Clone LD43412 Report

Search the DGRC for LD43412

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:434
Well:12
Vector:pOT2
Associated Gene/TranscriptCG18870-RA
Protein status:LD43412.pep: gold
Preliminary Size:2181
Sequenced Size:1983

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18870 2001-01-01 Release 2 assignment
CG18870 2002-06-01 Blastp of sequenced clone
CG18870 2003-01-01 Sim4 clustering to Release 3
CG18870 2008-04-29 Release 5.5 accounting
CG18870 2008-08-15 Release 5.9 accounting
CG18870 2008-12-18 5.12 accounting

Clone Sequence Records

LD43412.complete Sequence

1983 bp (1983 high quality bases) assembled on 2002-06-01

GenBank Submission: AY118577

> LD43412.complete
CAATAAACAAATTTCTAACTTATTTTGCAACAAATGCAAACGCTGAGAAT
CTAGCTGGACACAGTCGCGTGGGAACAGCAAGGATACACGCAGGACGTGA
GGACGCGCGAAAAGTCAGGTGCCGACATGTTGGTCAAGTGCTGCATCGGA
TTTGGGTCACTCTGGCCACTGGCCATGATGGTGGCCTTTTGCACTGCCTA
CAAGAACGTTCGTCTCCAGGACAACATGTGCTCGGACAAACTGTTCTACA
CGCTGGCCAAGCCGTTCCGTGGCGATCCGACTGTGCGGCTGGAGTTCGAG
GACACCTCCGGAGCGATCGTGACGCAGATGTGGAATTTGACACTGCCCCA
CGGCCATACGGCCAACAAGATTAAGTACGATTGCCAGTTTAGGGTGGTGA
CCAGCGAGCGACCGCGACGCGGCATTTACACTATCATTACGCGGCTTAAG
TTTCGGCGCGACCCCGTTTCCAAGGAGTGCATCGACTACATTCAGTTCAG
CAGCGGCAATCGCTCGCCCAGCGAACGCATTTGCACGGACATCTCCATTG
ATGGCCCGGCGGGACGTCTGATCTTCGATCAGCGTGATCGCGACGTCAAC
GTGCACATATTTATCGATCGATCGCGTCATATACTAGGCGATCCCCTGGA
GCTGCGCATGGTGCTAACGGCACACTCGGAGTGCCAGTTTAATGGAGACT
TCCTTTGCGAGCCCAACGACCAGTACTCGTGCATTTCGCGTCATTTTGTG
CGGGACAATATCACCAATTGCCTGTATCCGTGCCGCGACGAGGGCACCTG
CTTTCACGACGCCATTGTGCCGGAGATCGATACGGCCAATGTGGCTATAT
CGGCGCTGACCTCGCTCATCTTTACCATGGTGGGCGTGGGTTTTTGTGTG
TGGATCTGCTGGAAGTATTGGAACTGCATAACGGTGCAGCAACGGGCGCA
CGAAGCCTCCGCTGCCCGCTTCAATCAGCGTCGAGTCAGATCGGATGTGC
CCACCATTGAGCTGCCACCATCGGTGCACTACGATGATAGCGTCCTGCAC
GAGCACGATACCCAGCAGCAACAGCAACCCGCCACGCCAAAGGATCTACC
GCCCAGCTATGAGTCCCTGTTCCCGGAAAGATAAAGATCCGCGACGGGTG
TCGCTCCGCTTTGTGCCAGATCAGCAAGTACTTGGTATCGCACACTTGTT
GTATTAGTCCTATTAGGTAATTGTATCTCTATCTGAACCGTTCAGCAATC
CATGTAAATATGTTAGGACTGATTTTATGTTTTGAGATTAGCATTAGCGA
TCAAACATCTTTCTCGATGTGTTCACTTTGAACCAAATTCCAGAATACAC
TCCCCGAGAATTTCCACAGTTTTACTGTTGTACATATATATAAGTTTTAT
ATTGTTCCACTCTCCGTATTATTTGATTAACTGTATTGTAATTGTTAAAA
GCGCCCTTTTGGCGAATGCAAATTGTTTACTCACTGATGAAATCTCACTG
GTATTACCATACTCAATGAAATTATATCAATTATTTACCTAAGCATCAAT
TATTTATAAGCAAAAGCGAAAGCCACACAGTACTAGTCTCTATATTAGCT
AGCGTAAATATTCCAAGGGCCAGCCAAGACTGGGCCGAGCATTCCACATA
GTTGTACCTGTTTCTGTACTGCATAGATATGTATATGTTATGTATTTGTA
CGCATAGAATACCACGCGCTTGTAGATGTCATTGTTGTGTGCTGGCCGAA
AGTGTCAATTGTTCAATTTCGAGTATAAGATGTAGGCGCATACGCTCACA
AGATAATGTACGAACTACAGTATTTACTCCACACATGTAACTGCAATGTA
ACTGAAAGTTCGGGCTAGTGGTCAGTAGGTCTTAAGCCAATTAACTCATA
TGTATACACACGCAACTCACTCAAATACGTATATTAACTGATAAATAAAC
CAACTAAATCTCAGCAAAAAAAAAAAAAAAAAA

