Clone LD43293 Report

Search the DGRC for LD43293

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:432
Well:93
Vector:pOT2
Associated Gene/TranscriptCG10165-RA
Protein status:LD43293.pep: gold
Preliminary Size:1414
Sequenced Size:1293

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10165 2001-01-01 Release 2 assignment
CG10165 2001-07-04 Blastp of sequenced clone
CG10165 2003-01-01 Sim4 clustering to Release 3
CG10165 2008-04-29 Release 5.5 accounting
CG10165 2008-08-15 Release 5.9 accounting
CG10137 2008-08-15 Release 5.9 accounting
CG10165 2008-12-18 5.12 accounting
CG10137 2008-12-18 5.12 accounting

Clone Sequence Records

LD43293.complete Sequence

1293 bp (1293 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051967

> LD43293.complete
CCCAGACAACGATTACGACTCTCTACGCCCGCTACTCACTGTCGCAGCGT
GGGAATGGCCCGCTCCTCGTAGTCTTCGTAGGAGTTTCGTGGAACGCTCT
TGTTGCGCCTGCGCAGCGATCCCTGTCGGCTGGACATTGGTACTTATTAG
GCTTGTAGCCAATTCCAATTAACTTAGCACATTAACTTACGTATAAGATA
CTGGTGTGCCAGGAGCTGGATGCGATAGATCTTGGCCGGCTGCTGGAATC
GGAGGATGATGTCATGTGAGGTGAGGCTGCCGTTCGGAGCACTTCGCCAT
CCGTGAACTGTGGGGCCGTGATTGTTTAACTCGCTAGCCGGAAAGTTAAC
ATCCTCGTCTGAAAGGTTCCACGCTCTTCTCTTCTATATTTAAGCGATGT
CGATGTTAACATGCTAGTTTAGTCGTCGCTCAGCCGTTCGTGTTTTGTTA
CTGAATCAGATAGTATTATTGAATCTTTTGAAATGGCGGAGGGTTACACG
AAAGCCACTGCCTGGCTGCAAATCCACAGCCTGCTGAATAGCATCAACCA
CATTCTGATCTTTCTGGTGGCCGTCTTCTTTTTCATACTGGCGCGCAGTC
TGGAGTTCAAGGATACCGCCATGCATATGTTTATGACCGGGACTGGATTC
CACGTCCTTATCGCCCAGGCCATGATGTCGCATTCGAAAGTGAACCCGCT
CACCCGTTGGCTGTCGCACCGAAACAAGTCGCGCTTCCACGCCATCCTGC
AGATTGTGGGTGGCTCCATGGTGCTGTTGGGCTCCCTGGGTAAATTTTCC
AGCAAGGAGGTGCACTTTAACACCTGGCACGGCCGAGTGGGGGGAGCTGC
TTCCTTTTTCTGCGCGGCCAGCATTGTAGGCGGTTTTGTCAACTATTTCC
AGCCCAAGTTCGCCCTGAAAGTAATGCCTCCATCAGAGCTTCGCTTCCGC
CATAATCTATTTGGATTGGTCACCTTTAGTCTGGGAATGGGCGCCATTTA
CCTGGGCTACTATTCGAAATTCTTTACCAAGTATGTGGATACTGACTTTA
TTCCCGGCATGATGCTGATTACCGGCATTGTTTATGGACTCACCATTATC
GCGCCGGTGTCATCGCTTCTAACTAAACTTAAGTATCGGTCCAAAAAGAA
GGCGGAGCAGGCCCAGTAGGTGATACTGGGGAGGATGAGGCTGAGGCCAT
CGAGGCTAACCAAAATTTGTCAGGTCCTAGCATGAAAATAAAGAGCTTGG
CGTTTGGCCAAATTTAAAAACAAAAAAAAAAAAAAAAAAAAAA

