Clone LD43341 Report

Search the DGRC for LD43341

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:433
Well:41
Vector:pOT2
Associated Gene/TranscriptMCPH1-RB
Protein status:LD43341.pep: gold
Preliminary Size:2416
Sequenced Size:2873

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13184 2001-01-01 Release 2 assignment
CG8981 2001-01-01 Release 2 assignment
CG8981 2002-06-12 Blastp of sequenced clone
MCPH1 2008-04-29 Release 5.5 accounting
MCPH1 2008-08-15 Release 5.9 accounting
MCPH1 2008-12-18 5.12 accounting

Clone Sequence Records

LD43341.complete Sequence

2873 bp (2873 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122187

> LD43341.complete
TTTTTGTGAGGTTTGGATTAGAAAATTATTGGCGCCTCTTTTGCAGAGTT
TTGCGACCGACTTCATTGCAATAAGGAGCGCCAGAGTGCGGAGAACATAG
CCCGTGACCATGGACAAGTTTCTGTTGCGCAATCCCACGTGGAAGACGAA
GACGTACGGATCGGTCGTGGCCAGTTCCGCCGCAGCTGCCAAGAAAACAG
CGGCGTCATCGACCCGCCGACCGTTGCACGATTCAAATCTGGGCGACTTC
AGGTCCAAAGCAGCGGCACCGTCTCCCAAATCTCTATCCCAGGCCCCGGC
AGATGACCAGGCGGCCAGGGATCGGCTGATGCTCAAGCCGGCATTAGCCG
TCTCCAAAGCGATCAGCCAGCACCGCTCCGAGTTCCACCAGGACGAGAAC
GAGGCGGGAGCAGAAGGATCTGCAGCAAAACCAGATCCACCCATCGGAGC
AGCCACGCCAACCAGGCAGGAAGGACACTGGGCCCGACTGCAGCAAGATC
TCAACAGCCCCAACGCTGCACTCCGATTACGCGCCATTCGTGCATTAAAA
AGCCCCACCAAGTCGGCATACAATACCTTCGATGTGCCTTTAGCCGAACA
AAGCATCATCACGATGGAAGAACGCAATCCCCAGGAGCCGCCCTCCCTCC
CCGAGTTGCTCAAGGACATAGTCGTATATGTGGAGGTGCGAACTGGAAAC
GACAATCGCTCTGAGGGCGTAAAATCAATTATTGCCAAGATGGGAGCCCA
GGTCAAAGATCGCCTAACGCGAACCACCACACACGTTGTCTTCAAGGATG
GCCTGCTCTCCACCTATAAAAAGGCCACCGAGTGGAATATACCAGTCGTT
TCCATTCTGTGGATTGAAGCTTGCAAGGTGCAGCTGAAAATATGCGATCC
CAAGCAATTTCCAATCAGCAATATACGCATGTACGAGTATCCCGAGCTCT
TTGGCAAAATGCCGCGCGTTAAGTTCATGCAGCCGGACTCCGAGTTGAAT
CAGCGACCCCGCAAACGCCAAGGAACACCCACATCCTCCAAGGACAACGA
GCCAGGATCGACTAACAAACGAGCCCAGACCGGAACTCCAACAACCACCA
