Clone LD43551 Report

Search the DGRC for LD43551

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:435
Well:51
Vector:pOT2
Associated Gene/Transcriptergic53-RA
Protein status:LD43551.pep: gold
Preliminary Size:2384
Sequenced Size:2041

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6822 2001-01-01 Release 2 assignment
CG6822 2001-07-04 Blastp of sequenced clone
CG6822 2003-01-01 Sim4 clustering to Release 3
ergic53 2008-04-29 Release 5.5 accounting
ergic53 2008-08-15 Release 5.9 accounting
ergic53 2008-12-18 5.12 accounting

Clone Sequence Records

LD43551.complete Sequence

2041 bp (2041 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051971

> LD43551.complete
TCAACATATAATTGCAAAGATGCGGCCCACATTCCTGGCCATTTTGTGCT
TCCTGGCGTGGAATCCCAGCTCCGAGGCGACCGGCAATCTGAGTCCTGGA
GCCGTGGGCGTGCACCGTCGCTTCGAGTACAAGTACTCGTTCAAGCCGCC
GTATTTGGCACAGAAAGACGGCACCGTGCCGTTTTGGGAGTACGGGGGAA
ATGCCATCGCCAGTTCGGAAAGTGTGCGCGTGGCGCCATCGCTGCGCTCA
CAGAAGGGTGCCATCTGGACAAAGTCACAGACGAACTTCGACTGGTGGGA
CGTGGAGATCGTGTTCCGGGTGACGGGACGTGGCAGGATCGGAGCCGATG
GATTGGCCTTCTGGTACACCACGGAAAAGGGTGACTACAATGGGCCTGTG
TTCGGATCCTCGGACCGCTGGAATGGTCTGGCCATCATGTTCGATTCCTT
CGATAATGACAACAAGCACAACAATCCTTACATCAGTGCCGTGCTCAATG
ATGGCACCAAGCTGTATGACCATGCCGAAGATGGAACCACTCAGCTCCTG
AGCGGTTGCCTCAGGGATTTCCGTAACAAGCCCTTCCCTACACGGGCGCG
AATCGAGTACTACAACAACGTGCTTACCGTCATGATCCACAACGGAATGT
CCAACAACAACGATGACTACGAGCTGTGTCTGAGAGCGGATGGCGTCAAT
CTGCCCAAGAACGGCTACTTTGGCATTTCCGCCGCCACGGGCGGTCTGGC
CGATGACCACGATGTGTTCCATTTCCTGACCACGTCGTTGCATGCCGCTG
GACAAGTTCAGGAGCAGCCCAAGGTGGAAAACCAGGAGAAGCTTACGCAA
GAGTACAAGGAATACCAAGATAAACTGGAGAAACAGAAGCAGGAGTACAA
GAAGGACCATCCCGACGAGCACAAAGACGAGGAGGACTGGGAGGAGTTCT
ACGAGTCGGAGAACCAGCGTGAGCTGCGTCAGATCTGGCAGGGTCAGAGC
CAAATTGCCGATCACCTACGCGAACTTTCCCGCAAAGTGGATGAGATTAT
TGGCCGCCAGGAGACCACGCTGTCGCTGGTCTCACGTAATGCTGGACAGG
CTCTGCCTCCGCCCGCCGCCGGCGGAGTGCCACAGCAACAGCTGCCCGTT
GGCGCAGTCAGCAGGAGCGATGTAGATCTTCTGCTCACTAATCAGAACAT
GCTGCTCAGTTCCATCCGCGAGATTCGTCAACTGGTTGGCGATATCAATG
TGCGCACTGATAACATTCAAACGAATCAGAAGCATGCGCCCACAGCACAA
ATCCAATCCACCGGCTATGATGTACAAACGCTCATCGCCGAGATGCGCGA
TGGCATGAATCAGGTCAAGCAGGGCATCACCCACGTGGGCCAAAGATTGG
CAGCGCCACAGGGAGCAGCGCAGGTGGCCAATTGTCCCACGGGCAATTGC
GTTGGAGTCACATTGTTCCTAAGCGTAACTGTTGTGCAACTGCTGCTAGT
CTTCATCTACAACGTCTTCAAAAACCGCAGCGAAGCACAGGCGAAAAAGT
TCTATTAGGCGAATTCGCGACTTATTGGGATCGTAACGAATAACAAACAC
ACAAGCATACACCCACAGAAATCACGAGGAAACAGATTCGCACACCTGAC
TAGGCAGCAACTAAATTTAGTTAAAATGAAAGATTTAAGACTTCAGCGTA
GCATGCTCTACCATTATGTGTAACTGTTTGTTTTTTAAATAGAAGTCTGT
TTAAGAAGTCAGGTCACGAATACAAACTCAAGTCGTTACTTAATCAAAGC
AAGAACAAGAAATTTGATCAATGATGTATGCCTCATGACAATGCCACGCA
ATACAAAACGAAGAAACCGTCGAAGAAGCCACAAGACAAACTTCCCTTAG
TAATAGCCAACAGAAGATGTTTCATATTTGTTTTAGCAAGTCAAGTCGAA
AGTTTCACTCCATTCTCAACTCTGCATATCATGTGTGCAGGCATTTATAA
GAAGCACAAGAAAATCTATCTAAAAAAAAAAAAAAAAAAAA