LD43412.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG18870-RA 2330 CG18870-RA 111..2076 1..1966 9830 100 Plus
CG18870.a 2579 CG18870.a 41..2006 1..1966 9830 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17501172..17502146 1965..991 4875 100 Minus
chr2R 21145070 chr2R 17502214..17502996 990..208 3915 100 Minus
chr2R 21145070 chr2R 17503055..17503262 208..1 1040 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21614762..21615737 1966..991 4880 100 Minus
2R 25286936 2R 21615805..21616587 990..208 3915 100 Minus
2R 25286936 2R 21616646..21616853 208..1 1040 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21615961..21616936 1966..991 4880 100 Minus
2R 25260384 2R 21617004..21617786 990..208 3915 100 Minus
2R 25260384 2R 21617845..21618052 208..1 1040 100 Minus
Blast to na_te.dros performed 2019-03-16 11:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 76..205 1485..1361 124 59.5 Minus

LD43412.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:06:27 Download gff for LD43412.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17501172..17502146 991..1965 100 <- Minus
chr2R 17502214..17502995 209..990 100 <- Minus
chr2R 17503055..17503262 1..208 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:01 Download gff for LD43412.complete
Subject Subject Range Query Range Percent Splice Strand
CG18870-RA 1..1008 127..1134 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:33:12 Download gff for LD43412.complete
Subject Subject Range Query Range Percent Splice Strand
CG18870-RA 1..1008 127..1134 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:51:38 Download gff for LD43412.complete
Subject Subject Range Query Range Percent Splice Strand
CG18870-RA 1..1008 127..1134 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:24:43 Download gff for LD43412.complete
Subject Subject Range Query Range Percent Splice Strand
CG18870-RA 1..1008 127..1134 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:42 Download gff for LD43412.complete
Subject Subject Range Query Range Percent Splice Strand
CG18870-RA 1..1008 127..1134 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:04:01 Download gff for LD43412.complete
Subject Subject Range Query Range Percent Splice Strand
CG18870-RA 41..2005 1..1965 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:33:12 Download gff for LD43412.complete
Subject Subject Range Query Range Percent Splice Strand
CG18870-RA 41..2005 1..1965 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:51:38 Download gff for LD43412.complete
Subject Subject Range Query Range Percent Splice Strand
CG18870-RA 55..2019 1..1965 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:24:43 Download gff for LD43412.complete
Subject Subject Range Query Range Percent Splice Strand
CG18870-RA 15..1979 1..1965 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:42 Download gff for LD43412.complete
Subject Subject Range Query Range Percent Splice Strand
CG18870-RA 55..2019 1..1965 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:06:27 Download gff for LD43412.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21614763..21615737 991..1965 100 <- Minus
2R 21615805..21616586 209..990 100 <- Minus
2R 21616646..21616853 1..208 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:06:27 Download gff for LD43412.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21614763..21615737 991..1965 100 <- Minus
2R 21615805..21616586 209..990 100 <- Minus
2R 21616646..21616853 1..208 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:06:27 Download gff for LD43412.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21614763..21615737 991..1965 100 <- Minus
2R 21615805..21616586 209..990 100 <- Minus
2R 21616646..21616853 1..208 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:51:38 Download gff for LD43412.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17502268..17503242 991..1965 100 <- Minus
arm_2R 17503310..17504091 209..990 100 <- Minus
arm_2R 17504151..17504358 1..208 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:57:14 Download gff for LD43412.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21615962..21616936 991..1965 100 <- Minus
2R 21617004..21617785 209..990 100 <- Minus
2R 21617845..21618052 1..208 100   Minus

