Clone LD43495 Report

Search the DGRC for LD43495

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:434
Well:95
Vector:pOT2
Associated Gene/TranscriptHem-RA
Protein status:LD43495.pep: gold
Preliminary Size:3613
Sequenced Size:3782

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5837 2001-01-01 Release 2 assignment
CG5837 2002-05-17 Blastp of sequenced clone
CG5837 2003-01-01 Sim4 clustering to Release 3
Hem 2008-04-29 Release 5.5 accounting
Hem 2008-08-15 Release 5.9 accounting
Hem 2008-12-18 5.12 accounting

Clone Sequence Records

LD43495.complete Sequence

3782 bp (3782 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118579

> LD43495.complete
CGAAAACAAGAGGAAGAGTAATGTGTACACTTTTGTGTCGCTCCTTTTCG
GCCAATTTAACAAACGAAAAAGTATAAGTACTGGGCAAATCAGCACTTGC
ACGCCTCCCAATACGTCTCGCCAGCGCACACCTGTGTTCTGGGCTCCACC
GGAAACTCGCCTTCAGCCATTCGACGTCGCCAACAGTCATCGGATATGGC
ACGCCCAATTTTTCCGAACCAGCAGAAGATAGCTGAGAAACTAATCATCT
TGAATGACCGCGGCCTGGGCATTCTTACGCGGATATACAACATCAAGAAA
GCATGCGGCGACACCAAGTCGAAGCCAGGCTTCCTCTCCGAGAAGTCGTT
GGAATCGAGCATCAAGTTTATCGTGAAGCGGTTCCCCAACATCGACGTCA
AAGGGCTCAATGCTATTGTAAACATCAAAGCGGAGATTATTAAGTCGCTG
TCCCTGTATTACCACACATTCGTGGACCTACTTGATTTCAAGGACAATGT
ATGCGAACTGCTCACCACGATGGACGCCTGCCAGATTCACCTGGACATCA
CATTGAACTTCGAGCTGACCAAATATTATCTGGACTTGGTTGTGACCTAC
GTGTCCTTGATGATTGTTTTGTCTAGGGTCGAGGACCGCAAGGCAGTTCT
GGGCTTGTACAATGCCGCCTACGAGCTGCAAAACAATCAGGCGGACACGG
GCTTCCCCCGCTTGGGGCAGATGATTCTGGACTACGAGGTCCCCTTAAAA
AAGTTGGCCGAGGAATTCATTCCCCACCAGCGCCTGCTAACCAGTGCGTT
GCGGTCGCTGACCTCCATCTATGCACTGCGAAACCTGCCAGCAGACAAGT
GGAGGGAAATGCAAAAGTTGAGTCTGGTAGGCAATCCGGCCATTCTTCTT
AAGGCCGTCCGCACTGACACCATGTCCTGCGAGTACATATCCCTGGAGGC
AATGGACCGCTGGATAATCTTTGGCTTGCTGCTGAACCATCAAATGCTCG
GACAGTACCCGGAAGTCAACAAAATCTGGCTCTCCGCCCTGGAGTCAAGC
TGGGTTGTGGCCTTGTTCCGCGACGAGGTCCTGCAAATTCATCAATACAT
TCAGGCTACTTTCGACGGAATTAAAGGTTACAGCAAGCGGATCGGAGAAG
TAAAGGAAGCCTACAACACGGCGGTTCAAAAAGCTGCTTTAATGCATCGG
GAGCGGCGCAAGTTTCTTCGAACAGCCTTGAAGGAGCTAGCTCTTATTAT
GACCGACCAACCAGGCCTCCTGGGACCTAAGGCAATATTCATTTTCATCG
GTCTTTGTCTTGCGCGCGATGAGATTCTATGGCTCCTCAGGCATAATGAC
AACCCACCTCTTCTCAAAAATAAAGGAAAGAGCAATGAAGATCTTGTAGA
CCGACAGCTGCCGGAGCTCTTATTCCACATGGAGGAACTCCGCGCTCTTG
TGCGTAAATACAGCCAGGTAATGCAGCGATATTACGTGCAATACTTGTCC
GGATTCGATGCCACGGATCTTAATATTCGAATGCAAAGTCTGCAAATGTG
TCCAGAAGACGAAAGCATAATCTTCAGTTCGCTCTACAACACGGCTGCAG
CCCTGACAGTTAAGCAGGTGGAAGACAACGAACTCTTTTATTTCCGACCA
TTCCGCCTGGACTGGTTCCGCCTCCAAACGTACATGAGTGTGGGAAAGGC
TGCACTTAGGATCGCAGAGCATGCAGAGCTGGCCCGCCTACTGGATTCAA
TGGTTTTCCACACTAGGGTGGTAGATAACTTGGACGAAATACTAGTAGAA
ACCTCGGATCTCAGTATCTTCTGTTTCTATAACAAAATGTTTGACGACCA
ATTCCACATGTGCTTGGAGTTTCCCGCGCAGAACCGCTACATCATAGCGT
