BDGP Sequence Production Resources |
Search the DGRC for LD43104
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 431 |
Well: | 4 |
Vector: | pOT2 |
Associated Gene/Transcript | Sam-S-RG |
Protein status: | LD43104.pep: gold |
Sequenced Size: | 1974 |
Gene | Date | Evidence |
---|---|---|
M(2)21AB-RG | 2009-06-22 | Replacement based on scoring |
1974 bp assembled on 2009-09-23
GenBank Submission: BT099838.1
> LD43104.complete TTTGACAACAGCTGTTGATAAGCCGAGCGACCTTTTATACTACGCATTGA TTACTTTTACTATTCTATACTATTTTATTTTATAATGCTAATTAAGTCGG CTTGGCAAGCTAGCCCTAGACAATCTAGCCCTATACAATCGTGATGATAA GCGCCGAGTGCCATTCAGAAGAATACACCCCAAATGACAAAATGTGCGAC CAAATCAGCGACGCTATCTTGGATGCCCATCTGAAGCAGGATCCAAACGC GAAGGTGGCGTGTGAAACCGTCGCCAAGACGGGCATGATTCTGCTGTGCG GCGAGATCACGTCTAAGGCTGTGGTCGACTACCAGAAGGTTGTTCGTGAG ACAGTGCAGCACATTGGTTATGATGACTCCTCCAAGGGTTTCGATTGGAA GACACTTAACCTGCTTGTAGCCATCGAGCAACAGTCGCCCAACATTGCCA ACGGCGTTCATATCAACCGCGAAGAAGAAGACGTCGGCGCTGGTGACCAG GGTATCATGTTTGGATATGCCACCGACGAAACCGAGGAATGTATGCCCCT AACCGTCGTTTTGGCTCACAAACTAAACGAAAAGATTGCTGAGCTGCGTC GCTCAGATGTGTTCTGGTGGGCTCGCCCCGATTCCAAAACACAAGTAACC TGCGAGTACCTCTTCAATCAGGGATCAGCAGTTCCCAAGCGTGTCCACAC TATTGTAGTGTCCATGCAGCATTCTGAAAAGATATCGTTAGAAACCCTGC GCTCGGAAGTAATGGAGAAAGTTGTTAAAGTAGTCATTCCCGCCAAATAC ATTGATGCCAACACCATTGTCCACATCAATCCTTGTGGGCTTTTTGTAAT CGGTGGACCAATGGGTGACGCTGGGCTTACAGGAAGAAAAATCATTGTAG ATACTTACGGAGGCTGGGGCGCCCACGGCGGCGGTGCATTCTCTGGCAAG GACTTCACCAAGGTTGACAGATCAGCTGCATATGCAGCACGCTGGGTGGC CAAATCACTGGTTAAGGCCGGTCTCTGCAAGCGCTGCCTTGTCCAAGTGT CCTACGCCATAGGTCTTGCTGAGCCTCTCTCCATAACTGTGTTCGACTAC GGAACTTCTCACAAGTCACAAAAAGAACTTCTGGATATCATCCGTCGAAA CTTTGACCTCAGGCCCGGCAAGATTGTCAAGGACCTAAACCTGCGCCAGC CGATATACCAGCGAACAAGCACTTATGGACACTTCGGTCGCGCGGGCTTC TCGTGGGAGGAGGCCAAGCCTCTGGAGATTGACAACTGACTAGACGCTGA AGCGTTGCAACCGCAGTCACCATATGCTAAAAGGTCGAAGCTATCCTTAT ATTCATCAGCGTCAAAATTAACAGATACCCAAGCACCAACGTAATTTTTA GTGTCGTTTTTAAAGCCTAAAGTCAGAGGAGAAGGCGGCATAGGCTTGCC AACTCTTATGGGCTTTCTTCTCTAACTTATGCTGTGCTCTTCGCTATATA ATTTAAACCATTCTGATGTGTGTAGTCTTCTCACACGGAACTAGTTTTAG TCGTCTTAATACCCGCATATATACCTAATAGAGAGCTCCAAAAGAATTGA TGAGCTTTAGTTATGCATATACATAGTATAGTGTCGGTCAGTTCAGTAAA AATTAAAGCAGTAGTTAGTACCTCCTTCAATTATCATGCAACTTAATTAT GTTGGTGTCTATGGAAATTGTATAAAACAATTAAATCCGTTGCCTAGAAA TTATGCAACATTCTCATGTCCCCATTGTAAACTTATTTTTGTCTCTTTTA ACATTTCTATTTGTTGTATGCGTTGTATATGTTAAACCTAAAGTTTTAAA CAACTCGATTGTATGTACATTACACTCTGTCTTTGTATTTTCTGTAACCA ACCATAAGATAATGTATTTTCCTTTACAAAAATATATTAAAGATAAATAT GAAAAGTAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
M(2)21AB-RG | 2223 | M(2)21AB-RG | 45..2002 | 1..1958 | 9790 | 100 | Plus |
M(2)21AB-RC | 2637 | M(2)21AB-RC | 563..2335 | 186..1958 | 8865 | 100 | Plus |
M(2)21AB-RB | 2407 | M(2)21AB-RB | 687..2186 | 459..1958 | 7335 | 99.2 | Plus |
M(2)21AB-RB | 2407 | M(2)21AB-RB | 301..616 | 186..501 | 1580 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 113471..114247 | 1181..1957 | 3870 | 99.9 | Plus |
chr2L | 23010047 | chr2L | 112724..113407 | 498..1181 | 3420 | 100 | Plus |
chr2L | 23010047 | chr2L | 109645..109830 | 1..186 | 930 | 100 | Plus |
chr2L | 23010047 | chr2L | 110791..110916 | 264..389 | 630 | 100 | Plus |
chr2L | 23010047 | chr2L | 111041..111155 | 387..501 | 575 | 100 | Plus |
chr2L | 23010047 | chr2L | 110442..110520 | 186..264 | 395 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 113434..114211 | 1181..1958 | 3890 | 100 | Plus |
2L | 23513712 | 2L | 112687..113370 | 498..1181 | 3420 | 100 | Plus |
2L | 23513712 | 2L | 109608..109793 | 1..186 | 930 | 100 | Plus |