LD43551.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
ergic53-RA 2589 ergic53-RA 117..2157 1..2041 10175 99.9 Plus
ergic53-RB 2589 ergic53-RB 117..2157 1..2041 10175 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8527358..8528076 201..919 3475 98.9 Plus
chr3L 24539361 chr3L 8529067..8529566 1522..2021 2425 99 Plus
chr3L 24539361 chr3L 8528150..8528627 918..1395 2390 100 Plus
chr3L 24539361 chr3L 8526971..8527170 1..200 970 99 Plus
chr3L 24539361 chr3L 8528873..8529000 1394..1521 640 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8535374..8536092 201..919 3595 100 Plus
3L 28110227 3L 8537082..8537601 1522..2041 2570 99.6 Plus
3L 28110227 3L 8536166..8536643 918..1395 2390 100 Plus
3L 28110227 3L 8534987..8535186 1..200 1000 100 Plus
3L 28110227 3L 8536889..8537016 1394..1521 640 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8528474..8529192 201..919 3595 100 Plus
3L 28103327 3L 8530182..8530701 1522..2041 2570 99.6 Plus
3L 28103327 3L 8529266..8529743 918..1395 2390 100 Plus
3L 28103327 3L 8528087..8528286 1..200 1000 100 Plus
3L 28103327 3L 8529989..8530116 1394..1521 640 100 Plus
Blast to na_te.dros performed on 2019-03-16 22:07:21 has no hits.

