BDGP Sequence Production Resources |
Search the DGRC for LD43103
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 431 |
Well: | 3 |
Vector: | pOT2 |
Associated Gene/Transcript | E(var)3-9-RA |
Protein status: | LD43103.pep: gold |
Preliminary Size: | 2198 |
Sequenced Size: | 2118 |
Gene | Date | Evidence |
---|---|---|
CG11971 | 2004-10-02 | Blastp of sequenced clone |
CG11971 | 2008-04-29 | Release 5.5 accounting |
CG11971 | 2008-08-15 | Release 5.9 accounting |
CG11971 | 2008-12-18 | 5.12 accounting |
2118 bp (2118 high quality bases) assembled on 2005-08-25
GenBank Submission: BT016085
> LD43103.complete CTTTGTGGAACGGATTCCTGTAAAAATTGAATATATGCTAGCGCACCATG GAGTTCAGTGCGGATCTGAATGGCTTCAATGAGGACTCCATCGAACCCTG CCGGACTTGCGGAATTTACTTTACCATGGGAATGGACATGGACCAGGCGA TTGTGAAGCCCATTTTCGGTTCGGATGACGCCGCCGTCGCAGATATGGCG GAGATTCTCGAGCAAATGAATGATTGGAACATAAAGGTTGCGAGGGAAGA CGGACGACCGCAGTACATGTGCATCGCTTGCATTGCCGAGTTTCACCGGC TGATTAAATTCAAGCGCAGCTGTGTGGAGACACAGGAGCAGTTCGGCGAG CTCGAGTACCAGCGCGAACATAATGGCATCGTTATTAAACGGGAAATTGA GCCGGAGGAAGAGAAATTCTGCGGATTTATATATCTGGATACCGACGAGG AGGATAACAGCGACGAGGACGGTAGTAGACGCGTGTGTGCCGTCTTCGAC ATACCGCATGTGCCCATTAAGGAGGAACACATGGCCCGAGTGCCATTACA GAACAGTGACAAGTTTCAGCCACCCGAACCCAAAAATTTTGCGTCGCCAG TCGACTCCAGATTCGACATGATAGACAACGATGCGTTAACGTCCGGCATG TTAGGACCGTCTATTGAGGATCTCTCCGGGACGGTCGACGATGGCACCGA AGATGAGGAGGAGGAGGAGGAGGAGATAGTCAGATTTACATACGATGATG ACAACGATGCGGCAGCCCCGCTTCCGCCCCCGCTTTACTCGCCGGTTGTG TGTTGTAAGCTATGCTTTTACGAATCCCCCGACCAGGATGCGCATATGGA GCACATGCGCCGCACCCATCTCCTCAAGGACTGGGAATGCCATATTTGCG GCAAAAAGTTCACAAATGCCCAAGAATCGCGCATCAAGTTTCACATCAAG TATCACAAGCTACAGCGGCACGTTAAGTGTCCCGTTTGCGGGTTCATCTG CAGCTCCAAGGAGACTCTCAAGGAGCACAAGCAGGCAGTGCACGTACGCA CAAAGTGCACATACTGTGGAAAAACTGTGAAAAACGCCACTCTACACGCA CATTTGAAAAAGCACTTAGAAGAGGGTGAAGCCGAACTTGCCCAGCAACT GAAAAAATTGGAGCAGCTTCCAGTTAACCTTCAATCTCAACATTTATCTT CACTGGAAAGCAGTGTCGCCGAAGTCACCACGGCTTCTGAGGGCTCAAAT ATTCCTGGGGAATCCACTGTTCCTGAAGATTCTAATGTAACCGAAAACTC CAGTGTTCCTTCAATAGAGACTTCCAATCATGCGGACATTCAATGTCCAA TGGGCCCACCTGCAAACGGAGAAGTTCCTGATGTAGCAGATGTAGCTTCA CCGTCAACCGAGCCAACTGAAAGTGTCACTAAGTGCTCATATTGCAGCGA CACATTCGAGAAGGCCCAGCAGCTGCAGGCTCATGTGCTGGCCACTCACA CACAGACAAGAAAGAGGCGTCGCTCTTCAGACAACCAGTCATTAGTGAGA AAGACCACGCAGGAAATACCTACGTCGCCCATTGCAAAGATAACCAAGAA GCAAACCATCGAGTCCAAAGAAAGAGTCGTCCTAGAGTCTTCTTCTCAAT TAGATAGCACTGCCCAGCAGGAGAGCAGGACTTCAGCGACCTCTAATGAC AGCTCTCCTGTCCAACAGGTGCCAGAAAAAGCGTACATCTCGTGCTACAT TTGCGGCAGATCCTTTGACTTAAAAATTAAGCTTAACAGACATCTTAAGC AGCATAAGGGTTAGTATCGTTTCTAGCGTATAGCCATTATTCCATATTAA TTTCATTTTTCTAAAAATGTAAGAGTATTGTGCATCTTATCATTTTCCAC TGGCCTGCCAAATGCAAACGTTGAAATTTGTTATTTAAATTTTCTTATTT TTATATAATTGGTTGGCGAAGTACTTACATTCGAATTTTAATGTTTAATA AAATAGAAACCATTTTGCATTTGCCTTTTATCCATACAGAGTTGGAAAAA TGCAAAGCACATTGGTTTTTGTATTGCAAATAAACATGGCCCTTCTGGTA AAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
E(var)3-9-RA | 2261 | E(var)3-9-RA | 138..2236 | 1..2099 | 10495 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 4816536..4817514 | 2099..1121 | 4880 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 4817681..4818522 | 1074..233 | 4195 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 4818564..4818803 | 240..1 | 1200 | 100 | Minus |
