Clone LD43519 Report

Search the DGRC for LD43519

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:435
Well:19
Vector:pOT2
Associated Gene/Transcriptbc10-RA
Protein status:LD43519.pep: gold
Preliminary Size:1500
Sequenced Size:1367

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4867 2001-01-01 Release 2 assignment
CG4867 2002-06-14 Blastp of sequenced clone
CG4867 2003-01-01 Sim4 clustering to Release 3
bc10 2008-04-29 Release 5.5 accounting
bc10 2008-08-15 Release 5.9 accounting
bc10 2008-12-18 5.12 accounting

Clone Sequence Records

LD43519.complete Sequence

1367 bp (1367 high quality bases) assembled on 2002-06-14

GenBank Submission: AY128448

> LD43519.complete
CAGACAAGTAAATTTTGGTAAATATGTGATGATTTAAAACGACGCACAAC
AAGCGAGCATCTAAACGACCCGAAAATCGAGAGGTCAGCGCCAGGAGGCC
CAATCGGAGGCCGCGCGGAAGACCACGTCAACGCACACGCAAATAGAACC
CAAATCTTAAGCAGAAATAGCAACAACAACACAACCACCCACCCAACCGC
ACACAGAATGTATTGCCTACAATGCCTGCTGCCCGTACTACTGATACCGA
AACCCTCGAATCCGGCCCTGATGGAAACGCACGTGATGTTCATAGTCCTC
TACCTGGTCGGATTCTTCCTGGAGCGAAAGCCCTGCACCATCTGCAGCCT
CGTATTCCTCACAGCCGTATCCCTGATATGCTACAGTGGCGTCGGGAACT
GCATATTTTGGGGCAACTGCGAGGGCCATCAATGTGAGAATGGCTAGAGG
GTCAGCAGTGCGCCGCTTATCTTTCACTCCCACACAAAGAAAGCCCCCGT
AGTCATAGTCAACGAAGATAAAGTGCTAATAATAACTACCTTTTTACGGA
ATTACGTTCGCGTTGTTACAGCTTTACATCCTCGAAGATCGGAGAAAGTC
AGAGGAGCAGGCGGATATAAGGGATTAGGGATAGCTTGACTAAGTCGGTA
AAATCAAGTGATCAGTGATACAAGTGATGAGTGAGTCCGACCAGGAACAA
AGATTGTGTGTCTAGTAATACCCATTGCATTATTTCCAGCCCTCTATATG
TTACCTTCATAATTCTCTTGATTATGAATTGTAATTGTATTGTATGTTTT
GTTTTTAAAGCTTAGACGAATTTAGTTTATACGAAGAAAGCGCTACGAAA
ACGTATTGTACATCACCCCACCCAAAAGCCCTACCCTTCAAATCAAAAGA
AAAAACCCCTATCCAACCCACTTGTCAATGCAACTTACGATTAGTCATAT
ATGTTATATATAGATAAATACATTATACAAAACGTAATTGTAAAGAAAAC
TAAGGCAAACCACACATTCACTGCGCATCCTTGCTGAGTTGCTAAGTTGC
TGAGCCAACGAAAGCTGCTGACATCGGTTGTAATTACCCTGTCGTGTGCA
CGTGCAAAAACTGTATATACAAACAAGCATATAACTTACACCGATCGAAA
TATATAAACATTATATACATAAAATGTAAACGAGAGACAAGCACAAATAT
GTAAAAACGAGGAACGGGCGGGCGATTATAACTTATACAAATAATATTGT
TCGATTTTTGCGAATTTGTATGATTTGAGCGGTATCCAAAAAAACGGAAA
GTGTGGTAGATGTAATGAAATAAAATTTAAATAATGATAAACATCTGCAA
AAAAAAAAAAAAAAAAA

LD43519.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
bc10-RA 1531 bc10-RA 93..1442 1..1350 6750 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5558116..5559356 108..1348 6190 99.9 Plus
chr3L 24539361 chr3L 5557854..5557963 1..110 535 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5565525..5566767 108..1350 6215 100 Plus
3L 28110227 3L 5565263..5565372 1..110 550 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5558625..5559867 108..1350 6215 100 Plus
3L 28103327 3L 5558363..5558472 1..110 550 100 Plus
Blast to na_te.dros performed 2019-03-15 19:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
Circe 7450 Circe CIRC 7450bp 6709..6772 1065..1133 118 68.6 Plus
transib1 2167 transib1 TRANSIB1 2167bp 1875..1938 1008..945 113 64.1 Minus