TTCCCTTAATCTGCAGCCACTTCCAAAATTGTACGCACGAAATGTGCCCG
GAGGAGCGACACCATATACGTGAAAGGTCTCTCAGCGTGGTAAATATATT
TCTTGAGGAAATGGCTAAGGAGGCTAAAAACATTATAACCACAATTTGCG
ATGAGCAGTGCACAATGGCAGACGCTCTATTGCCAAAACACTGTGCTAAG
ATTCTTTCCGTACAATCTGCTCGTAAGAAGAAGGACAAATCGAAGTCTAA
GCATTTTGACGACATACGAAAGCCGGGAGACGAGTCGTACCGAAAGACAC
GAGAGGATCTGACGACGATGGACAAGTTGCACATGGCCCTGACGGAGCTT
TGTTTTGCAATCAATTATTGCCCCACGGTCAACGTTTGGGAGTTTGCTTT
TGCCCCTCGCGAGTATCTCTGTCAGAACCTGGAACACCGCTTTTCCCGGG
ATCTTGTTGGCATGGTGATGTTCAACCAGGAGACAATGGAGATAGCCAAG
CCCTCGGAGCTGCTGGCCAGCGTTCGAGCCTACATGAACGTGCTGCAGAC
AGTAGAGAACTACGTGCACATAGACATAACACGAGTTTTCAACAACTGCC
TGTTGCAGCAAACACAGGCTTTAGACTCTCATGGCGAGAAAACCATTGCC
GCTTTGTACAACACCTGGTACAGTGAGGTTCTGCTAAGGCGTGTCTCCGC
TGGCAACATTGTGTTCTCCATTAACCAAAAGGCTTTTGTTCCCATTTCGC
CCGAGGGCTGGGTACCATTTAACCCGCAGGAATTCTCTGATCTCAACGAG
CTGCGAGCACTTGCAGAACTTGTGGGACCTTACGGTATCAAAACATTGAA
CGAAACACTTATGTGGCACATAGCAAACCAGGTGCAAGAGTTGAAGTCGC
TGGTGAGCACCAACAAGGAAGTGCTCATTACACTGCGAACCAGTTTTGAC
AAACCTGAAGTGATGAAGGAGCAATTTAAGCGCTTACAGGACGTGGACCG
CGTGCTGCAACGCATGACGATCATTGGTGTGATCATATGTTTCCGCAACC
TGGTGCATGAAGCCCTCGTTGATGTGCTGGACAAGCGCATACCCTTCCTG
CTTAGCTCAGTGAAGGACTTTCAGGAACATTTGCCCGGAGGCGACCAAAT
TAGGGTTGCTTCCGAGATGGCCTCAGCAGCGGGTCTGCTATGCAAGGTAG
ACCCCACATTAGCAACTACACTGAAATCAAAAAAGCCAGAATTCGATGAG
GGTGAGCACCTCACTGCCTGTCTACTGATGGTCTTTGTGGCAGTGTCTAT
ACCAAAACTGGCCCGTAACGAAAATTCCTTCTACAGAGCCACAATTGATG
GCCACTCAAATAACACGCACTGCATGGCGGCGGCCATTAATAACATCTTC
GGAGCCCTGTTTACCATCTGCGGTCAAAGTGACATGGAGGACCGCATGAA
AGAGTTCCTTGCTCTGGCCAGTTCTTCCCTACTGCGCTTGGGCCAGGAGT
CCGACAAAGAGGCGACACGGAACCGAGAGTCCATCTATTTGCTGCTGGAC
GAAATCGTCAAACAATCGCCCTTCCTCACAATGGATCTGCTTGAGTCCTG
CTTTCCCTACGTGCTTATACGCAACGCGTACCATGGCGTATACAAGCAGG
AACAGATCTTAGGGCTGGCACTCTAAATGGAGCCGATCTGTGTATTCCAC
ATAATGCTTATGTAGTTTATCCGCCGATCGACTATCGATCACTATGCTAA
TCTAACATACTTTAAAACTGTTAAACATACCCAAATGTATTCTAGACTCT
GCATTTTTATACTCGTACGACTTCGAATAAAGTGCTTATACAACCCAAAT
AAGTATCCCACATTAAAAAAAAAAAAAAAAAA

LD43495.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Hem-RA 3892 Hem-RA 75..3840 1..3766 18830 100 Plus
CG11489-RD 6827 CG11489-RD 6777..6827 3766..3716 255 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 22273269..22275659 3764..1374 11955 100 Minus
chr3L 24539361 chr3L 22275722..22277097 1376..1 6880 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22284352..22286744 3766..1374 11965 100 Minus
3L 28110227 3L 22286807..22288182 1376..1 6880 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 22277452..22279844 3766..1374 11965 100 Minus
3L 28103327 3L 22279907..22281282 1376..1 6880 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:48:37 has no hits.