LD43293.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10165-RB 1337 CG10165-RB 52..1319 1..1268 6340 100 Plus
CG10165.a 1418 CG10165.a 286..1415 139..1268 5650 100 Plus
CG10165-RA 1114 CG10165-RA 193..1096 365..1268 4520 100 Plus
CG10165.a 1418 CG10165.a 50..190 1..141 705 100 Plus
CG10165-RA 1114 CG10165-RA 55..195 1..141 705 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19525820..19526248 1268..840 2145 100 Minus
chr2L 23010047 chr2L 19526630..19526913 647..364 1420 100 Minus
chr2L 23010047 chr2L 19527312..19527539 366..139 1140 100 Minus
chr2L 23010047 chr2L 19526302..19526495 841..648 970 100 Minus
chr2L 23010047 chr2L 19528630..19528770 141..1 705 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19527278..19527706 1268..840 2145 100 Minus
2L 23513712 2L 19528088..19528371 647..364 1420 100 Minus
2L 23513712 2L 19528770..19528997 366..139 1140 100 Minus
2L 23513712 2L 19527760..19527953 841..648 970 100 Minus
2L 23513712 2L 19530088..19530228 141..1 705 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19527278..19527706 1268..840 2145 100 Minus
2L 23513712 2L 19528088..19528371 647..364 1420 100 Minus
2L 23513712 2L 19528770..19528997 366..139 1140 100 Minus
2L 23513712 2L 19527760..19527953 841..648 970 100 Minus
2L 23513712 2L 19530088..19530228 141..1 705 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:20:38 has no hits.

LD43293.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:21:20 Download gff for LD43293.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19525818..19526247 841..1271 99 <- Minus
chr2L 19526303..19526495 648..840 100 <- Minus
chr2L 19526630..19526911 366..647 100 <- Minus
chr2L 19527313..19527538 140..365 100 <- Minus
chr2L 19528632..19528770 1..139 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:25:57 Download gff for LD43293.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 1..687 483..1169 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:01 Download gff for LD43293.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RC 1..687 483..1169 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:39:02 Download gff for LD43293.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 1..687 483..1169 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:47:28 Download gff for LD43293.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 1..687 483..1169 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:11 Download gff for LD43293.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RE 1..687 483..1169 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:10:02 Download gff for LD43293.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 50..1319 1..1271 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:01 Download gff for LD43293.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 50..1314 1..1265 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:02 Download gff for LD43293.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 78..1342 1..1265 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:47:28 Download gff for LD43293.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 50..1319 1..1271 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:11 Download gff for LD43293.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 78..1342 1..1265 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:21:20 Download gff for LD43293.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19527761..19527953 648..840 100 <- Minus
2L 19528088..19528369 366..647 100 <- Minus
2L 19528771..19528996 140..365 100 <- Minus
2L 19530090..19530228 1..139 100   Minus
2L 19527276..19527705 841..1271 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:21:20 Download gff for LD43293.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19527761..19527953 648..840 100 <- Minus
2L 19528088..19528369 366..647 100 <- Minus
2L 19528771..19528996 140..365 100 <- Minus
2L 19530090..19530228 1..139 100   Minus
2L 19527276..19527705 841..1271 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:21:20 Download gff for LD43293.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19527761..19527953 648..840 100 <- Minus
2L 19528088..19528369 366..647 100 <- Minus
2L 19528771..19528996 140..365 100 <- Minus
2L 19530090..19530228 1..139 100   Minus
2L 19527276..19527705 841..1271 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:02 Download gff for LD43293.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19527761..19527953 648..840 100 <- Minus
arm_2L 19527276..19527705 841..1271 99 <- Minus
arm_2L 19528088..19528369 366..647 100 <- Minus
arm_2L 19528771..19528996 140..365 100 <- Minus
arm_2L 19530090..19530228 1..139 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:25:26 Download gff for LD43293.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19527276..19527705 841..1271 99 <- Minus
2L 19527761..19527953 648..840 100 <- Minus
2L 19528088..19528369 366..647 100 <- Minus
2L 19528771..19528996 140..365 100 <- Minus
2L 19530090..19530228 1..139 100   Minus

LD43293.pep Sequence

Translation from 482 to 1168

> LD43293.pep
MAEGYTKATAWLQIHSLLNSINHILIFLVAVFFFILARSLEFKDTAMHMF
MTGTGFHVLIAQAMMSHSKVNPLTRWLSHRNKSRFHAILQIVGGSMVLLG
SLGKFSSKEVHFNTWHGRVGGAASFFCAASIVGGFVNYFQPKFALKVMPP
SELRFRHNLFGLVTFSLGMGAIYLGYYSKFFTKYVDTDFIPGMMLITGIV
YGLTIIAPVSSLLTKLKYRSKKKAEQAQ*