LD43412.pep Sequence

Translation from 126 to 1133

> LD43412.pep
MLVKCCIGFGSLWPLAMMVAFCTAYKNVRLQDNMCSDKLFYTLAKPFRGD
PTVRLEFEDTSGAIVTQMWNLTLPHGHTANKIKYDCQFRVVTSERPRRGI
YTIITRLKFRRDPVSKECIDYIQFSSGNRSPSERICTDISIDGPAGRLIF
DQRDRDVNVHIFIDRSRHILGDPLELRMVLTAHSECQFNGDFLCEPNDQY
SCISRHFVRDNITNCLYPCRDEGTCFHDAIVPEIDTANVAISALTSLIFT
MVGVGFCVWICWKYWNCITVQQRAHEASAARFNQRRVRSDVPTIELPPSV
HYDDSVLHEHDTQQQQQPATPKDLPPSYESLFPER*

LD43412.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12086-PA 332 GF12086-PA 1..332 2..335 1547 85.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20763-PA 335 GG20763-PA 1..335 1..335 1764 97.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20048-PA 356 GH20048-PA 8..356 11..335 1327 75.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG18870-PB 335 CG18870-PB 1..335 1..335 1824 100 Plus
CG18870-PA 335 CG18870-PA 1..335 1..335 1824 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20457-PA 345 GI20457-PA 1..345 2..335 1316 72.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17483-PA 343 GL17483-PA 14..343 11..335 1463 85.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15108-PA 343 GA15108-PA 14..343 11..335 1463 85.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15706-PA 335 GM15706-PA 1..335 1..335 1779 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25184-PA 335 GD25184-PA 1..335 1..335 1786 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22307-PA 342 GJ22307-PA 8..342 11..335 1386 78.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22255-PA 329 GK22255-PA 5..329 12..335 1373 77.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13695-PA 335 GE13695-PA 1..335 1..335 1773 98.2 Plus

LD43412.hyp Sequence

Translation from 126 to 1133

> LD43412.hyp
MLVKCCIGFGSLWPLAMMVAFCTAYKNVRLQDNMCSDKLFYTLAKPFRGD
PTVRLEFEDTSGAIVTQMWNLTLPHGHTANKIKYDCQFRVVTSERPRRGI
YTIITRLKFRRDPVSKECIDYIQFSSGNRSPSERICTDISIDGPAGRLIF
DQRDRDVNVHIFIDRSRHILGDPLELRMVLTAHSECQFNGDFLCEPNDQY
SCISRHFVRDNITNCLYPCRDEGTCFHDAIVPEIDTANVAISALTSLIFT
MVGVGFCVWICWKYWNCITVQQRAHEASAARFNQRRVRSDVPTIELPPSV
HYDDSVLHEHDTQQQQQPATPKDLPPSYESLFPER*

LD43412.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG18870-PB 335 CG18870-PB 1..335 1..335 1824 100 Plus
CG18870-PA 335 CG18870-PA 1..335 1..335 1824 100 Plus