BDGP Sequence Production Resources |
Search the DGRC for LD43341
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 433 |
Well: | 41 |
Vector: | pOT2 |
Associated Gene/Transcript | MCPH1-RB |
Protein status: | LD43341.pep: gold |
Preliminary Size: | 2416 |
Sequenced Size: | 2873 |
Gene | Date | Evidence |
---|---|---|
CG13184 | 2001-01-01 | Release 2 assignment |
CG8981 | 2001-01-01 | Release 2 assignment |
CG8981 | 2002-06-12 | Blastp of sequenced clone |
MCPH1 | 2008-04-29 | Release 5.5 accounting |
MCPH1 | 2008-08-15 | Release 5.9 accounting |
MCPH1 | 2008-12-18 | 5.12 accounting |
2873 bp (2873 high quality bases) assembled on 2002-06-12
GenBank Submission: AY122187
> LD43341.complete TTTTTGTGAGGTTTGGATTAGAAAATTATTGGCGCCTCTTTTGCAGAGTT TTGCGACCGACTTCATTGCAATAAGGAGCGCCAGAGTGCGGAGAACATAG CCCGTGACCATGGACAAGTTTCTGTTGCGCAATCCCACGTGGAAGACGAA GACGTACGGATCGGTCGTGGCCAGTTCCGCCGCAGCTGCCAAGAAAACAG CGGCGTCATCGACCCGCCGACCGTTGCACGATTCAAATCTGGGCGACTTC AGGTCCAAAGCAGCGGCACCGTCTCCCAAATCTCTATCCCAGGCCCCGGC AGATGACCAGGCGGCCAGGGATCGGCTGATGCTCAAGCCGGCATTAGCCG TCTCCAAAGCGATCAGCCAGCACCGCTCCGAGTTCCACCAGGACGAGAAC GAGGCGGGAGCAGAAGGATCTGCAGCAAAACCAGATCCACCCATCGGAGC AGCCACGCCAACCAGGCAGGAAGGACACTGGGCCCGACTGCAGCAAGATC TCAACAGCCCCAACGCTGCACTCCGATTACGCGCCATTCGTGCATTAAAA AGCCCCACCAAGTCGGCATACAATACCTTCGATGTGCCTTTAGCCGAACA AAGCATCATCACGATGGAAGAACGCAATCCCCAGGAGCCGCCCTCCCTCC CCGAGTTGCTCAAGGACATAGTCGTATATGTGGAGGTGCGAACTGGAAAC GACAATCGCTCTGAGGGCGTAAAATCAATTATTGCCAAGATGGGAGCCCA GGTCAAAGATCGCCTAACGCGAACCACCACACACGTTGTCTTCAAGGATG GCCTGCTCTCCACCTATAAAAAGGCCACCGAGTGGAATATACCAGTCGTT TCCATTCTGTGGATTGAAGCTTGCAAGGTGCAGCTGAAAATATGCGATCC CAAGCAATTTCCAATCAGCAATATACGCATGTACGAGTATCCCGAGCTCT TTGGCAAAATGCCGCGCGTTAAGTTCATGCAGCCGGACTCCGAGTTGAAT CAGCGACCCCGCAAACGCCAAGGAACACCCACATCCTCCAAGGACAACGA GCCAGGATCGACTAACAAACGAGCCCAGACCGGAACTCCAACAACCACCA CACCAAAGAATGACATCAGCCGCTTTTTCAGAGCCATTAACCACAATAAG CCATCGGATGATGAGGCAATAGAGTCGCCAGCCACCAAACTACTCAACAG GATAAGCAGTGGATGCTACACTCCTTTGCCGGCCGGTGGCACTCCCCAGC TGATGGGAACCAATGGTAGTGGAGATGCGGTGGCCCAAAAGGTGCAGGCC CAAAAGAGTTTGCAATTTGGAGAGCAGACGGACAGCAATACCCCCCAGGC AAAACCATCGAGCACTTCACGCCCACGGCGGAGCACAGTGGATCCACCGC CGGTAATGACGCCACCAGTGCGCACCACTCGCCGTCGTAGCTGCGTAGCT GAAATCAGCAGTCCTGCTGCAACGGATACGAGAATGACCCGCCGCAGAAG TTCGCTACTCACTTCCACGGTTATTCACGAGGCCGATCCAACTCAAACCG CAGTTGCGGAACCCAGAATGACTCGTCGCAGGAGCTCATTGCTAGGGATT GCCAAACAAGCAGAAGAAACCGCCCAAAGGCAAACCATTCAACCCATAAC GGAGGAGCTGGCTCCCGTTGAAGAGAACAGGAATTCTATAATTATGGCCG AGACCAATATAATCAACAACACCAATTGTCTTGAGCAATCAATTGAGATA ACTGCCGTGGAGGCAGAAGCTTCTTTTAAAGCGGACAGACGTGGCACGCT CTATGCCTCAGAATTGATGGACATAAGTTCTCCTCGTCGGCGCAGCGTGG