CACCAAAGAATGACATCAGCCGCTTTTTCAGAGCCATTAACCACAATAAG
CCATCGGATGATGAGGCAATAGAGTCGCCAGCCACCAAACTACTCAACAG
GATAAGCAGTGGATGCTACACTCCTTTGCCGGCCGGTGGCACTCCCCAGC
TGATGGGAACCAATGGTAGTGGAGATGCGGTGGCCCAAAAGGTGCAGGCC
CAAAAGAGTTTGCAATTTGGAGAGCAGACGGACAGCAATACCCCCCAGGC
AAAACCATCGAGCACTTCACGCCCACGGCGGAGCACAGTGGATCCACCGC
CGGTAATGACGCCACCAGTGCGCACCACTCGCCGTCGTAGCTGCGTAGCT
GAAATCAGCAGTCCTGCTGCAACGGATACGAGAATGACCCGCCGCAGAAG
TTCGCTACTCACTTCCACGGTTATTCACGAGGCCGATCCAACTCAAACCG
CAGTTGCGGAACCCAGAATGACTCGTCGCAGGAGCTCATTGCTAGGGATT
GCCAAACAAGCAGAAGAAACCGCCCAAAGGCAAACCATTCAACCCATAAC
GGAGGAGCTGGCTCCCGTTGAAGAGAACAGGAATTCTATAATTATGGCCG
AGACCAATATAATCAACAACACCAATTGTCTTGAGCAATCAATTGAGATA
ACTGCCGTGGAGGCAGAAGCTTCTTTTAAAGCGGACAGACGTGGCACGCT
CTATGCCTCAGAATTGATGGACATAAGTTCTCCTCGTCGGCGCAGCGTGG
CCAAGTCGAGCTTAGAGTTGAGGCAGGAAAACTTAGCTCCGAGGGCCAGG
CAGTCGCTCAGCAACGTGACTACTCAGACGTCCTTTTTAGACGTTGAGCA
GCAAGTGACGCCGCTGTTCAGCTCCACACGACTGCCCACAGGCCAGACTA
CAGGAAATCGCAGGCGAACTATTTTTAACATGGACATGGACGTGATCAAC
GAGAGCATCGAAAGAATGAACCAGTCACATCGAATGTCCCTAGCCTTGGC
CAATAAGGCGGAGCTGGGCGAGTCTTGCCAAGTCCATGAACAAGAGCCAC
CGCAAGCAGAGCCAGTCCCATCACAAGAGCCCAAAAGGCGGCGCCTTTTC
AATCCAAACGACGAGGTGGTCATTTCGCCAGCGATGAGCAACAGAAAGAG
TCGTTTGAGCATAACCGGATCCGGATCATCGAGCTCGGTGCAGAAGCGTC
GACGCTCGCTAGCCACTCCCGCAAAGTCTTCATCATCAGAGTTGTGTGCC
ACGACTCCTCTTTCCAAAGCCGTCACAAACAAGGAGGCAGAAAAGTCCAA
GAGCAATACAGAAATATCTGAGGCTTCGTTGGATGCCGTTCCGGAAGTGA
AGAAATCTACATCAAACGCCGGGGAAGAGAATGAGAAACCAAAGGGCAAA
TCACGTACACGGATTCGCACGCTAGTCCACACCAACATGCACCAGGAGCA
GATCAACGTCATCCGCAAGGTTGGTAATACGACGGAGTGACCAATATACC
ATCCACATCTCCCTCTGATTGTAACCGTTGTATAGCCAGTTTTGCAACTC
CACTAATGGATTAGTTAGTAGTAAACCGTACTAGTTTGTAAATTAGCATA
TTCACAACTCGTTAATGGTCCCATATTAATTATTGATTAAGCATAAACAA
CACTCGGTAGATTGGTAGCGCAGTAACTCATTTGTAAAGCCTCCCGCACA
GTTGAATAAACAATATCCGTGGCGGTTATAAATCCTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA

LD43341.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
MCPH1-RB 2893 MCPH1-RB 43..2880 1..2838 14190 100 Plus
MCPH1.a 2997 MCPH1.a 392..2929 301..2838 12690 100 Plus
MCPH1.b 3626 MCPH1.b 476..2745 301..2570 11350 100 Plus
MCPH1.b 3626 MCPH1.b 7..308 1..302 1510 100 Plus
MCPH1.a 2997 MCPH1.a 1..224 79..302 1120 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7784113..7785750 2836..1199 8190 100 Minus
chr2R 21145070 chr2R 7790859..7791160 302..1 1510 100 Minus
chr2R 21145070 chr2R 7790447..7790695 549..301 1245 100 Minus
chr2R 21145070 chr2R 7789901..7790122 771..550 1110 100 Minus
chr2R 21145070 chr2R 7789640..7789833 964..771 970 100 Minus
chr2R 21145070 chr2R 7786190..7786334 1108..964 725 100 Minus
chr2R 21145070 chr2R 7785817..7785911 1201..1107 475 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11896840..11898479 2838..1199 8200 100 Minus
2R 25286936 2R 11903581..11903882 302..1 1510 100 Minus
2R 25286936 2R 11903165..11903413 549..301 1245 100 Minus
2R 25286936 2R 11902619..11902840 771..550 1110 100 Minus
2R 25286936 2R 11902358..11902551 964..771 970 100 Minus
2R 25286936 2R 11898919..11899063 1108..964 725 100 Minus
2R 25286936 2R 11898546..11898640 1201..1107 475 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11898039..11899678 2838..1199 8200 100 Minus
2R 25260384 2R 11904780..11905081 302..1 1510 100 Minus
2R 25260384 2R 11904364..11904612 549..301 1245 100 Minus
2R 25260384 2R 11903818..11904039 771..550 1110 100 Minus
2R 25260384 2R 11903557..11903750 964..771 970 100 Minus
2R 25260384 2R 11900118..11900262 1108..964 725 100 Minus
2R 25260384 2R 11899745..11899839 1201..1107 475 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:29:06 has no hits.

LD43341.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:30:08 Download gff for LD43341.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7784113..7785748 1201..2836 100 <- Minus
chr2R 7785818..7785909 1109..1200 100 <- Minus
chr2R 7786190..7786333 965..1108 100 <- Minus
chr2R 7789640..7789832 772..964 100 <- Minus
chr2R 7789901..7790122 550..771 100 <- Minus
chr2R 7790447..7790693 303..549 100 <- Minus
chr2R 7790859..7791160 1..302 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:25:59 Download gff for LD43341.complete
Subject Subject Range Query Range Percent Splice Strand
MCPH1-RB 1..2481 110..2590 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:24:06 Download gff for LD43341.complete
Subject Subject Range Query Range Percent Splice Strand
MCPH1-RB 1..2481 110..2590 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:30:41 Download gff for LD43341.complete
Subject Subject Range Query Range Percent Splice Strand
MCPH1-RB 1..2481 110..2590 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:14:45 Download gff for LD43341.complete
Subject Subject Range Query Range Percent Splice Strand
MCPH1-RB 1..2481 110..2590 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:40:35 Download gff for LD43341.complete
Subject Subject Range Query Range Percent Splice Strand
MCPH1-RB 1..2481 110..2590 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:51:27 Download gff for LD43341.complete
Subject Subject Range Query Range Percent Splice Strand
MCPH1-RB 1..2836 1..2836 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:24:06 Download gff for LD43341.complete
Subject Subject Range Query Range Percent Splice Strand
MCPH1-RB 43..2878 1..2836 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:41 Download gff for LD43341.complete
Subject Subject Range Query Range Percent Splice Strand
MCPH1-RB 37..2872 1..2836 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:14:46 Download gff for LD43341.complete
Subject Subject Range Query Range Percent Splice Strand
MCPH1-RB 1..2836 1..2836 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:40:35 Download gff for LD43341.complete
Subject Subject Range Query Range Percent Splice Strand
MCPH1-RB 37..2872 1..2836 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:30:08 Download gff for LD43341.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11903581..11903882 1..302 100   Minus
2R 11896842..11898477 1201..2836 100 <- Minus
2R 11898547..11898638 1109..1200 100 <- Minus
2R 11898919..11899062 965..1108 100 <- Minus
2R 11902358..11902550 772..964 100 <- Minus
2R 11902619..11902840 550..771 100 <- Minus
2R 11903165..11903411 303..549 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:30:08 Download gff for LD43341.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11903581..11903882 1..302 100   Minus
2R 11896842..11898477 1201..2836 100 <- Minus
2R 11898547..11898638 1109..1200 100 <- Minus
2R 11898919..11899062 965..1108 100 <- Minus
2R 11902358..11902550 772..964 100 <- Minus
2R 11902619..11902840 550..771 100 <- Minus
2R 11903165..11903411 303..549 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:30:08 Download gff for LD43341.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11903581..11903882 1..302 100   Minus
2R 11896842..11898477 1201..2836 100 <- Minus
2R 11898547..11898638 1109..1200 100 <- Minus
2R 11898919..11899062 965..1108 100 <- Minus
2R 11902358..11902550 772..964 100 <- Minus
2R 11902619..11902840 550..771 100 <- Minus
2R 11903165..11903411 303..549 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:41 Download gff for LD43341.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7784347..7785982 1201..2836 100 <- Minus
arm_2R 7786052..7786143 1109..1200 100 <- Minus
arm_2R 7786424..7786567 965..1108 100 <- Minus
arm_2R 7789863..7790055 772..964 100 <- Minus
arm_2R 7790124..7790345 550..771 100 <- Minus
arm_2R 7790670..7790916 303..549 100 <- Minus
arm_2R 7791086..7791387 1..302 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:47:44 Download gff for LD43341.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11898041..11899676 1201..2836 100 <- Minus
2R 11899746..11899837 1109..1200 100 <- Minus
2R 11900118..11900261 965..1108 100 <- Minus
2R 11903557..11903749 772..964 100 <- Minus
2R 11903818..11904039 550..771 100 <- Minus
2R 11904364..11904610 303..549 100 <- Minus
2R 11904780..11905081 1..302 100   Minus

