Clone LD43175 Report

Search the DGRC for LD43175

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:431
Well:75
Vector:pOT2
Associated Gene/Transcriptyellow-b-RA
Protein status:LD43175.pep: gold
Preliminary Size:1876
Sequenced Size:1644

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17914 2001-01-01 Release 2 assignment
CG17914 2002-05-30 Blastp of sequenced clone
CG17914 2003-01-01 Sim4 clustering to Release 3
yellow-b 2008-04-29 Release 5.5 accounting
yellow-b 2008-08-15 Release 5.9 accounting
yellow-b 2008-12-18 5.12 accounting

Clone Sequence Records

LD43175.complete Sequence

1644 bp (1644 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118575

> LD43175.complete
TGCTGCTCTTTGGTTGATCATAAGAAGTGAATTTATTGGAGACATGCTGC
GATTCAGATTAGGCCTGCTACTTCTGTGGGCGGTCTCTGCCCTGGCGAAC
GACAATCTTCGCGTAGCGTACGAGTGGCGGGAAATGGACTTCAAGTACGC
CAATCCAGACCAAAGATGGTCGGCCATCGAGCGGGGCGAGTTCAAGCCGG
CCAATGTGATACCCTTTGGCCTGGAGGTTGCCGGCCACCGACTCTTTGTC
ACCCTGCCCAGATGGAGGGACGGAGTGCCGGCCTCGTTGGCCTACCTTGA
TCTTAATGATACCTCCAGCAAGGGTCCAGCCTTGAAGCCATTCCCCAGCT
GGCAGGCTCACAATCTCCAGGAAGCCGAACCGGAATTGGTTTCTCCATTC
CGCGTGCGAGCCGATAGATGCGGACGCCTGTGGGTGCTCGACTCTAGGAT
CTCCGGAGTCCTGGAGCAGACCAAGATCTATGGAGCAGCCCAGCTGCTGG
TCTACGATCTGCACAATGATGATTTGTTGAGACGACACGTTTTGCCCGCC
GGTCAGTTGAAGCAGGGATCTTTACTGGCCAATCTGGCGGTGGAGGACTC
TGACTGTGAGAATACCTTTGCCTACGCAGCCGATTTGGGCAGTCCCGGCT
TGGTGGTTTACTCATGGAAGGATGAGGAATCGTGGCGTGTGCAGCATCAC
TTCTTCCACCCAGATCCAATGGCCGGTAACTTCAGCATCAATGGCATTGA
GTTTCAATGGGATGATGGCCTATACGGACTGGCTCTATCGAAGCCCCTGG
AAACGGGCTATGCCACATTGTACTTCCATCCCCTCTGCTCCACTACGGAA
TTCTCGGTGGATACATCGATATTGCGTAACAAGACCCTGGCCACTTCGCC
GATGATTTATCGAGAATTCAAGGTGCTGGGCTCCAGAGGACCGAACACCC
AGGCTGGAGCCGAGTTCTTGGATCCGGATACCGGAGTCCTATTCTACGCC
CTGCCCAATCTGAACGAAGTCGCCTGCTGGCGCACTGCCACAGACTTTAG
TCACAGTTCCCAGAGCCGCATCCACATGAACAATGATACCTTGGTGTTCC
CCAGTGACATCAAGGTTGATGATCAGAAACGTCTATGGGTCCTATCCAAT
CAGCTACCCGTCTTCATCTACGATGAACTGTACGCCGGCTCAATAAACTT
CCGTATCCTGACTGCCAGTGTTAAGGAGGCCATTGAGAATACAGCCTGTG
AAATTAGAACTTCCCCTCTGCCAGATGTAATCAACAAACTGGGGGATATT
CTCAATACTAACATCAAACTGAAGTCCAATTCGGCTTCTTCCCTTAGGAA
CCTCAGCTCCCTTATGCTGATTGCCTTATGTTTGCTGATGAGCTTTAGAA
TCTAGATTCCCGCAGCGGTACAAAAGTATCTTGCGCACTTGCGAACGAAA
ATGTTTTATGTTTTTCAAGAACAGAGAACTTGAAAAATTTCTGTAATTTT
AGCATTTTCACTGATTTCTTAAACGTACGAAATATTTTTATTTGAGTGCA
ATTGTAATCTGTTAAGATGTAGGCTTAGAAAACTTAAACGTTGTACGTGA
AGTTGATTAAATGTAAGAAGTGTAAAAAAAAAAAAAAAAAAAAA