CCAAGTCGAGCTTAGAGTTGAGGCAGGAAAACTTAGCTCCGAGGGCCAGG CAGTCGCTCAGCAACGTGACTACTCAGACGTCCTTTTTAGACGTTGAGCA GCAAGTGACGCCGCTGTTCAGCTCCACACGACTGCCCACAGGCCAGACTA CAGGAAATCGCAGGCGAACTATTTTTAACATGGACATGGACGTGATCAAC GAGAGCATCGAAAGAATGAACCAGTCACATCGAATGTCCCTAGCCTTGGC CAATAAGGCGGAGCTGGGCGAGTCTTGCCAAGTCCATGAACAAGAGCCAC CGCAAGCAGAGCCAGTCCCATCACAAGAGCCCAAAAGGCGGCGCCTTTTC AATCCAAACGACGAGGTGGTCATTTCGCCAGCGATGAGCAACAGAAAGAG TCGTTTGAGCATAACCGGATCCGGATCATCGAGCTCGGTGCAGAAGCGTC GACGCTCGCTAGCCACTCCCGCAAAGTCTTCATCATCAGAGTTGTGTGCC ACGACTCCTCTTTCCAAAGCCGTCACAAACAAGGAGGCAGAAAAGTCCAA GAGCAATACAGAAATATCTGAGGCTTCGTTGGATGCCGTTCCGGAAGTGA AGAAATCTACATCAAACGCCGGGGAAGAGAATGAGAAACCAAAGGGCAAA TCACGTACACGGATTCGCACGCTAGTCCACACCAACATGCACCAGGAGCA GATCAACGTCATCCGCAAGGTTGGTAATACGACGGAGTGACCAATATACC ATCCACATCTCCCTCTGATTGTAACCGTTGTATAGCCAGTTTTGCAACTC CACTAATGGATTAGTTAGTAGTAAACCGTACTAGTTTGTAAATTAGCATA TTCACAACTCGTTAATGGTCCCATATTAATTATTGATTAAGCATAAACAA CACTCGGTAGATTGGTAGCGCAGTAACTCATTTGTAAAGCCTCCCGCACA GTTGAATAAACAATATCCGTGGCGGTTATAAATCCTAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MCPH1-RB | 2893 | MCPH1-RB | 43..2880 | 1..2838 | 14190 | 100 | Plus |
MCPH1.a | 2997 | MCPH1.a | 392..2929 | 301..2838 | 12690 | 100 | Plus |
MCPH1.b | 3626 | MCPH1.b | 476..2745 | 301..2570 | 11350 | 100 | Plus |
MCPH1.b | 3626 | MCPH1.b | 7..308 | 1..302 | 1510 | 100 | Plus |
MCPH1.a | 2997 | MCPH1.a | 1..224 | 79..302 | 1120 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 7784113..7785750 | 2836..1199 | 8190 | 100 | Minus |
chr2R | 21145070 | chr2R | 7790859..7791160 | 302..1 | 1510 | 100 | Minus |
chr2R | 21145070 | chr2R | 7790447..7790695 | 549..301 | 1245 | 100 | Minus |
chr2R | 21145070 | chr2R | 7789901..7790122 | 771..550 | 1110 | 100 | Minus |
chr2R | 21145070 | chr2R | 7789640..7789833 | 964..771 | 970 | 100 | Minus |
chr2R | 21145070 | chr2R | 7786190..7786334 | 1108..964 | 725 | 100 | Minus |
chr2R | 21145070 | chr2R | 7785817..7785911 | 1201..1107 | 475 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 11896840..11898479 | 2838..1199 | 8200 | 100 | Minus |
2R | 25286936 | 2R | 11903581..11903882 | 302..1 | 1510 | 100 | Minus |
2R | 25286936 | 2R | 11903165..11903413 | 549..301 | 1245 | 100 | Minus |
2R | 25286936 | 2R | 11902619..11902840 | 771..550 | 1110 | 100 | Minus |
2R | 25286936 | 2R | 11902358..11902551 | 964..771 | 970 | 100 | Minus |
2R | 25286936 | 2R | 11898919..11899063 | 1108..964 | 725 | 100 | Minus |
2R | 25286936 | 2R | 11898546..11898640 | 1201..1107 | 475 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 11898039..11899678 | 2838..1199 | 8200 | 100 | Minus |
