Clone LD43280 Report

Search the DGRC for LD43280

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:432
Well:80
Vector:pOT2
Associated Gene/TranscriptOrc4-RA
Protein status:LD43280.pep: gold
Preliminary Size:1776
Sequenced Size:1578

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2917 2001-01-01 Release 2 assignment
CG2917 2003-01-01 Sim4 clustering to Release 3
CG2917 2003-02-24 Blastp of sequenced clone
Orc4 2008-04-29 Release 5.5 accounting
Orc4 2008-08-15 Release 5.9 accounting
Orc4 2008-12-18 5.12 accounting

Clone Sequence Records

LD43280.complete Sequence

1578 bp (1578 high quality bases) assembled on 2003-02-24

GenBank Submission: BT004868

> LD43280.complete
ACTATCTGTGCGTCCATTTAACTAATAAATAAGGAGGAATAAAGGAGTTC
CGATCCGAGAGCGAAAATGCCGGAGGCGGATAGGGAGCTGGTCAGCATCA
GGCGCTTCCTGAAGGAGCGCCTCCAGCGAGACTACACCACCTTGAGGGGC
TACGCAAAGGAGCGGTCCAATGTGCGCCTATTGCTGCAACGCACAGCTGA
AATGGGGGAATCCAACTCCTTGCTGCTCCTTGGGCCGCGGGGATCCGGAA
AGACAACGCTCATCAACTCCGTGCTGGCCGATTTGCTGCCCAATAAATCG
TTCGGGGAAAACACTCTCATCGTCCACCTGGACGGTAATCTGCACACGGA
CGACCGAGTGGCCCTGAAGTCCATCACTGTGCAGATGCAGCTGGAGAACG
CTGCGGATGGGAAAGTGTTCGGATCGTTCGCCGAGAACCTCGCCTTCCTG
CTGCAATGCCTCAAGGCGGGTGGCAAGCATTCCAAGAGCGTGATCTTTAT
TCTCGAGGAGTTCGACCTCTTCTGTGCTCACCACAACCAGACCCTGCTCT
ACAACCTCTTCGACGTCTCCCAGTCAGCCCAGGCGCCCATCTGTGTACTT
GGCGTTACCTGTCGCCTCGACGTGATCGAGCTGCTGGAGAAGCGGGTCAA
GTCGCGTTTCTCGCACCGGCAGGTCTTTCTCTTTCCCAGCTTGCGGCGCT
TTGAGGATTACGTTGACCTGTGCAGGGATCTACTGTCCCTCCCGACCGGC
AATTCACTGTTGCTGGCGGCGGAGAAAATCTATAACCTACAAAACATCCA
GTCGGGGGCACTTTACTTCTCCCGCAACCATTTTGACCCCGGGGAGTACG
GCTTTTCGCCCAGACTACGCGATGCCTGGAACAAGCAAATATGCAAAGTC
CTGGCCACTCAGCAGGCAAGAAGCACCCTCCAAGCGCTCCATGACTTCGA
CATTAGCGAGGCCTATCTCAAGAACTTCCTATTCCGCCTGGTGGCACATC
TCCGACCGCAATCTCCCCACATCACAGCCGAAAAAATGGCTGCAGTGGGA
TCACAGTTTGAGGGCGACGACAAGATAGAGCTGCTTTGCGGGCTCTCAGT
CCTAGAGCTGTGCCTGATCATCGCCATCAAGCACCATTCGCAGATTTACG
ATCGCGATTCCTTCAACTTCGAGATCATTTACGCGCGCTTTTCCAAGTTT
GCCAAAGTGTCCACCACAATGCAGGCCGTGGAGCGGTCCATTGTCCTGAA
GGCCTTCGAGCATTTACGCATCGCAGAGCTGATCATGCCGCTCACCGGTG
GAGCTGGAGGGGGCGTAGGTAAGGTGCAGAAAGAGTTTGAGATGCATAAG
CTGGCGCTGACATACAGCCAGATTCACCACTGTATGCAGCGATACCAGGC
CCTTCCCACAGAGGTTGCTCAGTGGGCGCAAAGCTCTCTGATTTAGCAGC
AGATCAGAAATACTTTGTATATTTATTTATTTAAAAAAAATTGTACCGAA
TCATTTAGTTGGTAAAGCCCTGTTTTGGGAAAATAAACTAATTTTAATTT
ATAAAACGTAAAAAAAAAAAAAAAAAAA

LD43280.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
Orc4-RA 1615 Orc4-RA 56..1615 1..1560 7800 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20681680..20682981 1559..258 6495 99.9 Minus
chr2R 21145070 chr2R 20683041..20683298 258..1 1260 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24795739..24797041 1560..258 6515 100 Minus
2R 25286936 2R 24797101..24797358 258..1 1290 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24796938..24798240 1560..258 6515 100 Minus
2R 25260384 2R 24798300..24798557 258..1 1290 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:06:44 has no hits.

