minus
3R 8992677..8992912 1..236 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:36:39 Download gff for LD43103.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8990645..8991621 1123..2099 100 <- Minus
3R 8991680..8991727 1075..1122 100 <- Minus
3R 8991790..8992627 237..1074 100 <- Minus
3R 8992677..8992912 1..236 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:36:39 Download gff for LD43103.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8990645..8991621 1123..2099 100 <- Minus
3R 8991680..8991727 1075..1122 100 <- Minus
3R 8991790..8992627 237..1074 100 <- Minus
3R 8992677..8992912 1..236 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:08:09 Download gff for LD43103.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4816367..4817343 1123..2099 100 <- Minus
arm_3R 4817402..4817449 1075..1122 100 <- Minus
arm_3R 4817512..4818349 237..1074 100 <- Minus
arm_3R 4818399..4818634 1..236 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:12:48 Download gff for LD43103.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8731476..8732452 1123..2099 100 <- Minus
3R 8732511..8732558 1075..1122 100 <- Minus
3R 8732621..8733458 237..1074 100 <- Minus
3R 8733508..8733743 1..236 100   Minus

LD43103.pep Sequence

Translation from 47 to 1813

> LD43103.pep
MEFSADLNGFNEDSIEPCRTCGIYFTMGMDMDQAIVKPIFGSDDAAVADM
AEILEQMNDWNIKVAREDGRPQYMCIACIAEFHRLIKFKRSCVETQEQFG
ELEYQREHNGIVIKREIEPEEEKFCGFIYLDTDEEDNSDEDGSRRVCAVF
DIPHVPIKEEHMARVPLQNSDKFQPPEPKNFASPVDSRFDMIDNDALTSG
MLGPSIEDLSGTVDDGTEDEEEEEEEIVRFTYDDDNDAAAPLPPPLYSPV
VCCKLCFYESPDQDAHMEHMRRTHLLKDWECHICGKKFTNAQESRIKFHI
KYHKLQRHVKCPVCGFICSSKETLKEHKQAVHVRTKCTYCGKTVKNATLH
AHLKKHLEEGEAELAQQLKKLEQLPVNLQSQHLSSLESSVAEVTTASEGS
NIPGESTVPEDSNVTENSSVPSIETSNHADIQCPMGPPANGEVPDVADVA
SPSTEPTESVTKCSYCSDTFEKAQQLQAHVLATHTQTRKRRRSSDNQSLV
RKTTQEIPTSPIAKITKKQTIESKERVVLESSSQLDSTAQQESRTSATSN
DSSPVQQVPEKAYISCYICGRSFDLKIKLNRHLKQHKG*

LD43103.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18438-PA 550 GF18438-PA 1..549 1..587 1474 52.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17405-PA 581 GG17405-PA 1..575 1..588 2409 80.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18227-PA 411 GH18227-PA 1..403 50..480 792 40.4 Plus
Dgri\GH18227-PA 411 GH18227-PA 307..406 463..586 152 32.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
E(var)3-9-PA 588 CG11971-PA 1..588 1..588 3112 100 Plus
CG7386-PA 662 CG7386-PA 323..576 253..499 164 24.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10181-PA 492 GI10181-PA 4..490 5..487 1027 44.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12500-PA 551 GL12500-PA 1..547 1..587 1014 40.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11304-PB 601 GA11304-PB 1..597 1..587 1038 40.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26294-PA 588 GM26294-PA 1..588 1..588 2784 91.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\anon-EST:fe1E9-PA 584 GD20831-PA 1..583 1..587 2788 92.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10882-PA 500 GJ10882-PA 4..497 5..486 997 43.9 Plus
Dvir\GJ10882-PA 500 GJ10882-PA 247..495 309..586 179 28 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13500-PA 513 GK13500-PA 1..378 1..380 985 52.6 Plus
Dwil\GK13500-PA 513 GK13500-PA 373..508 452..586 183 33.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24808-PA 589 GE24808-PA 1..582 1..587 2356 79.7 Plus

LD43103.hyp Sequence

Translation from 47 to 1813

> LD43103.hyp
MEFSADLNGFNEDSIEPCRTCGIYFTMGMDMDQAIVKPIFGSDDAAVADM
AEILEQMNDWNIKVAREDGRPQYMCIACIAEFHRLIKFKRSCVETQEQFG
ELEYQREHNGIVIKREIEPEEEKFCGFIYLDTDEEDNSDEDGSRRVCAVF
DIPHVPIKEEHMARVPLQNSDKFQPPEPKNFASPVDSRFDMIDNDALTSG
MLGPSIEDLSGTVDDGTEDEEEEEEEIVRFTYDDDNDAAAPLPPPLYSPV
VCCKLCFYESPDQDAHMEHMRRTHLLKDWECHICGKKFTNAQESRIKFHI
KYHKLQRHVKCPVCGFICSSKETLKEHKQAVHVRTKCTYCGKTVKNATLH
AHLKKHLEEGEAELAQQLKKLEQLPVNLQSQHLSSLESSVAEVTTASEGS
NIPGESTVPEDSNVTENSSVPSIETSNHADIQCPMGPPANGEVPDVADVA
SPSTEPTESVTKCSYCSDTFEKAQQLQAHVLATHTQTRKRRRSSDNQSLV
RKTTQEIPTSPIAKITKKQTIESKERVVLESSSQLDSTAQQESRTSATSN
DSSPVQQVPEKAYISCYICGRSFDLKIKLNRHLKQHKG*

LD43103.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
E(var)3-9-PA 588 CG11971-PA 1..588 1..588 3112 100 Plus
CG7386-PA 662 CG7386-PA 323..576 253..499 164 24.9 Plus