LD43519.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:48:59 Download gff for LD43519.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5557854..5557962 1..109 99 -> Plus
chr3L 5558118..5559356 110..1348 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:06 Download gff for LD43519.complete
Subject Subject Range Query Range Percent Splice Strand
bc10-RA 1..240 208..447 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:20:17 Download gff for LD43519.complete
Subject Subject Range Query Range Percent Splice Strand
bc10-RA 1..240 208..447 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:02:06 Download gff for LD43519.complete
Subject Subject Range Query Range Percent Splice Strand
bc10-RA 1..240 208..447 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:11:16 Download gff for LD43519.complete
Subject Subject Range Query Range Percent Splice Strand
bc10-RA 1..240 208..447 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:48 Download gff for LD43519.complete
Subject Subject Range Query Range Percent Splice Strand
bc10-RA 1..240 208..447 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:46:00 Download gff for LD43519.complete
Subject Subject Range Query Range Percent Splice Strand
bc10-RA 30..1377 1..1348 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:20:16 Download gff for LD43519.complete
Subject Subject Range Query Range Percent Splice Strand
bc10-RA 30..1377 1..1348 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:06 Download gff for LD43519.complete
Subject Subject Range Query Range Percent Splice Strand
bc10-RA 33..1380 1..1348 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:11:16 Download gff for LD43519.complete
Subject Subject Range Query Range Percent Splice Strand
bc10-RA 30..1376 1..1347 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:48 Download gff for LD43519.complete
Subject Subject Range Query Range Percent Splice Strand
bc10-RA 33..1380 1..1348 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:48:59 Download gff for LD43519.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5565263..5565371 1..109 100 -> Plus
3L 5565527..5566765 110..1348 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:48:59 Download gff for LD43519.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5565263..5565371 1..109 100 -> Plus
3L 5565527..5566765 110..1348 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:48:59 Download gff for LD43519.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5565263..5565371 1..109 100 -> Plus
3L 5565527..5566765 110..1348 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:06 Download gff for LD43519.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5558363..5558471 1..109 100 -> Plus
arm_3L 5558627..5559865 110..1348 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:43:42 Download gff for LD43519.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5558627..5559865 110..1348 100   Plus
3L 5558363..5558471 1..109 100 -> Plus

LD43519.pep Sequence

Translation from 207 to 446

> LD43519.pep
MYCLQCLLPVLLIPKPSNPALMETHVMFIVLYLVGFFLERKPCTICSLVF
LTAVSLICYSGVGNCIFWGNCEGHQCENG*

LD43519.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23982-PA 79 GF23982-PA 1..79 1..79 401 97.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15274-PA 79 GG15274-PA 1..79 1..79 404 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15195-PA 79 GH15195-PA 1..79 1..79 395 96.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
bc10-PA 79 CG4867-PA 1..79 1..79 440 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12132-PA 79 GI12132-PA 1..79 1..79 394 94.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12269-PA 133 GL12269-PA 1..56 1..56 277 96.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18490-PA 79 GA18490-PA 1..79 1..79 402 97.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14708-PA 79 GM14708-PA 1..79 1..79 397 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13890-PA 79 GD13890-PA 1..79 1..79 397 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13408-PA 79 GJ13408-PA 1..79 1..79 396 94.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19267-PA 79 GK19267-PA 1..79 1..79 404 98.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21495-PA 79 GE21495-PA 1..79 1..79 404 98.7 Plus

LD43519.hyp Sequence

Translation from 207 to 446

> LD43519.hyp
MYCLQCLLPVLLIPKPSNPALMETHVMFIVLYLVGFFLERKPCTICSLVF
LTAVSLICYSGVGNCIFWGNCEGHQCENG*

LD43519.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
bc10-PA 79 CG4867-PA 1..79 1..79 440 100 Plus