2R | 25260384 | 2R | 11904780..11905081 | 302..1 | 1510 | 100 | Minus |
2R | 25260384 | 2R | 11904364..11904612 | 549..301 | 1245 | 100 | Minus |
2R | 25260384 | 2R | 11903818..11904039 | 771..550 | 1110 | 100 | Minus |
2R | 25260384 | 2R | 11903557..11903750 | 964..771 | 970 | 100 | Minus |
2R | 25260384 | 2R | 11900118..11900262 | 1108..964 | 725 | 100 | Minus |
2R | 25260384 | 2R | 11899745..11899839 | 1201..1107 | 475 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 7784113..7785748 | 1201..2836 | 100 | <- | Minus |
chr2R | 7785818..7785909 | 1109..1200 | 100 | <- | Minus |
chr2R | 7786190..7786333 | 965..1108 | 100 | <- | Minus |
chr2R | 7789640..7789832 | 772..964 | 100 | <- | Minus |
chr2R | 7789901..7790122 | 550..771 | 100 | <- | Minus |
chr2R | 7790447..7790693 | 303..549 | 100 | <- | Minus |
chr2R | 7790859..7791160 | 1..302 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MCPH1-RB | 1..2481 | 110..2590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MCPH1-RB | 1..2481 | 110..2590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MCPH1-RB | 1..2481 | 110..2590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MCPH1-RB | 1..2481 | 110..2590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MCPH1-RB | 1..2481 | 110..2590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MCPH1-RB | 1..2836 | 1..2836 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MCPH1-RB | 43..2878 | 1..2836 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MCPH1-RB | 37..2872 | 1..2836 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MCPH1-RB | 1..2836 | 1..2836 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MCPH1-RB | 37..2872 | 1..2836 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11903581..11903882 | 1..302 | 100 | Minus | |
2R | 11896842..11898477 | 1201..2836 | 100 | <- | Minus |
2R | 11898547..11898638 | 1109..1200 | 100 | <- | Minus |
2R | 11898919..11899062 | 965..1108 | 100 | <- | Minus |
2R | 11902358..11902550 | 772..964 | 100 | <- | Minus |
2R | 11902619..11902840 | 550..771 | 100 | <- | Minus |
2R | 11903165..11903411 | 303..549 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11903581..11903882 | 1..302 | 100 | Minus | |
2R | 11896842..11898477 | 1201..2836 | 100 | <- | Minus |
2R | 11898547..11898638 | 1109..1200 | 100 | <- | Minus |
2R | 11898919..11899062 | 965..1108 | 100 | <- | Minus |
2R | 11902358..11902550 | 772..964 | 100 | <- | Minus |
2R | 11902619..11902840 | 550..771 | 100 | <- | Minus |