2L | 23513712 | 2L | 110754..110879 | 264..389 | 630 | 100 | Plus |
2L | 23513712 | 2L | 111004..111118 | 387..501 | 575 | 100 | Plus |
2L | 23513712 | 2L | 110405..110483 | 186..264 | 395 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 113434..114211 | 1181..1958 | 3890 | 100 | Plus |
2L | 23513712 | 2L | 112687..113370 | 498..1181 | 3420 | 100 | Plus |
2L | 23513712 | 2L | 109608..109793 | 1..186 | 930 | 100 | Plus |
2L | 23513712 | 2L | 110754..110879 | 264..389 | 630 | 100 | Plus |
2L | 23513712 | 2L | 111004..111118 | 387..501 | 575 | 100 | Plus |
2L | 23513712 | 2L | 110405..110483 | 186..264 | 395 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
blood | 7410 | blood BLOOD 7410bp | 6910..6963 | 46..99 | 117 | 68.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 109645..109830 | 1..186 | 100 | -> | Plus |
chr2L | 110443..110520 | 187..264 | 100 | -> | Plus |
chr2L | 110792..110914 | 265..387 | 100 | -> | Plus |
chr2L | 111042..111154 | 388..500 | 100 | -> | Plus |
chr2L | 112727..113406 | 501..1180 | 100 | -> | Plus |
chr2L | 113471..114247 | 1181..1957 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
M(2)21AB-RG | 1..1146 | 144..1289 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sam-S-RG | 1..1146 | 144..1289 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sam-S-RG | 1..1146 | 144..1289 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sam-S-RG | 1..1146 | 144..1289 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
M(2)21AB-RG | 1..1957 | 1..1957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sam-S-RG | 1..1957 | 1..1957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sam-S-RG | 15..1971 | 1..1957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sam-S-RG | 15..1971 | 1..1957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 109608..109793 | 1..186 | 100 | -> | Plus |
2L | 110406..110483 | 187..264 | 100 | -> | Plus |
2L | 110755..110877 | 265..387 | 100 | -> | Plus |
2L | 111005..111117 | 388..500 | 100 | -> | Plus |
2L | 112690..113369 | 501..1180 | 100 | -> | Plus |
2L | 113434..114210 | 1181..1957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 109608..109793 | 1..186 | 100 | -> | Plus |
2L | 110406..110483 | 187..264 | 100 | -> | Plus |
2L | 110755..110877 | 265..387 | 100 | -> | Plus |
2L | 111005..111117 | 388..500 | 100 | -> | Plus |
2L | 112690..113369 | 501..1180 | 100 | -> | Plus |
2L | 113434..114210 | 1181..1957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 109608..109793 | 1..186 | 100 | -> | Plus |
2L | 110406..110483 | 187..264 | 100 | -> | Plus |
2L | 110755..110877 | 265..387 | 100 | -> | Plus |
2L | 111005..111117 | 388..500 | 100 | -> | Plus |
2L | 112690..113369 | 501..1180 | 100 | -> | Plus |
2L | 113434..114210 | 1181..1957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 113434..114210 | 1181..1957 | 100 | Plus | |
arm_2L | 109608..109793 | 1..186 | 100 | -> | Plus |
arm_2L | 110406..110483 | 187..264 | 100 | -> | Plus |
arm_2L | 110755..110877 | 265..387 | 100 | -> | Plus |
arm_2L | 111005..111117 | 388..500 | 100 | -> | Plus |
arm_2L | 112690..113369 | 501..1180 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 112690..113369 | 501..1180 | 100 | -> | Plus |
2L | 113434..114210 | 1181..1957 | 100 | Plus | |
2L | 109608..109793 | 1..186 | 100 | -> | Plus |
2L | 110406..110483 | 187..264 | 100 | -> | Plus |
2L | 110755..110877 | 265..387 | 100 | -> | Plus |
2L | 111005..111117 | 388..500 | 100 | -> | Plus |
Translation from 143 to 1288