LD43495.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:49:17 Download gff for LD43495.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 22273269..22275657 1376..3764 100 <- Minus
chr3L 22275723..22277097 1..1375 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:05 Download gff for LD43495.complete
Subject Subject Range Query Range Percent Splice Strand
Hem-RA 1..3381 196..3576 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:48:46 Download gff for LD43495.complete
Subject Subject Range Query Range Percent Splice Strand
Hem-RA 1..3381 196..3576 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:13:29 Download gff for LD43495.complete
Subject Subject Range Query Range Percent Splice Strand
Hem-RA 1..3381 196..3576 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:41:18 Download gff for LD43495.complete
Subject Subject Range Query Range Percent Splice Strand
Hem-RA 1..3381 196..3576 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:41:49 Download gff for LD43495.complete
Subject Subject Range Query Range Percent Splice Strand
Hem-RA 1..3381 196..3576 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:25:32 Download gff for LD43495.complete
Subject Subject Range Query Range Percent Splice Strand
Hem-RA 11..3774 1..3764 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:48:46 Download gff for LD43495.complete
Subject Subject Range Query Range Percent Splice Strand
Hem-RA 18..3781 1..3764 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:13:29 Download gff for LD43495.complete
Subject Subject Range Query Range Percent Splice Strand
Hem-RA 14..3777 1..3764 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:41:18 Download gff for LD43495.complete
Subject Subject Range Query Range Percent Splice Strand
Hem-RA 11..3774 1..3764 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:41:49 Download gff for LD43495.complete
Subject Subject Range Query Range Percent Splice Strand
Hem-RA 14..3777 1..3764 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:49:17 Download gff for LD43495.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22284354..22286742 1376..3764 100 <- Minus
3L 22286808..22288182 1..1375 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:49:17 Download gff for LD43495.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22284354..22286742 1376..3764 100 <- Minus
3L 22286808..22288182 1..1375 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:49:17 Download gff for LD43495.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22284354..22286742 1376..3764 100 <- Minus
3L 22286808..22288182 1..1375 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:13:29 Download gff for LD43495.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22277454..22279842 1376..3764 100 <- Minus
arm_3L 22279908..22281282 1..1375 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:13:37 Download gff for LD43495.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22277454..22279842 1376..3764 100 <- Minus
3L 22279908..22281282 1..1375 100   Minus

LD43495.pep Sequence

Translation from 195 to 3575

> LD43495.pep
MARPIFPNQQKIAEKLIILNDRGLGILTRIYNIKKACGDTKSKPGFLSEK
SLESSIKFIVKRFPNIDVKGLNAIVNIKAEIIKSLSLYYHTFVDLLDFKD
NVCELLTTMDACQIHLDITLNFELTKYYLDLVVTYVSLMIVLSRVEDRKA
VLGLYNAAYELQNNQADTGFPRLGQMILDYEVPLKKLAEEFIPHQRLLTS
ALRSLTSIYALRNLPADKWREMQKLSLVGNPAILLKAVRTDTMSCEYISL
EAMDRWIIFGLLLNHQMLGQYPEVNKIWLSALESSWVVALFRDEVLQIHQ
YIQATFDGIKGYSKRIGEVKEAYNTAVQKAALMHRERRKFLRTALKELAL
IMTDQPGLLGPKAIFIFIGLCLARDEILWLLRHNDNPPLLKNKGKSNEDL
VDRQLPELLFHMEELRALVRKYSQVMQRYYVQYLSGFDATDLNIRMQSLQ
MCPEDESIIFSSLYNTAAALTVKQVEDNELFYFRPFRLDWFRLQTYMSVG
KAALRIAEHAELARLLDSMVFHTRVVDNLDEILVETSDLSIFCFYNKMFD
DQFHMCLEFPAQNRYIIAFPLICSHFQNCTHEMCPEERHHIRERSLSVVN
IFLEEMAKEAKNIITTICDEQCTMADALLPKHCAKILSVQSARKKKDKSK
SKHFDDIRKPGDESYRKTREDLTTMDKLHMALTELCFAINYCPTVNVWEF
AFAPREYLCQNLEHRFSRDLVGMVMFNQETMEIAKPSELLASVRAYMNVL
QTVENYVHIDITRVFNNCLLQQTQALDSHGEKTIAALYNTWYSEVLLRRV
SAGNIVFSINQKAFVPISPEGWVPFNPQEFSDLNELRALAELVGPYGIKT
LNETLMWHIANQVQELKSLVSTNKEVLITLRTSFDKPEVMKEQFKRLQDV
DRVLQRMTIIGVIICFRNLVHEALVDVLDKRIPFLLSSVKDFQEHLPGGD
QIRVASEMASAAGLLCKVDPTLATTLKSKKPEFDEGEHLTACLLMVFVAV
SIPKLARNENSFYRATIDGHSNNTHCMAAAINNIFGALFTICGQSDMEDR
MKEFLALASSSLLRLGQESDKEATRNRESIYLLLDEIVKQSPFLTMDLLE
SCFPYVLIRNAYHGVYKQEQILGLAL*

