BDGP Sequence Production Resources |
Search the DGRC for LD43541
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 435 |
Well: | 41 |
Vector: | pOT2 |
Associated Gene/Transcript | Phf7-RA |
Protein status: | LD43541.pep: gold |
Preliminary Size: | 2221 |
Sequenced Size: | 2244 |
Gene | Date | Evidence |
---|---|---|
CG9576 | 2001-01-01 | Release 2 assignment |
CG9576 | 2001-07-04 | Blastp of sequenced clone |
CG9576 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9576 | 2008-04-29 | Release 5.5 accounting |
CG9576 | 2008-08-15 | Release 5.9 accounting |
CG9576 | 2008-12-18 | 5.12 accounting |
2244 bp (2244 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051970
> LD43541.complete CGAAAACAGTCAATCGCTTCTCAATCGGCGAGATTTGTTTTTTTCGGCTG CTGTTGCTGTTTTAGTTGAGGGATTGGTCACCGGAAACGCATCCATGGTG CAGATCTGCGTGCTGTGCCTCAGCGGCGAGCGGGACGAGCTGATCTTCGG CACTGTGCACGTGGAGGGCAACATGATGGTGCACCGCAACTGCTTGTACC TCAGCTCGAATCTCATCCAGCGTGGCGAAAAGAAATTGAGCATCATGAAC TTCCTCAAGGAGGACATCGAAGCGGAGGTCAACCGCTGCCGTTTGCTTAA GTGTTGCTATTGCCGCCGCTTGGGCGCCAATATTTGGTGCTGCAAGTCGG GGTGCCGTCGCACCTTCCATACCAAGTGCGGCGTCGATAATCTGGCCCAG AACCAGTTCTGCGACACGTACAACTCGTTCTGCCATCAGCATGTGCTGGT GCCTCGAAACCGTCCGGTGTTCAAGAATGACGAGGAATGTCTCCTATGCG CGGAGGACGTGGTTGCCAAGGGCGAGCGCTTCAGCGTGGTGACCTGCCTA TACGCGCCGTGCTGCCGCAATGGATGGTTCCACCGCAGGTGCCTGCAGCG CTACGCCAACTCGTCCGGCTACTTCTTCAAGTGCCCGCTGTGCAACAACA CAGATGTGTTCCGCAGGGTGGCTTATATGGGCATCGCGGTGCTGGACCAA GACGCTTCCTGGGAGACCGAGCCGGACGCCTTTGCTGGGCAGTACCGCCG CGATGTCAATTGTACGGCCGCGTTGTGCGTTGCGGTCTCTGGTCGCGCCG ACACTTCCGCCATGCTGCTGTACTGCACCTCATGTGGCGCCAATCCGTCA CATTACCTTTGCACGTTGAAGACTCTCCAAAACTACGTCTGCAAGGTTTG CTCAGCCGTCAGCCCGGAGGCAGTGCCCGTTGCCGAATCGGACTCGGATG ACGCCGGCTCAATGGACGACTCGGCCGAAGCCCCACGTCCAGGTCACCTA AATGGTGATCAGATTCAAGAGAAGCTATCACCCTCCCATTGGGATGATTT CGGCTCCTCCGACGATGATGCCGTCTTTCAGCGTGCGTTCGATACCAAAG TGCAGAGTCGCGTGGTGACCCTCTCCGATGATCAACCATCTACTTCTGCG GGGGCACGCGCTTTAGCCGATCGTGGAACTCGCACATTTGAATCACAGGG AACGCAAACAACATTTCTCTCAAGTGTAGTAACCTCGTTTCGCTCTGCTA CTGCAACTGCGACATCATCCACATCCACATCCACATCCACATCCGCATCG ACACTTGATAACCAAGAAAACACTGAGCCGTCCACATCGAATGGACGTCG TCCCTGGCGCCCTAGATACGTCTCGCCGCCTAGACACGTGTCGGATAGCG ATGACGATAGTGATGAATATGATAGTGATGAATATGAGTCGAAGAGGCGC CAACTTACGCCCACTGCCGCTGCGCCGTCGAATGGCAGGCGTCTGTTGGG CTCCATCTCGCCGGAGCCGAGCACTCCTGCTCCACGTGTCTTACGTCGCC GCACTTTGGCCAACAGGCCTTCCTCACTCGCCAACATGGATATATCCTGT GTGGCCAATAGGACCCGCCACCGCTTGTCCAACCACATGGCCAGCCGCAA GGATTAGGAGAACAGATGACATTACAATAGATCACACTCGCACAAATCCA TGTACACGGCAAGATCAATATGGATATATCCTGAGTGGGCAGGATACCCG CAGGGACTAGGAGAACAGATGACAACATCACGATACATAACACTTGCACA TTCCATTAACCATCACATCGACTAGGTTGTGGACCAAATGCGTGCGTTTG GTTCGCACCCGTTATTCTCTATTTTCCGCCTTTTGTACATATAAAATTCC ATTAAAATCCTGTTCTCCTAGCGGTATTCGCTAATAAGATGCATTTACCA TTTATTTGCTTTGTTAAGTAAGCTAAGTAAGTGCTCCTTTCCACACGTAT AAATAACTTGTATACATATTTACTTTAAGTAGCTGTAGACATTATTTTCC CCATCTGACTTTCTTTTCAGCAGCTCGCAGTGCCTACATTATTTCAATTA CTCTAAGCATTACATTTTTTTGACTAGCGATCTAAGAATCCCTGAATCCA GTATCTGTATCAAGAATCCCAGTATCTGAACGCTAAAATGAAATAAATAA AATTAAAATATTTGAAAAATAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9576-RA | 2339 | CG9576-RA | 118..2339 | 1..2222 | 11110 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 20048910..20050424 | 2220..700 | 7435 | 99.4 | Minus |