LD43551.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:08:31 Download gff for LD43551.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8526971..8527170 1..200 99 -> Plus
chr3L 8527358..8528076 201..919 98 -> Plus
chr3L 8528152..8528627 920..1395 100 -> Plus
chr3L 8528875..8529000 1396..1521 100 -> Plus
chr3L 8529067..8529565 1522..2021 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:09 Download gff for LD43551.complete
Subject Subject Range Query Range Percent Splice Strand
ergic53-RB 1..1539 20..1558 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:15:53 Download gff for LD43551.complete
Subject Subject Range Query Range Percent Splice Strand
ergic53-RB 1..1539 20..1558 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:10:22 Download gff for LD43551.complete
Subject Subject Range Query Range Percent Splice Strand
ergic53-RA 1..1539 20..1558 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:47:20 Download gff for LD43551.complete
Subject Subject Range Query Range Percent Splice Strand
ergic53-RB 1..1539 20..1558 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:44 Download gff for LD43551.complete
Subject Subject Range Query Range Percent Splice Strand
ergic53-RA 1..1539 20..1558 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:09:52 Download gff for LD43551.complete
Subject Subject Range Query Range Percent Splice Strand
ergic53-RB 36..2056 1..2021 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:15:53 Download gff for LD43551.complete
Subject Subject Range Query Range Percent Splice Strand
ergic53-RB 36..2056 1..2021 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:22 Download gff for LD43551.complete
Subject Subject Range Query Range Percent Splice Strand
ergic53-RA 11..2031 1..2021 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:47:21 Download gff for LD43551.complete
Subject Subject Range Query Range Percent Splice Strand
ergic53-RB 36..2056 1..2021 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:44 Download gff for LD43551.complete
Subject Subject Range Query Range Percent Splice Strand
ergic53-RA 11..2031 1..2021 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:08:31 Download gff for LD43551.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8534987..8535186 1..200 100 -> Plus
3L 8535374..8536092 201..919 100 -> Plus
3L 8536168..8536643 920..1395 100 -> Plus
3L 8536891..8537016 1396..1521 100 -> Plus
3L 8537082..8537581 1522..2021 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:08:31 Download gff for LD43551.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8534987..8535186 1..200 100 -> Plus
3L 8535374..8536092 201..919 100 -> Plus
3L 8536168..8536643 920..1395 100 -> Plus
3L 8536891..8537016 1396..1521 100 -> Plus
3L 8537082..8537581 1522..2021 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:08:31 Download gff for LD43551.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8534987..8535186 1..200 100 -> Plus
3L 8535374..8536092 201..919 100 -> Plus
3L 8536168..8536643 920..1395 100 -> Plus
3L 8536891..8537016 1396..1521 100 -> Plus
3L 8537082..8537581 1522..2021 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:22 Download gff for LD43551.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8528087..8528286 1..200 100 -> Plus
arm_3L 8528474..8529192 201..919 100 -> Plus
arm_3L 8529268..8529743 920..1395 100 -> Plus
arm_3L 8529991..8530116 1396..1521 100 -> Plus
arm_3L 8530182..8530681 1522..2021 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:25:17 Download gff for LD43551.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8528087..8528286 1..200 100 -> Plus
3L 8528474..8529192 201..919 100 -> Plus
3L 8529268..8529743 920..1395 100 -> Plus
3L 8529991..8530116 1396..1521 100 -> Plus
3L 8530182..8530681 1522..2021 100   Plus

LD43551.hyp Sequence

Translation from 0 to 1557

> LD43551.hyp
QHIIAKMRPTFLAILCFLAWNPSSEATGNLSPGAVGVHRRFEYKYSFKPP
YLAQKDGTVPFWEYGGNAIASSESVRVAPSLRSQKGAIWTKSQTNFDWWD
VEIVFRVTGRGRIGADGLAFWYTTEKGDYNGPVFGSSDRWNGLAIMFDSF
DNDNKHNNPYISAVLNDGTKLYDHAEDGTTQLLSGCLRDFRNKPFPTRAR
IEYYNNVLTVMIHNGMSNNNDDYELCLRADGVNLPKNGYFGISAATGGLA
DDHDVFHFLTTSLHAAGQVQEQPKVENQEKLTQEYKEYQDKLEKQKQEYK
KDHPDEHKDEEDWEEFYESENQRELRQIWQGQSQIADHLRELSRKVDEII
GRQETTLSLVSRNAGQALPPPAAGGVPQQQLPVGAVSRSDVDLLLTNQNM
LLSSIREIRQLVGDINVRTDNIQTNQKHAPTAQIQSTGYDVQTLIAEMRD
GMNQVKQGITHVGQRLAAPQGAAQVANCPTGNCVGVTLFLSVTVVQLLLV
FIYNVFKNRSEAQAKKFY*

LD43551.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
ergic53-PB 512 CG6822-PB 1..512 7..518 2711 100 Plus
ergic53-PA 512 CG6822-PA 1..512 7..518 2711 100 Plus
CG5510-PA 329 CG5510-PA 52..251 59..258 404 39.7 Plus