LD43175.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-b-RA 1707 yellow-b-RA 56..1679 1..1624 8120 100 Plus
yellow-b.a 1665 yellow-b.a 70..1665 28..1623 7980 100 Plus
yellow-b.b 1665 yellow-b.b 70..1665 28..1623 7980 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 16755725..16757040 308..1623 6400 99.1 Plus
chr2L 23010047 chr2L 16754431..16754713 26..308 1415 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16756968..16758284 308..1624 6585 100 Plus
2L 23513712 2L 16755681..16755963 26..308 1415 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16756968..16758284 308..1624 6585 100 Plus
2L 23513712 2L 16755681..16755963 26..308 1415 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:35:15 has no hits.

LD43175.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:36:41 Download gff for LD43175.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 16753119..16753145 1..27 100 -> Plus
chr2L 16754433..16754713 28..308 100 -> Plus
chr2L 16755726..16757040 309..1623 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:25:49 Download gff for LD43175.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 1..1362 44..1405 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:36:22 Download gff for LD43175.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 1..1362 44..1405 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:08:13 Download gff for LD43175.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 1..1362 44..1405 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:27:58 Download gff for LD43175.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 1..1362 44..1405 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:51 Download gff for LD43175.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 1..1362 44..1405 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:08:20 Download gff for LD43175.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 37..1659 1..1623 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:36:21 Download gff for LD43175.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 37..1659 1..1623 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:08:13 Download gff for LD43175.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 37..1659 1..1623 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:27:58 Download gff for LD43175.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 37..1659 1..1623 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:51 Download gff for LD43175.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 37..1659 1..1623 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:36:41 Download gff for LD43175.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16754372..16754398 1..27 100 -> Plus
2L 16755683..16755963 28..308 100 -> Plus
2L 16756969..16758283 309..1623 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:36:41 Download gff for LD43175.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16754372..16754398 1..27 100 -> Plus
2L 16755683..16755963 28..308 100 -> Plus
2L 16756969..16758283 309..1623 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:36:41 Download gff for LD43175.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16754372..16754398 1..27 100 -> Plus
2L 16755683..16755963 28..308 100 -> Plus
2L 16756969..16758283 309..1623 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:08:13 Download gff for LD43175.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16754372..16754398 1..27 100 -> Plus
arm_2L 16755683..16755963 28..308 100 -> Plus
arm_2L 16756969..16758283 309..1623 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:00:28 Download gff for LD43175.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16755683..16755963 28..308 100 -> Plus
2L 16756969..16758283 309..1623 100   Plus
2L 16754372..16754398 1..27 100 -> Plus

LD43175.hyp Sequence

Translation from 0 to 1404

> LD43175.hyp
AALWLIIRSEFIGDMLRFRLGLLLLWAVSALANDNLRVAYEWREMDFKYA
NPDQRWSAIERGEFKPANVIPFGLEVAGHRLFVTLPRWRDGVPASLAYLD
LNDTSSKGPALKPFPSWQAHNLQEAEPELVSPFRVRADRCGRLWVLDSRI
SGVLEQTKIYGAAQLLVYDLHNDDLLRRHVLPAGQLKQGSLLANLAVEDS
DCENTFAYAADLGSPGLVVYSWKDEESWRVQHHFFHPDPMAGNFSINGIE
FQWDDGLYGLALSKPLETGYATLYFHPLCSTTEFSVDTSILRNKTLATSP
MIYREFKVLGSRGPNTQAGAEFLDPDTGVLFYALPNLNEVACWRTATDFS
HSSQSRIHMNNDTLVFPSDIKVDDQKRLWVLSNQLPVFIYDELYAGSINF
RILTASVKEAIENTACEIRTSPLPDVINKLGDILNTNIKLKSNSASSLRN
LSSLMLIALCLLMSFRI*