chrX | 22417052 | chrX | 20050489..20050992 | 699..196 | 2520 | 100 | Minus |
chrX | 22417052 | chrX | 20051084..20051279 | 196..1 | 980 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 20168451..20169973 | 2222..700 | 7615 | 100 | Minus |
X | 23527363 | X | 20170038..20170541 | 699..196 | 2520 | 100 | Minus |
X | 23527363 | X | 20170633..20170828 | 196..1 | 980 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 20048910..20050424 | 700..2220 | 99 | <- | Minus |
chrX | 20050489..20050991 | 197..699 | 100 | <- | Minus |
chrX | 20051084..20051279 | 1..196 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9576-RA | 1..1563 | 95..1657 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9576-RA | 1..1563 | 95..1657 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phf7-RA | 1..1563 | 95..1657 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9576-RA | 1..1563 | 95..1657 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phf7-RA | 1..1563 | 95..1657 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9576-RA | 1..2220 | 1..2220 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9576-RA | 1..2220 | 1..2220 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phf7-RA | 2..2221 | 1..2220 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9576-RA | 1..2220 | 1..2220 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phf7-RA | 2..2221 | 1..2220 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 20160355..20161875 | 700..2220 | 100 | <- | Minus |
X | 20161940..20162442 | 197..699 | 100 | <- | Minus |
X | 20162535..20162730 | 1..196 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 20160355..20161875 | 700..2220 | 100 | <- | Minus |
X | 20161940..20162442 | 197..699 | 100 | <- | Minus |
X | 20162535..20162730 | 1..196 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 20160355..20161875 | 700..2220 | 100 | <- | Minus |
X | 20161940..20162442 | 197..699 | 100 | <- | Minus |
X | 20162535..20162730 | 1..196 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 20054388..20055908 | 700..2220 | 100 | <- | Minus |
arm_X | 20055973..20056475 | 197..699 | 100 | <- | Minus |
arm_X | 20056568..20056763 | 1..196 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 20168453..20169973 | 700..2220 | 100 | <- | Minus |
X | 20170038..20170540 | 197..699 | 100 | <- | Minus |
X | 20170633..20170828 | 1..196 | 100 | Minus |
Translation from 0 to 1656
> LD43541.hyp ENSQSLLNRRDLFFSAAVAVLVEGLVTGNASMVQICVLCLSGERDELIFG TVHVEGNMMVHRNCLYLSSNLIQRGEKKLSIMNFLKEDIEAEVNRCRLLK CCYCRRLGANIWCCKSGCRRTFHTKCGVDNLAQNQFCDTYNSFCHQHVLV PRNRPVFKNDEECLLCAEDVVAKGERFSVVTCLYAPCCRNGWFHRRCLQR YANSSGYFFKCPLCNNTDVFRRVAYMGIAVLDQDASWETEPDAFAGQYRR DVNCTAALCVAVSGRADTSAMLLYCTSCGANPSHYLCTLKTLQNYVCKVC SAVSPEAVPVAESDSDDAGSMDDSAEAPRPGHLNGDQIQEKLSPSHWDDF GSSDDDAVFQRAFDTKVQSRVVTLSDDQPSTSAGARALADRGTRTFESQG TQTTFLSSVVTSFRSATATATSSTSTSTSTSASTLDNQENTEPSTSNGRR PWRPRYVSPPRHVSDSDDDSDEYDSDEYESKRRQLTPTAAAPSNGRRLLG SISPEPSTPAPRVLRRRTLANRPSSLANMDISCVANRTRHRLSNHMASRK D*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Phf7-PC | 520 | CG9576-PC | 1..520 | 32..551 | 2782 | 100 | Plus |
