Clone LD43541 Report

Search the DGRC for LD43541

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:435
Well:41
Vector:pOT2
Associated Gene/TranscriptPhf7-RA
Protein status:LD43541.pep: gold
Preliminary Size:2221
Sequenced Size:2244

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9576 2001-01-01 Release 2 assignment
CG9576 2001-07-04 Blastp of sequenced clone
CG9576 2003-01-01 Sim4 clustering to Release 3
CG9576 2008-04-29 Release 5.5 accounting
CG9576 2008-08-15 Release 5.9 accounting
CG9576 2008-12-18 5.12 accounting

Clone Sequence Records

LD43541.complete Sequence

2244 bp (2244 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051970

> LD43541.complete
CGAAAACAGTCAATCGCTTCTCAATCGGCGAGATTTGTTTTTTTCGGCTG
CTGTTGCTGTTTTAGTTGAGGGATTGGTCACCGGAAACGCATCCATGGTG
CAGATCTGCGTGCTGTGCCTCAGCGGCGAGCGGGACGAGCTGATCTTCGG
CACTGTGCACGTGGAGGGCAACATGATGGTGCACCGCAACTGCTTGTACC
TCAGCTCGAATCTCATCCAGCGTGGCGAAAAGAAATTGAGCATCATGAAC
TTCCTCAAGGAGGACATCGAAGCGGAGGTCAACCGCTGCCGTTTGCTTAA
GTGTTGCTATTGCCGCCGCTTGGGCGCCAATATTTGGTGCTGCAAGTCGG
GGTGCCGTCGCACCTTCCATACCAAGTGCGGCGTCGATAATCTGGCCCAG
AACCAGTTCTGCGACACGTACAACTCGTTCTGCCATCAGCATGTGCTGGT
GCCTCGAAACCGTCCGGTGTTCAAGAATGACGAGGAATGTCTCCTATGCG
CGGAGGACGTGGTTGCCAAGGGCGAGCGCTTCAGCGTGGTGACCTGCCTA
TACGCGCCGTGCTGCCGCAATGGATGGTTCCACCGCAGGTGCCTGCAGCG
CTACGCCAACTCGTCCGGCTACTTCTTCAAGTGCCCGCTGTGCAACAACA
CAGATGTGTTCCGCAGGGTGGCTTATATGGGCATCGCGGTGCTGGACCAA
GACGCTTCCTGGGAGACCGAGCCGGACGCCTTTGCTGGGCAGTACCGCCG
CGATGTCAATTGTACGGCCGCGTTGTGCGTTGCGGTCTCTGGTCGCGCCG
ACACTTCCGCCATGCTGCTGTACTGCACCTCATGTGGCGCCAATCCGTCA
CATTACCTTTGCACGTTGAAGACTCTCCAAAACTACGTCTGCAAGGTTTG
CTCAGCCGTCAGCCCGGAGGCAGTGCCCGTTGCCGAATCGGACTCGGATG
ACGCCGGCTCAATGGACGACTCGGCCGAAGCCCCACGTCCAGGTCACCTA
AATGGTGATCAGATTCAAGAGAAGCTATCACCCTCCCATTGGGATGATTT
CGGCTCCTCCGACGATGATGCCGTCTTTCAGCGTGCGTTCGATACCAAAG
TGCAGAGTCGCGTGGTGACCCTCTCCGATGATCAACCATCTACTTCTGCG
GGGGCACGCGCTTTAGCCGATCGTGGAACTCGCACATTTGAATCACAGGG
AACGCAAACAACATTTCTCTCAAGTGTAGTAACCTCGTTTCGCTCTGCTA
CTGCAACTGCGACATCATCCACATCCACATCCACATCCACATCCGCATCG
ACACTTGATAACCAAGAAAACACTGAGCCGTCCACATCGAATGGACGTCG
TCCCTGGCGCCCTAGATACGTCTCGCCGCCTAGACACGTGTCGGATAGCG
ATGACGATAGTGATGAATATGATAGTGATGAATATGAGTCGAAGAGGCGC
CAACTTACGCCCACTGCCGCTGCGCCGTCGAATGGCAGGCGTCTGTTGGG
CTCCATCTCGCCGGAGCCGAGCACTCCTGCTCCACGTGTCTTACGTCGCC
GCACTTTGGCCAACAGGCCTTCCTCACTCGCCAACATGGATATATCCTGT
GTGGCCAATAGGACCCGCCACCGCTTGTCCAACCACATGGCCAGCCGCAA
GGATTAGGAGAACAGATGACATTACAATAGATCACACTCGCACAAATCCA
TGTACACGGCAAGATCAATATGGATATATCCTGAGTGGGCAGGATACCCG
CAGGGACTAGGAGAACAGATGACAACATCACGATACATAACACTTGCACA
TTCCATTAACCATCACATCGACTAGGTTGTGGACCAAATGCGTGCGTTTG
GTTCGCACCCGTTATTCTCTATTTTCCGCCTTTTGTACATATAAAATTCC
ATTAAAATCCTGTTCTCCTAGCGGTATTCGCTAATAAGATGCATTTACCA
TTTATTTGCTTTGTTAAGTAAGCTAAGTAAGTGCTCCTTTCCACACGTAT
AAATAACTTGTATACATATTTACTTTAAGTAGCTGTAGACATTATTTTCC
CCATCTGACTTTCTTTTCAGCAGCTCGCAGTGCCTACATTATTTCAATTA
CTCTAAGCATTACATTTTTTTGACTAGCGATCTAAGAATCCCTGAATCCA
GTATCTGTATCAAGAATCCCAGTATCTGAACGCTAAAATGAAATAAATAA
AATTAAAATATTTGAAAAATAAAAAAAAAAAAAAAAAAAAAAAA