LD43175.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-b-PB 453 CG17914-PB 1..453 15..467 2379 100 Plus
yellow-b-PA 453 CG17914-PA 1..453 15..467 2379 100 Plus
yellow-c-PB 438 CG4182-PB 6..438 15..418 840 37.6 Plus
yellow-c-PA 438 CG4182-PA 6..438 15..418 840 37.6 Plus
y-PA 541 CG3757-PA 25..410 36..421 772 37.5 Plus

LD43175.pep Sequence

Translation from 43 to 1404

> LD43175.pep
MLRFRLGLLLLWAVSALANDNLRVAYEWREMDFKYANPDQRWSAIERGEF
KPANVIPFGLEVAGHRLFVTLPRWRDGVPASLAYLDLNDTSSKGPALKPF
PSWQAHNLQEAEPELVSPFRVRADRCGRLWVLDSRISGVLEQTKIYGAAQ
LLVYDLHNDDLLRRHVLPAGQLKQGSLLANLAVEDSDCENTFAYAADLGS
PGLVVYSWKDEESWRVQHHFFHPDPMAGNFSINGIEFQWDDGLYGLALSK
PLETGYATLYFHPLCSTTEFSVDTSILRNKTLATSPMIYREFKVLGSRGP
NTQAGAEFLDPDTGVLFYALPNLNEVACWRTATDFSHSSQSRIHMNNDTL
VFPSDIKVDDQKRLWVLSNQLPVFIYDELYAGSINFRILTASVKEAIENT
ACEIRTSPLPDVINKLGDILNTNIKLKSNSASSLRNLSSLMLIALCLLMS
FRI*