LD43280.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:07:22 Download gff for LD43280.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20681680..20682980 259..1559 98 <- Minus
chr2R 20683041..20683298 1..258 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:25:56 Download gff for LD43280.complete
Subject Subject Range Query Range Percent Splice Strand
Orc4-RA 1..1380 67..1446 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:48:24 Download gff for LD43280.complete
Subject Subject Range Query Range Percent Splice Strand
Orc4-RA 1..1380 67..1446 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:10:20 Download gff for LD43280.complete
Subject Subject Range Query Range Percent Splice Strand
Orc4-RA 1..1380 67..1446 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:39:47 Download gff for LD43280.complete
Subject Subject Range Query Range Percent Splice Strand
Orc4-RA 1..1380 67..1446 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:40 Download gff for LD43280.complete
Subject Subject Range Query Range Percent Splice Strand
Orc4-RA 1..1380 67..1446 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:00:42 Download gff for LD43280.complete
Subject Subject Range Query Range Percent Splice Strand
Orc4-RA 47..1605 1..1559 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:48:24 Download gff for LD43280.complete
Subject Subject Range Query Range Percent Splice Strand
Orc4-RA 47..1605 1..1559 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:20 Download gff for LD43280.complete
Subject Subject Range Query Range Percent Splice Strand
Orc4-RA 57..1615 1..1559 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:39:47 Download gff for LD43280.complete
Subject Subject Range Query Range Percent Splice Strand
Orc4-RA 47..1605 1..1559 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:40 Download gff for LD43280.complete
Subject Subject Range Query Range Percent Splice Strand
Orc4-RA 57..1615 1..1559 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:22 Download gff for LD43280.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24795740..24797040 259..1559 100 <- Minus
2R 24797101..24797358 1..258 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:22 Download gff for LD43280.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24795740..24797040 259..1559 100 <- Minus
2R 24797101..24797358 1..258 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:22 Download gff for LD43280.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24795740..24797040 259..1559 100 <- Minus
2R 24797101..24797358 1..258 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:20 Download gff for LD43280.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20683263..20684563 259..1559 100 <- Minus
arm_2R 20684624..20684881 1..258 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:10:09 Download gff for LD43280.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24796957..24798257 259..1559 100 <- Minus
2R 24798318..24798575 1..258 100   Minus

LD43280.hyp Sequence

Translation from 66 to 1445

> LD43280.hyp
MPEADRELVSIRRFLKERLQRDYTTLRGYAKERSNVRLLLQRTAEMGESN
SLLLLGPRGSGKTTLINSVLADLLPNKSFGENTLIVHLDGNLHTDDRVAL
KSITVQMQLENAADGKVFGSFAENLAFLLQCLKAGGKHSKSVIFILEEFD
LFCAHHNQTLLYNLFDVSQSAQAPICVLGVTCRLDVIELLEKRVKSRFSH
RQVFLFPSLRRFEDYVDLCRDLLSLPTGNSLLLAAEKIYNLQNIQSGALY
FSRNHFDPGEYGFSPRLRDAWNKQICKVLATQQARSTLQALHDFDISEAY
LKNFLFRLVAHLRPQSPHITAEKMAAVGSQFEGDDKIELLCGLSVLELCL
IIAIKHHSQIYDRDSFNFEIIYARFSKFAKVSTTMQAVERSIVLKAFEHL
RIAELIMPLTGGAGGGVGKVQKEFEMHKLALTYSQIHHCMQRYQALPTEV
AQWAQSSLI*

LD43280.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
Orc4-PA 459 CG2917-PA 1..459 1..459 2342 100 Plus

LD43280.pep Sequence

Translation from 66 to 1445

> LD43280.pep
MPEADRELVSIRRFLKERLQRDYTTLRGYAKERSNVRLLLQRTAEMGESN
SLLLLGPRGSGKTTLINSVLADLLPNKSFGENTLIVHLDGNLHTDDRVAL
KSITVQMQLENAADGKVFGSFAENLAFLLQCLKAGGKHSKSVIFILEEFD
LFCAHHNQTLLYNLFDVSQSAQAPICVLGVTCRLDVIELLEKRVKSRFSH
RQVFLFPSLRRFEDYVDLCRDLLSLPTGNSLLLAAEKIYNLQNIQSGALY
FSRNHFDPGEYGFSPRLRDAWNKQICKVLATQQARSTLQALHDFDISEAY
LKNFLFRLVAHLRPQSPHITAEKMAAVGSQFEGDDKIELLCGLSVLELCL
IIAIKHHSQIYDRDSFNFEIIYARFSKFAKVSTTMQAVERSIVLKAFEHL
RIAELIMPLTGGAGGGVGKVQKEFEMHKLALTYSQIHHCMQRYQALPTEV
AQWAQSSLI*

LD43280.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11538-PA 464 GF11538-PA 8..464 3..459 1809 75.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19886-PA 459 GG19886-PA 1..459 1..459 2237 93 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21533-PA 456 GH21533-PA 1..456 1..459 1857 74.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
Orc4-PA 459 CG2917-PA 1..459 1..459 2342 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19505-PA 456 GI19505-PA 1..456 1..459 1856 75.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17693-PA 456 GL17693-PA 1..456 1..459 1884 76.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15517-PA 456 GA15517-PA 1..456 1..459 1882 76.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11786-PA 459 GM11786-PA 1..459 1..459 2294 95.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24914-PA 567 GD24914-PA 168..567 60..459 1985 94.5 Plus
Dsim\GD24914-PA 567 GD24914-PA 1..172 1..172 878 96.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21075-PA 456 GJ21075-PA 1..456 1..459 1877 75.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21644-PA 458 GK21644-PA 1..458 1..459 1816 74.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11410-PA 459 GE11410-PA 1..459 1..459 2218 91.3 Plus