LD43293.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15625-PA 229 GF15625-PA 1..223 1..223 932 76.7 Plus
Dana\GF14251-PA 269 GF14251-PA 60..268 13..222 162 24.3 Plus
Dana\GF14250-PA 222 GF14250-PA 3..217 2..216 161 26.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21623-PA 228 GG21623-PA 1..224 1..224 1059 95.1 Plus
Dere\GG21199-PA 222 GG21199-PA 1..216 1..215 191 28.6 Plus
Dere\GG21200-PA 269 GG21200-PA 51..268 4..222 175 25.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13501-PA 230 GH13501-PA 10..227 6..223 887 72 Plus
Dgri\GH10493-PA 195 GH10493-PA 25..192 56..223 676 70.2 Plus
Dgri\GH13426-PA 222 GH13426-PA 1..216 1..215 174 28.6 Plus
Dgri\GH13959-PA 226 GH13959-PA 17..225 13..222 160 25.7 Plus
Dgri\GH13958-PA 226 GH13958-PA 8..225 4..222 156 26 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10165-PD 228 CG10165-PD 1..228 1..228 1178 100 Plus
CG10165-PC 228 CG10165-PC 1..228 1..228 1178 100 Plus
CG10165-PE 228 CG10165-PE 1..228 1..228 1178 100 Plus
CG10165-PB 228 CG10165-PB 1..228 1..228 1178 100 Plus
CG10165-PA 228 CG10165-PA 1..228 1..228 1178 100 Plus
CG13077-PB 226 CG13077-PB 17..225 13..222 206 25.7 Plus
CG13077-PA 269 CG13077-PA 60..268 13..222 206 25.7 Plus
CG13078-PA 222 CG13078-PA 1..217 1..216 198 28.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10191-PA 228 GI10191-PA 9..228 6..224 884 74.5 Plus
Dmoj\GI13934-PA 222 GI13934-PA 1..216 1..215 172 28.6 Plus
Dmoj\GI13943-PA 288 GI13943-PA 84..287 18..222 159 27.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25680-PA 228 GL25680-PA 1..228 1..228 1034 83.3 Plus
Dper\GL25554-PA 226 GL25554-PA 15..225 11..222 195 25.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10125-PA 228 GA10125-PA 1..228 1..228 1036 83.8 Plus
Dpse\GA12027-PA 226 GA12027-PA 15..225 11..222 195 25.9 Plus
Dpse\GA12028-PA 222 GA12028-PA 15..217 14..216 142 26.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17001-PA 228 GM17001-PA 1..228 1..228 1169 96.9 Plus
Dsec\GM17371-PA 269 GM17371-PA 50..268 3..222 186 25 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21747-PA 157 GD21747-PA 1..148 1..152 652 84.2 Plus
Dsim\GD24226-PA 222 GD24226-PA 1..217 1..216 191 28.4 Plus
Dsim\GD24227-PA 269 GD24227-PA 50..268 3..222 165 25 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18011-PA 229 GJ18011-PA 11..229 8..226 921 76.3 Plus
Dvir\GJ18230-PA 224 GJ18230-PA 10..218 7..215 183 30 Plus
Dvir\GJ18231-PA 280 GJ18231-PA 71..274 13..217 162 26.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23711-PA 229 GK23711-PA 1..213 1..213 834 73.2 Plus
Dwil\GK14918-PA 283 GK14918-PA 78..282 18..222 175 27.2 Plus
Dwil\GK14917-PA 222 GK14917-PA 15..218 14..217 149 27.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12642-PA 228 GE12642-PA 1..228 1..228 1156 95.2 Plus
Dyak\GE13272-PA 222 GE13272-PA 1..216 1..215 185 28.1 Plus
Dyak\GE13274-PA 269 GE13274-PA 50..263 3..217 168 25.6 Plus

LD43293.hyp Sequence

Translation from 482 to 1168

> LD43293.hyp
MAEGYTKATAWLQIHSLLNSINHILIFLVAVFFFILARSLEFKDTAMHMF
MTGTGFHVLIAQAMMSHSKVNPLTRWLSHRNKSRFHAILQIVGGSMVLLG
SLGKFSSKEVHFNTWHGRVGGAASFFCAASIVGGFVNYFQPKFALKVMPP
SELRFRHNLFGLVTFSLGMGAIYLGYYSKFFTKYVDTDFIPGMMLITGIV
YGLTIIAPVSSLLTKLKYRSKKKAEQAQ*

LD43293.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10165-PD 228 CG10165-PD 1..228 1..228 1178 100 Plus
CG10165-PC 228 CG10165-PC 1..228 1..228 1178 100 Plus
CG10165-PE 228 CG10165-PE 1..228 1..228 1178 100 Plus
CG10165-PB 228 CG10165-PB 1..228 1..228 1178 100 Plus
CG10165-PA 228 CG10165-PA 1..228 1..228 1178 100 Plus