Clone LD43196 Report

Search the DGRC for LD43196

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:431
Well:96
Vector:pOT2
Associated Gene/TranscriptCG5262-RA
Protein status:LD43196.pep: gold
Preliminary Size:1628
Sequenced Size:1921

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5262 2001-01-01 Release 2 assignment
CG5262 2002-05-14 Blastp of sequenced clone
CG5262 2003-01-01 Sim4 clustering to Release 3
CG5262 2008-04-29 Release 5.5 accounting
CG5262 2008-08-15 Release 5.9 accounting
CG5262 2008-12-18 5.12 accounting

Clone Sequence Records

LD43196.complete Sequence

1921 bp (1921 high quality bases) assembled on 2002-05-14

GenBank Submission: AY118576

> LD43196.complete
AACAGTTGGGCACACTGCATTGAGTGCACTATCTGTTCTATTATTGTTTT
CTTTTTGTTAAGAGTTTGATTGAATCGGATTGGATAGAAGCCTGGTGAAA
AGACAAAGAACCAGCGTAAAGATGCCTCGCCTTGTCAATGGCCGCGAAGC
CGCGCCCACGTACTCGAATCTGGTTGGCTTCATATTCATTTTCAATCTAA
TCGTTGGAACCGGAGCGCTGACGCTACCCGGAGTCTTTGCCAGGGCAGGA
TGGATGCTTTCCCTGATCGTCATTGTTCTGCTGGCCATCATCAGTTACAT
GACGGTCACTTTTATCATAGAAGCAATGGCTTGTGCGAATGCAATCAGGA
ATTGGCAGACTCTGCAGGCCCTGCGCCAAAGTCGCAGTTCCGCCGAAAAC
AGTGAAAACGATGATAATGCTGATGATGTTTCGCTGGCATCGGGAGCCGA
GCAAGTTGGCGATTTCGAGCGGGTTCCGCTGACCATCCAAAACCGGGAGT
TCCACTACTATCAGCTGTCCCACAAATTCGAACTTGGCGAAATGGCGACA
CTATTCTTTAATGAGTTTGGCCGCGTAATGTTCTATCTCTGCCTGATTGT
TTATCTTTACGGGGATCTGAGCATATATTCCGCCGCCGTGGCAAGAAGTC
TGCGTGACGTCGTATGTGACCAAACAAATGGAACGGATACTAATAACTTG
ATGTATTGGCCCGGAGACTTTGAGAACAATACATCTCTGGCCTGCTGGAA
GGAACACACGATATCTCGCTTGAACATGTACAGGGTGTTGCTCATAGGAT
TCACATTGATCTTTGGTCCATTTGTGTACTTTAATGTGCAGAAAACGAAG
TACCTGCAGATGCTGACCGCTGCTTTTCGGTGGATGGCTTTTACCCTGAT
GATCTGCATATCGCTAAAACTTTTGATTTCCAGAGGTGCCAAAGGTCATC
CAGCGACCTTTAATGTATATGGAATTCCCTCTCTTTTCGGCGCCTGTGTT
TACTCCTTCATGTGCCACCACTCACTGCCCAGTTTGCTGGCGCCCATCAG
ACACAAGTCAATGGTTTCCAAAATTCTATCCATTGACTACATAATCATTT
GTGCATTTTACATTCTACTGGCCATGACAGGCATTTTTGCCTTCGAACGA
ATCGAAGACCTTTACACATTAGATTTTTTGCCCTACGATGTGGCCTACGT
AGACTTTTGGTCAGGTCTATTGATTTGCATTGATTACTTCCTTGCACTTT
TTCCCATATTTACCCTGTCAACCAGTTTTCCCATTGTTGCCATAACGCTG
AAGAACAACCTTCAATCTCTATTCCTAGACATGTCGCAATATGAATCCTA
TAGCGTTATCCTACGCCTGTGCTTCCCTTTGCTCGCCATAATTCCGCCTT
TTTGTATCACCTATTTCACTGAAAGTTTATCCAGTTTGGTGGCATTTACT
GGCACCTACGCAGGCACTGGCATTCAATACATTATCCCCGTTTTCTTGGT
TTACTTTGCGAGACGCACTTGCTCAGAGCTCCTGGGAAGCGGCGTAGTCA
ATCGTTTTAAAAGTCCTTTCAAGTCCAGTGCCTGGCTAGTTTTCGTCTTC
ATTTGGTCAATTTTATGCGTCTGTTTGGTATCTATAAATTTGTTCAGTTA
AGTTATCTTATCTGCCAATGTGGAGATATTTTACGGCATTGAGTTTATTA
CCGGCTAGTAAAGTCCCATGTCATTTATTTTTAAAGAAATACTATCAAAC
TAATGTAGTTGTACATATAAAATAAAGAATATATGTAAATTAATCGAATT
TTAGCAACGTAAGTCAGTATTGAAATCGGCTGTGACACAAATTTTCAATA
TATTTTTTATATAATATCTGGAATGTTAAATTCAAATAAAGTGAAAGCAT
AACCAAAAAAAAAAAAAAAAA