2R | 11903165..11903411 | 303..549 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11903581..11903882 | 1..302 | 100 | Minus | |
2R | 11896842..11898477 | 1201..2836 | 100 | <- | Minus |
2R | 11898547..11898638 | 1109..1200 | 100 | <- | Minus |
2R | 11898919..11899062 | 965..1108 | 100 | <- | Minus |
2R | 11902358..11902550 | 772..964 | 100 | <- | Minus |
2R | 11902619..11902840 | 550..771 | 100 | <- | Minus |
2R | 11903165..11903411 | 303..549 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 7784347..7785982 | 1201..2836 | 100 | <- | Minus |
arm_2R | 7786052..7786143 | 1109..1200 | 100 | <- | Minus |
arm_2R | 7786424..7786567 | 965..1108 | 100 | <- | Minus |
arm_2R | 7789863..7790055 | 772..964 | 100 | <- | Minus |
arm_2R | 7790124..7790345 | 550..771 | 100 | <- | Minus |
arm_2R | 7790670..7790916 | 303..549 | 100 | <- | Minus |
arm_2R | 7791086..7791387 | 1..302 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11898041..11899676 | 1201..2836 | 100 | <- | Minus |
2R | 11899746..11899837 | 1109..1200 | 100 | <- | Minus |
2R | 11900118..11900261 | 965..1108 | 100 | <- | Minus |
2R | 11903557..11903749 | 772..964 | 100 | <- | Minus |
2R | 11903818..11904039 | 550..771 | 100 | <- | Minus |
2R | 11904364..11904610 | 303..549 | 100 | <- | Minus |
2R | 11904780..11905081 | 1..302 | 100 | Minus |
Translation from 109 to 2589
> LD43341.pep MDKFLLRNPTWKTKTYGSVVASSAAAAKKTAASSTRRPLHDSNLGDFRSK AAAPSPKSLSQAPADDQAARDRLMLKPALAVSKAISQHRSEFHQDENEAG AEGSAAKPDPPIGAATPTRQEGHWARLQQDLNSPNAALRLRAIRALKSPT KSAYNTFDVPLAEQSIITMEERNPQEPPSLPELLKDIVVYVEVRTGNDNR SEGVKSIIAKMGAQVKDRLTRTTTHVVFKDGLLSTYKKATEWNIPVVSIL WIEACKVQLKICDPKQFPISNIRMYEYPELFGKMPRVKFMQPDSELNQRP RKRQGTPTSSKDNEPGSTNKRAQTGTPTTTTPKNDISRFFRAINHNKPSD DEAIESPATKLLNRISSGCYTPLPAGGTPQLMGTNGSGDAVAQKVQAQKS LQFGEQTDSNTPQAKPSSTSRPRRSTVDPPPVMTPPVRTTRRRSCVAEIS SPAATDTRMTRRRSSLLTSTVIHEADPTQTAVAEPRMTRRRSSLLGIAKQ AEETAQRQTIQPITEELAPVEENRNSIIMAETNIINNTNCLEQSIEITAV EAEASFKADRRGTLYASELMDISSPRRRSVAKSSLELRQENLAPRARQSL SNVTTQTSFLDVEQQVTPLFSSTRLPTGQTTGNRRRTIFNMDMDVINESI ERMNQSHRMSLALANKAELGESCQVHEQEPPQAEPVPSQEPKRRRLFNPN DEVVISPAMSNRKSRLSITGSGSSSSVQKRRRSLATPAKSSSSELCATTP LSKAVTNKEAEKSKSNTEISEASLDAVPEVKKSTSNAGEENEKPKGKSRT RIRTLVHTNMHQEQINVIRKVGNTTE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11801-PA | 823 | GF11801-PA | 1..823 | 1..826 | 2276 | 58.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22621-PA | 813 | GG22621-PA | 1..813 | 1..826 | 3309 | 81.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20404-PA | 965 | GH20404-PA | 29..757 | 117..820 | 1211 | 43.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MCPH1-PB | 826 | CG8981-PB | 1..826 | 1..826 | 4176 | 100 | Plus |