Phf7-PB | 520 | CG9576-PB | 1..520 | 32..551 | 2782 | 100 | Plus |
Phf7-PA | 520 | CG9576-PA | 1..520 | 32..551 | 2782 | 100 | Plus |
pie-PB | 582 | CG5354-PB | 9..360 | 36..389 | 421 | 28.8 | Plus |
pie-PA | 582 | CG5354-PA | 9..360 | 36..389 | 421 | 28.8 | Plus |
Translation from 94 to 1656
> LD43541.pep MVQICVLCLSGERDELIFGTVHVEGNMMVHRNCLYLSSNLIQRGEKKLSI MNFLKEDIEAEVNRCRLLKCCYCRRLGANIWCCKSGCRRTFHTKCGVDNL AQNQFCDTYNSFCHQHVLVPRNRPVFKNDEECLLCAEDVVAKGERFSVVT CLYAPCCRNGWFHRRCLQRYANSSGYFFKCPLCNNTDVFRRVAYMGIAVL DQDASWETEPDAFAGQYRRDVNCTAALCVAVSGRADTSAMLLYCTSCGAN PSHYLCTLKTLQNYVCKVCSAVSPEAVPVAESDSDDAGSMDDSAEAPRPG HLNGDQIQEKLSPSHWDDFGSSDDDAVFQRAFDTKVQSRVVTLSDDQPST SAGARALADRGTRTFESQGTQTTFLSSVVTSFRSATATATSSTSTSTSTS ASTLDNQENTEPSTSNGRRPWRPRYVSPPRHVSDSDDDSDEYDSDEYESK RRQLTPTAAAPSNGRRLLGSISPEPSTPAPRVLRRRTLANRPSSLANMDI SCVANRTRHRLSNHMASRKD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20450-PA | 541 | GF20450-PA | 4..269 | 5..273 | 828 | 57.6 | Plus |
Dana\GF16590-PA | 441 | GF16590-PA | 17..284 | 14..272 | 360 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18009-PA | 556 | GG18009-PA | 1..555 | 1..519 | 1514 | 58.2 | Plus |
Dere\GG23932-PA | 549 | GG23932-PA | 8..266 | 4..262 | 388 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24325-PA | 437 | GH24325-PA | 4..280 | 5..286 | 610 | 44.3 | Plus |
Dgri\GH12666-PA | 481 | GH12666-PA | 19..348 | 12..339 | 349 | 28.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Phf7-PC | 520 | CG9576-PC | 1..520 | 1..520 | 2782 | 100 | Plus |
Phf7-PB | 520 | CG9576-PB | 1..520 | 1..520 | 2782 | 100 | Plus |
Phf7-PA | 520 | CG9576-PA | 1..520 | 1..520 | 2782 | 100 | Plus |
pie-PB | 582 | CG5354-PB | 9..360 | 5..358 | 421 | 28.8 | Plus |
pie-PA | 582 | CG5354-PA | 9..360 | 5..358 | 421 | 28.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14805-PA | 554 | GI14805-PA | 1..284 | 2..286 | 765 | 48.4 | Plus |
Dmoj\GI16245-PA | 489 | GI16245-PA | 16..369 | 12..371 | 394 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12919-PA | 463 | GL12919-PA | 4..270 | 5..274 | 685 | 48.5 | Plus |
Dper\GL15172-PA | 469 | GL15172-PA | 2..264 | 23..277 | 312 | 29.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21886-PA | 463 | GA21886-PA | 4..270 | 5..274 | 689 | 49.6 | Plus |
Dpse\GA22797-PA | 469 | GA22797-PA | 2..264 | 23..277 | 305 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22690-PA | 523 | GM22690-PA | 1..523 | 1..520 | 1894 | 73.3 | Plus |
Dsec\GM11670-PA | 480 | GM11670-PA | 9..360 | 5..358 | 390 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22259-PA | 519 | GD22259-PA | 9..317 | 5..300 | 389 | 30.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19472-PA | 537 | GJ19472-PA | 4..268 | 5..272 | 721 | 51.1 | Plus |
Dvir\GJ16710-PA | 487 | GJ16710-PA | 18..291 | 14..277 | 369 | 31 | Plus |