LD43196.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5262-RA 2096 CG5262-RA 6..1911 1..1906 9530 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20417106..20418123 1904..887 5075 99.9 Minus
chr3L 24539361 chr3L 20418522..20419016 666..172 2475 100 Minus
chr3L 24539361 chr3L 20418175..20418396 887..666 1110 100 Minus
chr3L 24539361 chr3L 20419317..20419490 174..1 870 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20428098..20429117 1906..887 5100 100 Minus
3L 28110227 3L 20429516..20430010 666..172 2475 100 Minus
3L 28110227 3L 20429169..20429390 887..666 1110 100 Minus
3L 28110227 3L 20430311..20430484 174..1 870 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20421198..20422217 1906..887 5100 100 Minus
3L 28103327 3L 20422616..20423110 666..172 2475 100 Minus
3L 28103327 3L 20422269..20422490 887..666 1110 100 Minus
3L 28103327 3L 20423411..20423584 174..1 870 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:05:08 has no hits.

LD43196.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:05:53 Download gff for LD43196.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20417106..20418122 888..1904 97 <- Minus
chr3L 20418175..20418395 667..887 100 <- Minus
chr3L 20418522..20419015 173..666 100 <- Minus
chr3L 20419319..20419490 1..172 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:25:50 Download gff for LD43196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5262-RA 1..1530 122..1651 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:52:30 Download gff for LD43196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5262-RA 1..1530 122..1651 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:39:22 Download gff for LD43196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5262-RA 1..1530 122..1651 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:45:08 Download gff for LD43196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5262-RA 1..1530 122..1651 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:52:27 Download gff for LD43196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5262-RA 1..1530 122..1651 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:30:41 Download gff for LD43196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5262-RA 1..1904 1..1904 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:52:29 Download gff for LD43196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5262-RA 1..1904 1..1904 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:22 Download gff for LD43196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5262-RA 1..1895 10..1904 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:45:08 Download gff for LD43196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5262-RA 1..1904 1..1904 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:27 Download gff for LD43196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5262-RA 1..1895 10..1904 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:05:53 Download gff for LD43196.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20428100..20429116 888..1904 100 <- Minus
3L 20429169..20429389 667..887 100 <- Minus
3L 20429516..20430009 173..666 100 <- Minus
3L 20430313..20430484 1..172 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:05:53 Download gff for LD43196.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20428100..20429116 888..1904 100 <- Minus
3L 20429169..20429389 667..887 100 <- Minus
3L 20429516..20430009 173..666 100 <- Minus
3L 20430313..20430484 1..172 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:05:53 Download gff for LD43196.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20428100..20429116 888..1904 100 <- Minus
3L 20429169..20429389 667..887 100 <- Minus
3L 20429516..20430009 173..666 100 <- Minus
3L 20430313..20430484 1..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:22 Download gff for LD43196.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20422269..20422489 667..887 100 <- Minus
arm_3L 20422616..20423109 173..666 100 <- Minus
arm_3L 20423413..20423584 1..172 100   Minus
arm_3L 20421200..20422216 888..1904 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:17:32 Download gff for LD43196.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20421200..20422216 888..1904 100 <- Minus
3L 20422269..20422489 667..887 100 <- Minus
3L 20422616..20423109 173..666 100 <- Minus
3L 20423413..20423584 1..172 100   Minus