chr3R | 27901430 | chr3R | 4817571..4817618 | 1122..1075 | 240 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 8990645..8991623 | 2099..1121 | 4895 | 100 | Minus |
3R | 32079331 | 3R | 8991790..8992631 | 1074..233 | 4210 | 100 | Minus |
3R | 32079331 | 3R | 8992673..8992912 | 240..1 | 1200 | 100 | Minus |
3R | 32079331 | 3R | 8991680..8991727 | 1122..1075 | 240 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 8731476..8732454 | 2099..1121 | 4895 | 100 | Minus |
3R | 31820162 | 3R | 8732621..8733462 | 1074..233 | 4210 | 100 | Minus |
3R | 31820162 | 3R | 8733504..8733743 | 240..1 | 1200 | 100 | Minus |
3R | 31820162 | 3R | 8732511..8732558 | 1122..1075 | 240 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 1536..1653 | 1913..2031 | 132 | 60 | Plus |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 6371..6533 | 2001..1837 | 125 | 57.7 | Minus |
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 595..671 | 1996..1921 | 121 | 67.1 | Minus |
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 3220..3377 | 1862..1704 | 116 | 58.5 | Minus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 7454..7528 | 1957..1882 | 116 | 66.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4816536..4817512 | 1123..2099 | 96 | <- | Minus |
chr3R | 4817571..4817618 | 1075..1122 | 100 | <- | Minus |
chr3R | 4817681..4818518 | 237..1074 | 97 | <- | Minus |
chr3R | 4818568..4818803 | 1..236 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11971-RA | 1..1767 | 48..1814 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
E(var)3-9-RA | 1..1767 | 48..1814 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
E(var)3-9-RA | 1..1767 | 48..1814 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11971-RA | 1..1767 | 48..1814 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
E(var)3-9-RA | 1..1767 | 48..1814 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11971-RA | 34..2117 | 1..2084 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
E(var)3-9-RA | 34..2117 | 1..2084 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
E(var)3-9-RA | 38..2136 | 1..2099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11971-RA | 34..2117 | 1..2084 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
E(var)3-9-RA | 38..2136 | 1..2099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8990645..8991621 | 1123..2099 | 100 | <- | Minus |
3R | 8991680..8991727 | 1075..1122 | 100 | <- | Minus |
3R | 8991790..8992627 | 237..1074 | 100 | <- | Minus |
3R | 8992677..8992912 | 1..236 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8990645..8991621 | 1123..2099 | 100 | <- | Minus |
3R | 8991680..8991727 | 1075..1122 | 100 | <- | Minus |
3R | 8991790..8992627 | 237..1074 | 100 | <- | Minus |
3R | 8992677..8992912 | 1..236 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8990645..8991621 | 1123..2099 | 100 | <- | Minus |
3R | 8991680..8991727 | 1075..1122 | 100 | <- | Minus |
3R | 8991790..8992627 | 237..1074 | 100 | <- | Minus |
3R | 8992677..8992912 | 1..236 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4816367..4817343 | 1123..2099 | 100 | <- | Minus |
arm_3R | 4817402..4817449 | 1075..1122 | 100 | <- | Minus |
arm_3R | 4817512..4818349 | 237..1074 | 100 | <- | Minus |