LD43541.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9576-RA 2339 CG9576-RA 118..2339 1..2222 11110 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20048910..20050424 2220..700 7435 99.4 Minus
chrX 22417052 chrX 20050489..20050992 699..196 2520 100 Minus
chrX 22417052 chrX 20051084..20051279 196..1 980 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20160353..20161875 2222..700 7615 100 Minus
X 23542271 X 20161940..20162443 699..196 2520 100 Minus
X 23542271 X 20162535..20162730 196..1 980 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 20168451..20169973 2222..700 7615 100 Minus
X 23527363 X 20170038..20170541 699..196 2520 100 Minus
X 23527363 X 20170633..20170828 196..1 980 100 Minus
Blast to na_te.dros performed on 2019-03-16 01:32:44 has no hits.

LD43541.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:33:21 Download gff for LD43541.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20048910..20050424 700..2220 99 <- Minus
chrX 20050489..20050991 197..699 100 <- Minus
chrX 20051084..20051279 1..196 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:08 Download gff for LD43541.complete
Subject Subject Range Query Range Percent Splice Strand
CG9576-RA 1..1563 95..1657 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:15:52 Download gff for LD43541.complete
Subject Subject Range Query Range Percent Splice Strand
CG9576-RA 1..1563 95..1657 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:07:41 Download gff for LD43541.complete
Subject Subject Range Query Range Percent Splice Strand
Phf7-RA 1..1563 95..1657 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:47:19 Download gff for LD43541.complete
Subject Subject Range Query Range Percent Splice Strand
CG9576-RA 1..1563 95..1657 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:36:32 Download gff for LD43541.complete
Subject Subject Range Query Range Percent Splice Strand
Phf7-RA 1..1563 95..1657 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:09:50 Download gff for LD43541.complete
Subject Subject Range Query Range Percent Splice Strand
CG9576-RA 1..2220 1..2220 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:15:52 Download gff for LD43541.complete
Subject Subject Range Query Range Percent Splice Strand
CG9576-RA 1..2220 1..2220 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:07:41 Download gff for LD43541.complete
Subject Subject Range Query Range Percent Splice Strand
Phf7-RA 2..2221 1..2220 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:47:19 Download gff for LD43541.complete
Subject Subject Range Query Range Percent Splice Strand
CG9576-RA 1..2220 1..2220 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:36:32 Download gff for LD43541.complete
Subject Subject Range Query Range Percent Splice Strand
Phf7-RA 2..2221 1..2220 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:33:21 Download gff for LD43541.complete
Subject Subject Range Query Range Percent Splice Strand
X 20160355..20161875 700..2220 100 <- Minus
X 20161940..20162442 197..699 100 <- Minus
X 20162535..20162730 1..196 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:33:21 Download gff for LD43541.complete
Subject Subject Range Query Range Percent Splice Strand
X 20160355..20161875 700..2220 100 <- Minus
X 20161940..20162442 197..699 100 <- Minus
X 20162535..20162730 1..196 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:33:21 Download gff for LD43541.complete
Subject Subject Range Query Range Percent Splice Strand
X 20160355..20161875 700..2220 100 <- Minus
X 20161940..20162442 197..699 100 <- Minus
X 20162535..20162730 1..196 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:07:41 Download gff for LD43541.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20054388..20055908 700..2220 100 <- Minus
arm_X 20055973..20056475 197..699 100 <- Minus
arm_X 20056568..20056763 1..196 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:25:15 Download gff for LD43541.complete
Subject Subject Range Query Range Percent Splice Strand
X 20168453..20169973 700..2220 100 <- Minus
X 20170038..20170540 197..699 100 <- Minus
X 20170633..20170828 1..196 100   Minus