LD43551.pep Sequence

Translation from 19 to 1557

> LD43551.pep
MRPTFLAILCFLAWNPSSEATGNLSPGAVGVHRRFEYKYSFKPPYLAQKD
GTVPFWEYGGNAIASSESVRVAPSLRSQKGAIWTKSQTNFDWWDVEIVFR
VTGRGRIGADGLAFWYTTEKGDYNGPVFGSSDRWNGLAIMFDSFDNDNKH
NNPYISAVLNDGTKLYDHAEDGTTQLLSGCLRDFRNKPFPTRARIEYYNN
VLTVMIHNGMSNNNDDYELCLRADGVNLPKNGYFGISAATGGLADDHDVF
HFLTTSLHAAGQVQEQPKVENQEKLTQEYKEYQDKLEKQKQEYKKDHPDE
HKDEEDWEEFYESENQRELRQIWQGQSQIADHLRELSRKVDEIIGRQETT
LSLVSRNAGQALPPPAAGGVPQQQLPVGAVSRSDVDLLLTNQNMLLSSIR
EIRQLVGDINVRTDNIQTNQKHAPTAQIQSTGYDVQTLIAEMRDGMNQVK
QGITHVGQRLAAPQGAAQVANCPTGNCVGVTLFLSVTVVQLLLVFIYNVF
KNRSEAQAKKFY*

LD43551.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24333-PA 513 GF24333-PA 1..513 1..512 2560 92 Plus
Dana\GF18890-PA 327 GF18890-PA 50..249 53..252 400 40.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14323-PA 512 GG14323-PA 1..512 1..512 2726 97.9 Plus
Dere\GG12366-PA 329 GG12366-PA 52..251 53..252 400 39.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22518-PA 528 GH22518-PA 16..528 5..512 2400 86.6 Plus
Dgri\GH19087-PA 325 GH19087-PA 48..282 53..284 402 37.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
ergic53-PB 512 CG6822-PB 1..512 1..512 2711 100 Plus
ergic53-PA 512 CG6822-PA 1..512 1..512 2711 100 Plus
CG5510-PA 329 CG5510-PA 52..251 53..252 404 39.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12907-PA 527 GI12907-PA 16..527 5..512 2314 86 Plus
Dmoj\GI23425-PA 325 GI23425-PA 48..247 53..252 398 40.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22531-PA 210 GL22531-PA 1..191 1..190 901 87 Plus
Dper\GL24136-PA 325 GL24136-PA 48..247 53..252 397 39.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27650-PA 465 GA27650-PA 1..465 1..459 2161 87.6 Plus
Dpse\GA18939-PA 325 GA18939-PA 48..247 53..252 397 39.7 Plus
Dpse\GA24597-PA 72 GA24597-PA 1..72 442..512 358 93.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25064-PA 380 GM25064-PA 62..380 194..512 1676 98.7 Plus
Dsec\GM23505-PA 329 GM23505-PA 52..251 53..252 399 39.7 Plus
Dsec\GM25064-PA 380 GM25064-PA 1..63 1..63 353 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14102-PA 508 GD14102-PA 1..508 1..512 2718 98.6 Plus
Dsim\GD18315-PA 329 GD18315-PA 52..251 53..252 400 40.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13048-PA 527 GJ13048-PA 16..527 5..512 2445 88.3 Plus
Dvir\GJ14528-PA 325 GJ14528-PA 48..247 53..252 401 40.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13314-PA 524 GK13314-PA 14..524 5..512 2395 88 Plus
Dwil\GK23131-PA 421 GK23131-PA 14..416 5..425 1785 81.5 Plus
Dwil\GK11718-PA 330 GK11718-PA 51..250 53..252 388 38.2 Plus
Dwil\GK23132-PA 67 GK23132-PA 1..67 446..512 327 88.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20751-PA 512 GE20751-PA 1..512 1..512 2717 97.7 Plus
Dyak\GE10821-PA 329 GE10821-PA 52..251 53..252 400 39.7 Plus