LD43341.pep Sequence

Translation from 109 to 2589

> LD43341.pep
MDKFLLRNPTWKTKTYGSVVASSAAAAKKTAASSTRRPLHDSNLGDFRSK
AAAPSPKSLSQAPADDQAARDRLMLKPALAVSKAISQHRSEFHQDENEAG
AEGSAAKPDPPIGAATPTRQEGHWARLQQDLNSPNAALRLRAIRALKSPT
KSAYNTFDVPLAEQSIITMEERNPQEPPSLPELLKDIVVYVEVRTGNDNR
SEGVKSIIAKMGAQVKDRLTRTTTHVVFKDGLLSTYKKATEWNIPVVSIL
WIEACKVQLKICDPKQFPISNIRMYEYPELFGKMPRVKFMQPDSELNQRP
RKRQGTPTSSKDNEPGSTNKRAQTGTPTTTTPKNDISRFFRAINHNKPSD
DEAIESPATKLLNRISSGCYTPLPAGGTPQLMGTNGSGDAVAQKVQAQKS
LQFGEQTDSNTPQAKPSSTSRPRRSTVDPPPVMTPPVRTTRRRSCVAEIS
SPAATDTRMTRRRSSLLTSTVIHEADPTQTAVAEPRMTRRRSSLLGIAKQ
AEETAQRQTIQPITEELAPVEENRNSIIMAETNIINNTNCLEQSIEITAV
EAEASFKADRRGTLYASELMDISSPRRRSVAKSSLELRQENLAPRARQSL
SNVTTQTSFLDVEQQVTPLFSSTRLPTGQTTGNRRRTIFNMDMDVINESI
ERMNQSHRMSLALANKAELGESCQVHEQEPPQAEPVPSQEPKRRRLFNPN
DEVVISPAMSNRKSRLSITGSGSSSSVQKRRRSLATPAKSSSSELCATTP
LSKAVTNKEAEKSKSNTEISEASLDAVPEVKKSTSNAGEENEKPKGKSRT
RIRTLVHTNMHQEQINVIRKVGNTTE*