MCPH1-PD | 1028 | CG42572-PD | 1..820 | 1..820 | 4145 | 100 | Plus |
MCPH1-PA | 779 | CG8981-PA | 18..779 | 65..826 | 3855 | 100 | Plus |
MCPH1-PC | 981 | CG42572-PC | 18..773 | 65..820 | 3824 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19591-PA | 742 | GI19591-PA | 7..739 | 118..825 | 1240 | 42.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10243-PA | 659 | GL10243-PA | 1..659 | 1..573 | 1241 | 44.2 | Plus |
Dper\GL10244-PA | 378 | GL10244-PA | 1..174 | 643..820 | 326 | 46.2 | Plus |
Dper\GL14362-PA | 103 | GL14362-PA | 52..98 | 125..171 | 152 | 63.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24135-PA | 879 | GA24135-PA | 1..874 | 1..826 | 1728 | 46.9 | Plus |
Dpse\GA22992-PA | 103 | GA22992-PA | 52..98 | 125..171 | 148 | 61.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20401-PA | 822 | GM20401-PA | 1..822 | 1..826 | 3874 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25875-PA | 822 | GD25875-PA | 1..822 | 1..826 | 3892 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18380-PA | 765 | GJ18380-PA | 7..761 | 100..824 | 1366 | 46 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22251-PA | 1150 | GK22251-PA | 1..940 | 1..820 | 1480 | 44.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13490-PA | 810 | GE13490-PA | 1..810 | 1..826 | 3604 | 84.7 | Plus |
Translation from 109 to 2589
> LD43341.hyp MDKFLLRNPTWKTKTYGSVVASSAAAAKKTAASSTRRPLHDSNLGDFRSK AAAPSPKSLSQAPADDQAARDRLMLKPALAVSKAISQHRSEFHQDENEAG AEGSAAKPDPPIGAATPTRQEGHWARLQQDLNSPNAALRLRAIRALKSPT KSAYNTFDVPLAEQSIITMEERNPQEPPSLPELLKDIVVYVEVRTGNDNR SEGVKSIIAKMGAQVKDRLTRTTTHVVFKDGLLSTYKKATEWNIPVVSIL WIEACKVQLKICDPKQFPISNIRMYEYPELFGKMPRVKFMQPDSELNQRP RKRQGTPTSSKDNEPGSTNKRAQTGTPTTTTPKNDISRFFRAINHNKPSD DEAIESPATKLLNRISSGCYTPLPAGGTPQLMGTNGSGDAVAQKVQAQKS LQFGEQTDSNTPQAKPSSTSRPRRSTVDPPPVMTPPVRTTRRRSCVAEIS SPAATDTRMTRRRSSLLTSTVIHEADPTQTAVAEPRMTRRRSSLLGIAKQ AEETAQRQTIQPITEELAPVEENRNSIIMAETNIINNTNCLEQSIEITAV EAEASFKADRRGTLYASELMDISSPRRRSVAKSSLELRQENLAPRARQSL SNVTTQTSFLDVEQQVTPLFSSTRLPTGQTTGNRRRTIFNMDMDVINESI ERMNQSHRMSLALANKAELGESCQVHEQEPPQAEPVPSQEPKRRRLFNPN DEVVISPAMSNRKSRLSITGSGSSSSVQKRRRSLATPAKSSSSELCATTP LSKAVTNKEAEKSKSNTEISEASLDAVPEVKKSTSNAGEENEKPKGKSRT RIRTLVHTNMHQEQINVIRKVGNTTE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MCPH1-PB | 826 | CG8981-PB | 1..826 | 1..826 | 4176 | 100 | Plus |
MCPH1-PD | 1028 | CG42572-PD | 1..820 | 1..820 | 4145 | 100 | Plus |
MCPH1-PA | 779 | CG8981-PA | 18..779 | 65..826 | 3855 | 100 | Plus |
MCPH1-PC | 981 | CG42572-PC | 18..773 | 65..820 | 3824 | 100 | Plus |