LD43541.hyp Sequence

Translation from 0 to 1656

> LD43541.hyp
ENSQSLLNRRDLFFSAAVAVLVEGLVTGNASMVQICVLCLSGERDELIFG
TVHVEGNMMVHRNCLYLSSNLIQRGEKKLSIMNFLKEDIEAEVNRCRLLK
CCYCRRLGANIWCCKSGCRRTFHTKCGVDNLAQNQFCDTYNSFCHQHVLV
PRNRPVFKNDEECLLCAEDVVAKGERFSVVTCLYAPCCRNGWFHRRCLQR
YANSSGYFFKCPLCNNTDVFRRVAYMGIAVLDQDASWETEPDAFAGQYRR
DVNCTAALCVAVSGRADTSAMLLYCTSCGANPSHYLCTLKTLQNYVCKVC
SAVSPEAVPVAESDSDDAGSMDDSAEAPRPGHLNGDQIQEKLSPSHWDDF
GSSDDDAVFQRAFDTKVQSRVVTLSDDQPSTSAGARALADRGTRTFESQG
TQTTFLSSVVTSFRSATATATSSTSTSTSTSASTLDNQENTEPSTSNGRR
PWRPRYVSPPRHVSDSDDDSDEYDSDEYESKRRQLTPTAAAPSNGRRLLG
SISPEPSTPAPRVLRRRTLANRPSSLANMDISCVANRTRHRLSNHMASRK
D*

LD43541.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
Phf7-PC 520 CG9576-PC 1..520 32..551 2782 100 Plus
Phf7-PB 520 CG9576-PB 1..520 32..551 2782 100 Plus
Phf7-PA 520 CG9576-PA 1..520 32..551 2782 100 Plus
pie-PB 582 CG5354-PB 9..360 36..389 421 28.8 Plus
pie-PA 582 CG5354-PA 9..360 36..389 421 28.8 Plus

LD43541.pep Sequence

Translation from 94 to 1656

> LD43541.pep
MVQICVLCLSGERDELIFGTVHVEGNMMVHRNCLYLSSNLIQRGEKKLSI
MNFLKEDIEAEVNRCRLLKCCYCRRLGANIWCCKSGCRRTFHTKCGVDNL
AQNQFCDTYNSFCHQHVLVPRNRPVFKNDEECLLCAEDVVAKGERFSVVT
CLYAPCCRNGWFHRRCLQRYANSSGYFFKCPLCNNTDVFRRVAYMGIAVL
DQDASWETEPDAFAGQYRRDVNCTAALCVAVSGRADTSAMLLYCTSCGAN
PSHYLCTLKTLQNYVCKVCSAVSPEAVPVAESDSDDAGSMDDSAEAPRPG
HLNGDQIQEKLSPSHWDDFGSSDDDAVFQRAFDTKVQSRVVTLSDDQPST
SAGARALADRGTRTFESQGTQTTFLSSVVTSFRSATATATSSTSTSTSTS
ASTLDNQENTEPSTSNGRRPWRPRYVSPPRHVSDSDDDSDEYDSDEYESK
RRQLTPTAAAPSNGRRLLGSISPEPSTPAPRVLRRRTLANRPSSLANMDI
SCVANRTRHRLSNHMASRKD*

LD43541.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20450-PA 541 GF20450-PA 4..269 5..273 828 57.6 Plus
Dana\GF16590-PA 441 GF16590-PA 17..284 14..272 360 32 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18009-PA 556 GG18009-PA 1..555 1..519 1514 58.2 Plus
Dere\GG23932-PA 549 GG23932-PA 8..266 4..262 388 33.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24325-PA 437 GH24325-PA 4..280 5..286 610 44.3 Plus
Dgri\GH12666-PA 481 GH12666-PA 19..348 12..339 349 28.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
Phf7-PC 520 CG9576-PC 1..520 1..520 2782 100 Plus
Phf7-PB 520 CG9576-PB 1..520 1..520 2782 100 Plus
Phf7-PA 520 CG9576-PA 1..520 1..520 2782 100 Plus
pie-PB 582 CG5354-PB 9..360 5..358 421 28.8 Plus
pie-PA 582 CG5354-PA 9..360 5..358 421 28.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14805-PA 554 GI14805-PA 1..284 2..286 765 48.4 Plus
Dmoj\GI16245-PA 489 GI16245-PA 16..369 12..371 394 27.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12919-PA 463 GL12919-PA 4..270 5..274 685 48.5 Plus
Dper\GL15172-PA 469 GL15172-PA 2..264 23..277 312 29.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21886-PA 463 GA21886-PA 4..270 5..274 689 49.6 Plus
Dpse\GA22797-PA 469 GA22797-PA 2..264 23..277 305 29.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22690-PA 523 GM22690-PA 1..523 1..520 1894 73.3 Plus
Dsec\GM11670-PA 480 GM11670-PA 9..360 5..358 390 28.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22259-PA 519 GD22259-PA 9..317 5..300 389 30.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19472-PA 537 GJ19472-PA 4..268 5..272 721 51.1 Plus
Dvir\GJ16710-PA 487 GJ16710-PA 18..291 14..277 369 31 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16334-PA 515 GK16334-PA 1..515 1..519 789 36.3 Plus
Dwil\GK19966-PA 459 GK19966-PA 15..337 10..327 372 30.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17340-PA 519 GE17340-PA 1..519 1..520 1501 63.1 Plus
Dyak\GE25954-PA 572 GE25954-PA 9..266 5..262 411 34.1 Plus