LD43341.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11801-PA 823 GF11801-PA 1..823 1..826 2276 58.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22621-PA 813 GG22621-PA 1..813 1..826 3309 81.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20404-PA 965 GH20404-PA 29..757 117..820 1211 43.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
MCPH1-PB 826 CG8981-PB 1..826 1..826 4176 100 Plus
MCPH1-PD 1028 CG42572-PD 1..820 1..820 4145 100 Plus
MCPH1-PA 779 CG8981-PA 18..779 65..826 3855 100 Plus
MCPH1-PC 981 CG42572-PC 18..773 65..820 3824 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19591-PA 742 GI19591-PA 7..739 118..825 1240 42.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10243-PA 659 GL10243-PA 1..659 1..573 1241 44.2 Plus
Dper\GL10244-PA 378 GL10244-PA 1..174 643..820 326 46.2 Plus
Dper\GL14362-PA 103 GL14362-PA 52..98 125..171 152 63.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24135-PA 879 GA24135-PA 1..874 1..826 1728 46.9 Plus
Dpse\GA22992-PA 103 GA22992-PA 52..98 125..171 148 61.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20401-PA 822 GM20401-PA 1..822 1..826 3874 94.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25875-PA 822 GD25875-PA 1..822 1..826 3892 94.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18380-PA 765 GJ18380-PA 7..761 100..824 1366 46 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22251-PA 1150 GK22251-PA 1..940 1..820 1480 44.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13490-PA 810 GE13490-PA 1..810 1..826 3604 84.7 Plus

LD43341.hyp Sequence

Translation from 109 to 2589

> LD43341.hyp
MDKFLLRNPTWKTKTYGSVVASSAAAAKKTAASSTRRPLHDSNLGDFRSK
AAAPSPKSLSQAPADDQAARDRLMLKPALAVSKAISQHRSEFHQDENEAG
AEGSAAKPDPPIGAATPTRQEGHWARLQQDLNSPNAALRLRAIRALKSPT
KSAYNTFDVPLAEQSIITMEERNPQEPPSLPELLKDIVVYVEVRTGNDNR
SEGVKSIIAKMGAQVKDRLTRTTTHVVFKDGLLSTYKKATEWNIPVVSIL
WIEACKVQLKICDPKQFPISNIRMYEYPELFGKMPRVKFMQPDSELNQRP
RKRQGTPTSSKDNEPGSTNKRAQTGTPTTTTPKNDISRFFRAINHNKPSD
DEAIESPATKLLNRISSGCYTPLPAGGTPQLMGTNGSGDAVAQKVQAQKS
LQFGEQTDSNTPQAKPSSTSRPRRSTVDPPPVMTPPVRTTRRRSCVAEIS
SPAATDTRMTRRRSSLLTSTVIHEADPTQTAVAEPRMTRRRSSLLGIAKQ
AEETAQRQTIQPITEELAPVEENRNSIIMAETNIINNTNCLEQSIEITAV
EAEASFKADRRGTLYASELMDISSPRRRSVAKSSLELRQENLAPRARQSL
SNVTTQTSFLDVEQQVTPLFSSTRLPTGQTTGNRRRTIFNMDMDVINESI
ERMNQSHRMSLALANKAELGESCQVHEQEPPQAEPVPSQEPKRRRLFNPN
DEVVISPAMSNRKSRLSITGSGSSSSVQKRRRSLATPAKSSSSELCATTP
LSKAVTNKEAEKSKSNTEISEASLDAVPEVKKSTSNAGEENEKPKGKSRT
RIRTLVHTNMHQEQINVIRKVGNTTE*

LD43341.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
MCPH1-PB 826 CG8981-PB 1..826 1..826 4176 100 Plus
MCPH1-PD 1028 CG42572-PD 1..820 1..820 4145 100 Plus
MCPH1-PA 779 CG8981-PA 18..779 65..826 3855 100 Plus
MCPH1-PC 981 CG42572-PC 18..773 65..820 3824 100 Plus