LD43196.pep Sequence

Translation from 121 to 1650

> LD43196.pep
MPRLVNGREAAPTYSNLVGFIFIFNLIVGTGALTLPGVFARAGWMLSLIV
IVLLAIISYMTVTFIIEAMACANAIRNWQTLQALRQSRSSAENSENDDNA
DDVSLASGAEQVGDFERVPLTIQNREFHYYQLSHKFELGEMATLFFNEFG
RVMFYLCLIVYLYGDLSIYSAAVARSLRDVVCDQTNGTDTNNLMYWPGDF
ENNTSLACWKEHTISRLNMYRVLLIGFTLIFGPFVYFNVQKTKYLQMLTA
AFRWMAFTLMICISLKLLISRGAKGHPATFNVYGIPSLFGACVYSFMCHH
SLPSLLAPIRHKSMVSKILSIDYIIICAFYILLAMTGIFAFERIEDLYTL
DFLPYDVAYVDFWSGLLICIDYFLALFPIFTLSTSFPIVAITLKNNLQSL
FLDMSQYESYSVILRLCFPLLAIIPPFCITYFTESLSSLVAFTGTYAGTG
IQYIIPVFLVYFARRTCSELLGSGVVNRFKSPFKSSAWLVFVFIWSILCV
CLVSINLFS*

LD43196.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24135-PA 481 GF24135-PA 1..479 1..480 2304 89.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13312-PA 509 GG13312-PA 1..509 1..509 2616 96.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23942-PA 510 GH23942-PA 13..508 11..507 1637 65 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5262-PB 509 CG5262-PB 1..509 1..509 2643 100 Plus
CG5262-PA 509 CG5262-PA 1..509 1..509 2643 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14123-PA 486 GI14123-PA 1..485 18..508 1747 66.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11905-PA 508 GL11905-PA 1..508 1..509 2229 81.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18769-PA 508 GA18769-PA 1..508 1..509 2232 81.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22216-PA 509 GM22216-PA 1..509 1..509 2643 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12188-PA 509 GD12188-PA 1..509 1..509 2664 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19113-PA 435 GJ19113-PA 1..435 69..509 1619 67.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20393-PA 527 GK20393-PA 11..525 3..507 1903 72.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22746-PA 509 GE22746-PA 1..509 1..509 2630 97.6 Plus
Dyak\GE22402-PA 509 GE22402-PA 1..509 1..509 2626 97.4 Plus

LD43196.hyp Sequence

Translation from 121 to 1650

> LD43196.hyp
MPRLVNGREAAPTYSNLVGFIFIFNLIVGTGALTLPGVFARAGWMLSLIV
IVLLAIISYMTVTFIIEAMACANAIRNWQTLQALRQSRSSAENSENDDNA
DDVSLASGAEQVGDFERVPLTIQNREFHYYQLSHKFELGEMATLFFNEFG
RVMFYLCLIVYLYGDLSIYSAAVARSLRDVVCDQTNGTDTNNLMYWPGDF
ENNTSLACWKEHTISRLNMYRVLLIGFTLIFGPFVYFNVQKTKYLQMLTA
AFRWMAFTLMICISLKLLISRGAKGHPATFNVYGIPSLFGACVYSFMCHH
SLPSLLAPIRHKSMVSKILSIDYIIICAFYILLAMTGIFAFERIEDLYTL
DFLPYDVAYVDFWSGLLICIDYFLALFPIFTLSTSFPIVAITLKNNLQSL
FLDMSQYESYSVILRLCFPLLAIIPPFCITYFTESLSSLVAFTGTYAGTG
IQYIIPVFLVYFARRTCSELLGSGVVNRFKSPFKSSAWLVFVFIWSILCV
CLVSINLFS*

LD43196.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5262-PB 509 CG5262-PB 1..509 1..509 2643 100 Plus
CG5262-PA 509 CG5262-PA 1..509 1..509 2643 100 Plus