LD43495.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23466-PA 1126 GF23466-PA 1..1126 1..1126 5966 98.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13184-PA 1126 GG13184-PA 1..1126 1..1126 6052 99.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14818-PA 1126 GH14818-PA 1..1126 1..1126 5980 98.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
Hem-PA 1126 CG5837-PA 1..1126 1..1126 5791 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13924-PA 1126 GI13924-PA 1..1126 1..1126 5972 98.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20745-PA 1124 GL20745-PA 1..1124 1..1124 5984 98.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19168-PA 1124 GA19168-PA 1..1124 1..1124 5984 98.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22095-PA 1126 GM22095-PA 1..1126 1..1126 6050 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Hem-PA 1126 GD12071-PA 1..1126 1..1126 6057 99.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13713-PA 1126 GJ13713-PA 1..1126 1..1126 5989 98.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17072-PA 1126 GK17072-PA 1..1126 1..1126 5976 98.4 Plus

LD43495.hyp Sequence

Translation from 195 to 3575

> LD43495.hyp
MARPIFPNQQKIAEKLIILNDRGLGILTRIYNIKKACGDTKSKPGFLSEK
SLESSIKFIVKRFPNIDVKGLNAIVNIKAEIIKSLSLYYHTFVDLLDFKD
NVCELLTTMDACQIHLDITLNFELTKYYLDLVVTYVSLMIVLSRVEDRKA
VLGLYNAAYELQNNQADTGFPRLGQMILDYEVPLKKLAEEFIPHQRLLTS
ALRSLTSIYALRNLPADKWREMQKLSLVGNPAILLKAVRTDTMSCEYISL
EAMDRWIIFGLLLNHQMLGQYPEVNKIWLSALESSWVVALFRDEVLQIHQ
YIQATFDGIKGYSKRIGEVKEAYNTAVQKAALMHRERRKFLRTALKELAL
IMTDQPGLLGPKAIFIFIGLCLARDEILWLLRHNDNPPLLKNKGKSNEDL
VDRQLPELLFHMEELRALVRKYSQVMQRYYVQYLSGFDATDLNIRMQSLQ
MCPEDESIIFSSLYNTAAALTVKQVEDNELFYFRPFRLDWFRLQTYMSVG
KAALRIAEHAELARLLDSMVFHTRVVDNLDEILVETSDLSIFCFYNKMFD
DQFHMCLEFPAQNRYIIAFPLICSHFQNCTHEMCPEERHHIRERSLSVVN
IFLEEMAKEAKNIITTICDEQCTMADALLPKHCAKILSVQSARKKKDKSK
SKHFDDIRKPGDESYRKTREDLTTMDKLHMALTELCFAINYCPTVNVWEF
AFAPREYLCQNLEHRFSRDLVGMVMFNQETMEIAKPSELLASVRAYMNVL
QTVENYVHIDITRVFNNCLLQQTQALDSHGEKTIAALYNTWYSEVLLRRV
SAGNIVFSINQKAFVPISPEGWVPFNPQEFSDLNELRALAELVGPYGIKT
LNETLMWHIANQVQELKSLVSTNKEVLITLRTSFDKPEVMKEQFKRLQDV
DRVLQRMTIIGVIICFRNLVHEALVDVLDKRIPFLLSSVKDFQEHLPGGD
QIRVASEMASAAGLLCKVDPTLATTLKSKKPEFDEGEHLTACLLMVFVAV
SIPKLARNENSFYRATIDGHSNNTHCMAAAINNIFGALFTICGQSDMEDR
MKEFLALASSSLLRLGQESDKEATRNRESIYLLLDEIVKQSPFLTMDLLE
SCFPYVLIRNAYHGVYKQEQILGLAL*

LD43495.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
Hem-PA 1126 CG5837-PA 1..1126 1..1126 5791 100 Plus