arm_3R | 4818399..4818634 | 1..236 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8731476..8732452 | 1123..2099 | 100 | <- | Minus |
3R | 8732511..8732558 | 1075..1122 | 100 | <- | Minus |
3R | 8732621..8733458 | 237..1074 | 100 | <- | Minus |
3R | 8733508..8733743 | 1..236 | 100 | Minus |
Translation from 47 to 1813
> LD43103.pep MEFSADLNGFNEDSIEPCRTCGIYFTMGMDMDQAIVKPIFGSDDAAVADM AEILEQMNDWNIKVAREDGRPQYMCIACIAEFHRLIKFKRSCVETQEQFG ELEYQREHNGIVIKREIEPEEEKFCGFIYLDTDEEDNSDEDGSRRVCAVF DIPHVPIKEEHMARVPLQNSDKFQPPEPKNFASPVDSRFDMIDNDALTSG MLGPSIEDLSGTVDDGTEDEEEEEEEIVRFTYDDDNDAAAPLPPPLYSPV VCCKLCFYESPDQDAHMEHMRRTHLLKDWECHICGKKFTNAQESRIKFHI KYHKLQRHVKCPVCGFICSSKETLKEHKQAVHVRTKCTYCGKTVKNATLH AHLKKHLEEGEAELAQQLKKLEQLPVNLQSQHLSSLESSVAEVTTASEGS NIPGESTVPEDSNVTENSSVPSIETSNHADIQCPMGPPANGEVPDVADVA SPSTEPTESVTKCSYCSDTFEKAQQLQAHVLATHTQTRKRRRSSDNQSLV RKTTQEIPTSPIAKITKKQTIESKERVVLESSSQLDSTAQQESRTSATSN DSSPVQQVPEKAYISCYICGRSFDLKIKLNRHLKQHKG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18438-PA | 550 | GF18438-PA | 1..549 | 1..587 | 1474 | 52.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17405-PA | 581 | GG17405-PA | 1..575 | 1..588 | 2409 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18227-PA | 411 | GH18227-PA | 1..403 | 50..480 | 792 | 40.4 | Plus |
Dgri\GH18227-PA | 411 | GH18227-PA | 307..406 | 463..586 | 152 | 32.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
E(var)3-9-PA | 588 | CG11971-PA | 1..588 | 1..588 | 3112 | 100 | Plus |
CG7386-PA | 662 | CG7386-PA | 323..576 | 253..499 | 164 | 24.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10181-PA | 492 | GI10181-PA | 4..490 | 5..487 | 1027 | 44.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12500-PA | 551 | GL12500-PA | 1..547 | 1..587 | 1014 | 40.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11304-PB | 601 | GA11304-PB | 1..597 | 1..587 | 1038 | 40.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26294-PA | 588 | GM26294-PA | 1..588 | 1..588 | 2784 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\anon-EST:fe1E9-PA | 584 | GD20831-PA | 1..583 | 1..587 | 2788 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10882-PA | 500 | GJ10882-PA | 4..497 | 5..486 | 997 | 43.9 | Plus |
Dvir\GJ10882-PA | 500 | GJ10882-PA | 247..495 | 309..586 | 179 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13500-PA | 513 | GK13500-PA | 1..378 | 1..380 | 985 | 52.6 | Plus |
Dwil\GK13500-PA | 513 | GK13500-PA | 373..508 | 452..586 | 183 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24808-PA | 589 | GE24808-PA | 1..582 | 1..587 | 2356 | 79.7 | Plus |
Translation from 47 to 1813
> LD43103.hyp MEFSADLNGFNEDSIEPCRTCGIYFTMGMDMDQAIVKPIFGSDDAAVADM AEILEQMNDWNIKVAREDGRPQYMCIACIAEFHRLIKFKRSCVETQEQFG ELEYQREHNGIVIKREIEPEEEKFCGFIYLDTDEEDNSDEDGSRRVCAVF DIPHVPIKEEHMARVPLQNSDKFQPPEPKNFASPVDSRFDMIDNDALTSG MLGPSIEDLSGTVDDGTEDEEEEEEEIVRFTYDDDNDAAAPLPPPLYSPV VCCKLCFYESPDQDAHMEHMRRTHLLKDWECHICGKKFTNAQESRIKFHI KYHKLQRHVKCPVCGFICSSKETLKEHKQAVHVRTKCTYCGKTVKNATLH AHLKKHLEEGEAELAQQLKKLEQLPVNLQSQHLSSLESSVAEVTTASEGS NIPGESTVPEDSNVTENSSVPSIETSNHADIQCPMGPPANGEVPDVADVA SPSTEPTESVTKCSYCSDTFEKAQQLQAHVLATHTQTRKRRRSSDNQSLV RKTTQEIPTSPIAKITKKQTIESKERVVLESSSQLDSTAQQESRTSATSN DSSPVQQVPEKAYISCYICGRSFDLKIKLNRHLKQHKG*