LD43175.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15359-PA 453 GF15359-PA 19..453 19..453 2040 85.5 Plus
Dana\GF14904-PA 438 GF14904-PA 11..438 6..404 842 37.3 Plus
Dana\y-PA 546 GF21448-PA 27..412 22..407 778 37.8 Plus
Dana\GF18090-PA 452 GF18090-PA 96..452 50..403 622 34.7 Plus
Dana\GF11858-PA 411 GF11858-PA 30..410 31..402 432 29 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22769-PA 453 GG22769-PA 12..453 12..453 2249 93.9 Plus
Dere\GG25141-PA 434 GG25141-PA 6..434 1..404 823 36.8 Plus
Dere\y-PA 541 GG12780-PA 25..410 22..407 796 38.3 Plus
Dere\GG16380-PA 459 GG16380-PA 49..445 22..415 717 35.9 Plus
Dere\GG17085-PA 452 GG17085-PA 96..452 50..403 609 34.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11563-PA 464 GH11563-PA 9..426 6..427 1688 73.5 Plus
Dgri\GH10914-PA 435 GH10914-PA 24..435 22..404 802 37 Plus
Dgri\GH24338-PA 546 GH24338-PA 9..408 8..407 785 38 Plus
Dgri\GH23996-PA 455 GH23996-PA 44..432 20..402 652 35.9 Plus
Dgri\GH19199-PA 446 GH19199-PA 89..446 50..403 600 33.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-b-PB 453 CG17914-PB 1..453 1..453 2379 100 Plus
yellow-b-PA 453 CG17914-PA 1..453 1..453 2379 100 Plus
yellow-c-PB 438 CG4182-PB 6..438 1..404 840 37.6 Plus
yellow-c-PA 438 CG4182-PA 6..438 1..404 840 37.6 Plus
y-PA 541 CG3757-PA 25..410 22..407 772 37.5 Plus
yellow-h-PA 463 CG1629-PA 49..440 18..402 724 37.3 Plus
yellow-f-PC 413 CG18550-PC 4..413 6..403 626 33.2 Plus
yellow-f-PB 418 CG18550-PB 4..418 6..403 625 32.8 Plus
yellow-f-PA 429 CG18550-PA 4..429 6..403 616 31.9 Plus
yellow-f2-PA 452 CG8063-PA 98..452 52..403 609 34.6 Plus
yellow-d2-PA 412 CG9891-PA 16..411 13..402 428 29.2 Plus
yellow-e2-PB 435 CG17044-PB 43..434 24..402 411 30 Plus
yellow-d-PA 432 CG9889-PA 39..406 27..389 406 31.4 Plus
yellow-e-PA 530 CG9792-PA 1..386 1..389 381 27.6 Plus
yellow-e3-PA 409 CG17045-PA 27..399 41..404 322 28 Plus
yellow-g-PA 393 CG5717-PA 46..373 30..377 185 23.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17054-PA 454 GI17054-PA 10..426 9..428 1712 73.8 Plus
Dmoj\GI13248-PA 432 GI13248-PA 2..432 4..404 828 37.6 Plus
Dmoj\GI21724-PA 543 GI21724-PA 30..415 22..407 743 36.5 Plus
Dmoj\GI11002-PA 470 GI11002-PA 49..446 16..402 684 37.5 Plus
Dmoj\GI24232-PA 417 GI24232-PA 60..417 50..403 621 34.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18784-PA 454 GL18784-PA 1..453 1..453 2049 82.8 Plus
Dper\GL26025-PA 438 GL26025-PA 9..438 2..404 841 37.8 Plus
Dper\GL20376-PA 482 GL20376-PA 34..421 22..409 789 38.1 Plus
Dper\GL18156-PA 466 GL18156-PA 48..443 15..402 684 35.4 Plus
Dper\GL23151-PA 436 GL23151-PA 80..436 50..403 620 34.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14722-PA 454 GA14722-PA 1..453 1..453 2048 82.8 Plus
Dpse\GA18010-PA 438 GA18010-PA 9..438 2..404 841 37.8 Plus
Dpse\y-PA 560 GA17665-PA 17..419 9..407 783 37.9 Plus
Dpse\GA27858-PA 427 GA27858-PA 9..404 15..402 685 35.4 Plus
Dpse\GA27163-PA 460 GA27163-PA 104..460 50..403 627 34.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17203-PA 453 GM17203-PA 1..453 1..453 2382 98.5 Plus
Dsec\GM15882-PA 438 GM15882-PA 9..438 6..404 844 37.7 Plus
Dsec\GM25969-PA 434 GM25969-PA 4..434 6..403 618 31.6 Plus
Dsec\GM25968-PA 452 GM25968-PA 96..452 50..403 613 33.9 Plus
Dsec\y-PA 426 GM19059-PA 9..321 6..317 591 36.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24079-PA 453 GD24079-PA 1..453 1..453 2385 98.5 Plus
Dsim\GD23989-PA 438 GD23989-PA 6..438 1..404 848 37.2 Plus
Dsim\GD20529-PA 429 GD20529-PA 4..429 6..403 612 31.9 Plus
Dsim\GD20528-PA 452 GD20528-PA 96..452 50..403 611 33.9 Plus
Dsim\y-PA 406 GD24705-PA 9..354 6..351 597 35 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17304-PA 466 GJ17304-PA 13..444 9..439 1795 76.8 Plus
Dvir\GJ11869-PA 435 GJ11869-PA 21..434 19..403 811 38.5 Plus
Dvir\y-PA 541 GJ15591-PA 27..412 22..407 763 37.5 Plus
Dvir\GJ14923-PA 455 GJ14923-PA 41..432 21..402 705 38.3 Plus
Dvir\GJ10805-PA 452 GJ10805-PA 95..452 50..403 620 33.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18231-PA 415 GK18231-PA 7..390 6..389 1647 76.9 Plus
Dwil\GK18310-PA 436 GK18310-PA 4..436 2..404 832 37.7 Plus
Dwil\GK25268-PA 545 GK25268-PA 29..414 22..407 786 38.3 Plus
Dwil\GK13672-PA 468 GK13672-PA 57..434 24..393 665 36.8 Plus
Dwil\GK12212-PA 404 GK12212-PA 50..404 54..403 579 32.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12764-PA 453 GE12764-PA 1..453 1..453 2351 96.2 Plus
Dyak\GE20803-PA 438 GE20803-PA 6..438 1..404 845 37 Plus
Dyak\y-PA 541 GE16608-PA 25..410 22..407 779 37.5 Plus
Dyak\GE14541-PA 463 GE14541-PA 53..449 22..415 688 35.4 Plus
Dyak\GE24475-PA 434 GE24475-PA 4..434 6..403 624 31.9 Plus