Clone LD43554 Report

Search the DGRC for LD43554

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:435
Well:54
Vector:pOT2
Associated Gene/TranscriptCG5599-RA
Protein status:LD43554.pep: gold
Preliminary Size:1867
Sequenced Size:1848

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5599 2001-01-01 Release 2 assignment
CG5599 2001-10-10 Blastp of sequenced clone
CG5599 2003-01-01 Sim4 clustering to Release 3
CG5599 2008-04-29 Release 5.5 accounting
CG5599 2008-08-15 Release 5.9 accounting
CG5599 2008-12-18 5.12 accounting

Clone Sequence Records

LD43554.complete Sequence

1848 bp (1848 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061469

> LD43554.complete
CGATCCGAACCGATCCGCGTTTTTATCCCTTGCATTTCTAGGTTCCAAAG
TCCCGCTAAATGGCAACACACCTCCTCCGAAACGGCGCTACATGTTGGCT
GCTCAGGAACTGCATTTCCCAACGTGCCGCGTTGAGACGCTGCCTGCATG
TGACCTCAAGCCTGGACAAGACGGTCTCCTTCAACCTCAGCGACATTGGC
GAGGGAATCCGCGAGGTAACCGTCAAGGAGTGGTTCGTGAAAGAGGGCGA
CACCGTGGAGCAGTTCGACAATCTCTGCGAGGTGCAATCGGACAAGGCAT
CGGTGACCATCACCAGTCGCTATGATGGCAAGATAACCAAGATTCACCAC
AAAATCGATGAGATTGCTCTGGTCGGCAAGCCTCTGCTCGATTTCGATGT
GGTGAATGAAGACGAAGATGAGCCGGAGGACTCTTCTTCCTCTTCCTCCT
CCACATCTTCCGATAGTTCAGCAAGCGAAAACGAGGAGAAGCAATCAGCT
GAAGCATCTGCGACGCCCACAGAAGGTCGTGTGATCATACCCGCCACGCC
CTCGGTTCGTCGTCTGGCCAAGGAACACCAGTTGGATCTGGCCAAGGTGC
CAGCAACGGGAAAGAATGGTCGTGTGCTTAAGGGTGATATTCTGGAGTTT
CTGGGCCAAGTTCCTCCCGGTACTAACGTTCCACATCCCACACTATTGGC
GAAAACGCCTAGTGCTGCTCCAAGTGGAGCAGCAAGTGTTTCTGTGCCCG
CTGATCGCGTCGAAGTGCTCAAGGGAGTGCGCAAGGCCATGCTGAAATCG
ATGACGGAATCCCTGAAAATCCCCCATTTTGCTTACAGCGACGAAATCGA
CATGACCCAGTTGATGCAATTCCGTAACCAACTGCAGTTAGTGGCCAAGG
AGAATGGCGTGCCCAAGCTCACGTTCATGCCGTTCTGCATCAAGGCTGCT
AGCATTGCGCTGTCCAAATATCCAATTGTTAACAGCTCCCTGGATTTGGC
CAGCGAATCGCTGGTCTTCAAGGGTGCCCACAACATAAGCGTTGCCATCG
ATACACCACAGGGTCTAGTGGTGCCGAATATTAAGAACTGCCAGACAAAG
ACTATTATCGAGATTGCCAAGGATCTGAATGCACTGGTGGAGCGCGGTAG
GACTGGCTCCCTGTCTCCGGCAGACTTTGCCGATGGCACCTTCTCGCTTT
CCAACATAGGAGTGATTGGCGGTACCTACACACATCCTTGTATAATGGCG
CCGCAGGTGGCCATCGGTGCTATGGGTAGGACCAAGGCGGTGCCGCGTTT
CAACGACAAGGATGAGGTGGTCAAGGCGTATGTGATGAGCGTAAGCTGGT
CCGCCGACCATCGCGTCATCGACGGCGTGACCATGGCCAGCTTCTCCAAC
GTTTGGAAGCAGTATCTGGAGAATCCTGCCCTTTTCCTACTACACTAGAG
AGCCTATTACTCGAAAACGCTTACTTTTACGGATGAGGCTCTTTCCCATG
CATTTATCTAGACATATCTAATATTGTAAATTGTACGACAATCTGCTTTG
AGCTGGAACAGGTGCCATGTGCCGCCACCCATCCCCAAAATGTGCATTTA
TAGGAGGTAAGCCACTCTGAGCGGCTCCTCGATTAATTTAAGCTCCTGGC
GCACATGGCTAACTTTCCGTTTATTTACTTTTATCGTTGTTAACCTGCAT
TTATATATCAGTTTTTTTTTTAAGTTTGTTAAGCAACAACTTCAGCGTAC
AGTTTAACTGTAACCGCATGCATTTATATTAAAGCTTTGTTTCAATGGCT
GTCCAATAAATATCAGAAACGGTTTATGTAAAAAAAAAAAAAAAAAAA