> LD43104.hyp MISAECHSEEYTPNDKMCDQISDAILDAHLKQDPNAKVACETVAKTGMIL LCGEITSKAVVDYQKVVRETVQHIGYDDSSKGFDWKTLNLLVAIEQQSPN IANGVHINREEEDVGAGDQGIMFGYATDETEECMPLTVVLAHKLNEKIAE LRRSDVFWWARPDSKTQVTCEYLFNQGSAVPKRVHTIVVSMQHSEKISLE TLRSEVMEKVVKVVIPAKYIDANTIVHINPCGLFVIGGPMGDAGLTGRKI IVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCKRCLV QVSYAIGLAEPLSITVFDYGTSHKSQKELLDIIRRNFDLRPGKIVKDLNL RQPIYQRTSTYGHFGRAGFSWEEAKPLEIDN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sam-S-PG | 381 | CG2674-PG | 1..381 | 1..381 | 1998 | 100 | Plus |
Sam-S-PJ | 408 | CG2674-PJ | 42..408 | 15..381 | 1920 | 100 | Plus |
Sam-S-PC | 408 | CG2674-PC | 42..408 | 15..381 | 1920 | 100 | Plus |
Sam-S-PE | 408 | CG2674-PE | 42..408 | 15..381 | 1868 | 96.7 | Plus |
Sam-S-PA | 408 | CG2674-PA | 42..408 | 15..381 | 1868 | 96.7 | Plus |
Translation from 143 to 1288
> LD43104.pep MISAECHSEEYTPNDKMCDQISDAILDAHLKQDPNAKVACETVAKTGMIL LCGEITSKAVVDYQKVVRETVQHIGYDDSSKGFDWKTLNLLVAIEQQSPN IANGVHINREEEDVGAGDQGIMFGYATDETEECMPLTVVLAHKLNEKIAE LRRSDVFWWARPDSKTQVTCEYLFNQGSAVPKRVHTIVVSMQHSEKISLE TLRSEVMEKVVKVVIPAKYIDANTIVHINPCGLFVIGGPMGDAGLTGRKI IVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCKRCLV QVSYAIGLAEPLSITVFDYGTSHKSQKELLDIIRRNFDLRPGKIVKDLNL RQPIYQRTSTYGHFGRAGFSWEEAKPLEIDN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14863-PA | 445 | GF14863-PA | 45..445 | 15..380 | 1762 | 89.8 | Plus |
Dana\GF16137-PA | 147 | GF16137-PA | 1..147 | 199..380 | 669 | 76.4 | Plus |
Dana\GF16127-PA | 383 | GF16127-PA | 280..383 | 41..145 | 464 | 84.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24695-PA | 408 | GG24695-PA | 42..408 | 15..381 | 1959 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10060-PA | 448 | GH10060-PA | 48..448 | 15..380 | 1784 | 87.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sam-S-PG | 381 | CG2674-PG | 1..381 | 1..381 | 1998 | 100 | Plus |
Sam-S-PJ | 408 | CG2674-PJ | 42..408 | 15..381 | 1920 | 100 | Plus |
Sam-S-PC | 408 | CG2674-PC | 42..408 | 15..381 | 1920 | 100 | Plus |
Sam-S-PE | 408 | CG2674-PE | 42..408 | 15..381 | 1868 | 96.7 | Plus |
Sam-S-PA | 408 | CG2674-PA | 42..408 | 15..381 | 1868 | 96.7 | Plus |
Sam-S-PI | 408 | CG2674-PI | 42..408 | 15..381 | 1868 | 96.7 | Plus |
Sam-S-PF | 408 | CG2674-PF | 42..408 | 15..381 | 1868 | 96.7 | Plus |
Sam-S-PH | 408 | CG2674-PH | 42..408 | 15..381 | 1868 | 96.7 | Plus |
Sam-S-PD | 408 | CG2674-PD | 42..408 | 15..381 | 1868 | 96.7 | Plus |
Sam-S-PB | 200 | CG2674-PB | 42..146 | 15..119 | 545 | 100 | Plus |
Sam-S-PL | 138 | CG2674-PL | 42..110 | 15..83 | 354 | 98.6 | Plus |
Sam-S-PK | 115 | CG2674-PK | 42..109 | 15..82 | 351 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16450-PA | 421 | GI16450-PA | 47..421 | 15..380 | 1620 | 81 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16618-PA | 407 | GL16618-PA | 42..407 | 15..380 | 1748 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15421-PA | 407 | GA15421-PA | 42..407 | 15..380 | 1920 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16715-PA | 408 | GM16715-PA | 42..408 | 15..381 | 1963 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23001-PA | 381 | GD23001-PA | 1..381 | 1..381 | 2045 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16217-PA | 412 | GJ16217-PA | 47..412 | 15..380 | 1731 | 93.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24606-PA | 447 | GK24606-PA | 47..447 | 15..380 | 1751 | 88.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16582-PA | 464 | GE16582-PA | 42..464 | 15..381 | 1684 | 82.3 | Plus |