LD43554.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5599-RA 2041 CG5599-RA 131..1962 1..1832 9160 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 14976968..14977652 131..815 3410 99.9 Plus
chrX 22417052 chrX 14978180..14978795 1214..1829 3080 100 Plus
chrX 22417052 chrX 14977718..14978117 815..1214 2000 100 Plus
chrX 22417052 chrX 14976334..14976469 1..136 665 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15086802..15087486 131..815 3425 100 Plus
X 23542271 X 15088014..15088632 1214..1832 3095 100 Plus
X 23542271 X 15087552..15087951 815..1214 2000 100 Plus
X 23542271 X 15086168..15086303 1..136 665 99.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15094900..15095584 131..815 3425 100 Plus
X 23527363 X 15096112..15096730 1214..1832 3095 100 Plus
X 23527363 X 15095650..15096049 815..1214 2000 100 Plus
X 23527363 X 15094266..15094401 1..136 665 99.2 Plus
Blast to na_te.dros performed on 2019-03-16 16:42:33 has no hits.

LD43554.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:43:32 Download gff for LD43554.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 14976334..14976464 1..131 100 -> Plus
chrX 14976969..14977652 132..815 99 -> Plus
chrX 14977719..14978117 816..1214 100 -> Plus
chrX 14978181..14978795 1215..1829 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:10 Download gff for LD43554.complete
Subject Subject Range Query Range Percent Splice Strand
CG5599-RA 1..1389 60..1448 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:53:28 Download gff for LD43554.complete
Subject Subject Range Query Range Percent Splice Strand
CG5599-RA 1..1389 60..1448 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:58 Download gff for LD43554.complete
Subject Subject Range Query Range Percent Splice Strand
CG5599-RA 1..1389 60..1448 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:22:27 Download gff for LD43554.complete
Subject Subject Range Query Range Percent Splice Strand
CG5599-RA 1..1389 60..1448 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:38:27 Download gff for LD43554.complete
Subject Subject Range Query Range Percent Splice Strand
CG5599-RA 1..1389 60..1448 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:38:33 Download gff for LD43554.complete
Subject Subject Range Query Range Percent Splice Strand
CG5599-RA 31..1859 1..1829 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:53:27 Download gff for LD43554.complete
Subject Subject Range Query Range Percent Splice Strand
CG5599-RA 31..1859 1..1829 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:58 Download gff for LD43554.complete
Subject Subject Range Query Range Percent Splice Strand
CG5599-RA 44..1872 1..1829 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:22:27 Download gff for LD43554.complete
Subject Subject Range Query Range Percent Splice Strand
CG5599-RA 31..1859 1..1829 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:38:27 Download gff for LD43554.complete
Subject Subject Range Query Range Percent Splice Strand
CG5599-RA 44..1872 1..1829 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:32 Download gff for LD43554.complete
Subject Subject Range Query Range Percent Splice Strand
X 15086168..15086298 1..131 100 -> Plus
X 15086803..15087486 132..815 100 -> Plus
X 15087553..15087951 816..1214 100 -> Plus
X 15088015..15088629 1215..1829 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:32 Download gff for LD43554.complete
Subject Subject Range Query Range Percent Splice Strand
X 15086168..15086298 1..131 100 -> Plus
X 15086803..15087486 132..815 100 -> Plus
X 15087553..15087951 816..1214 100 -> Plus
X 15088015..15088629 1215..1829 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:32 Download gff for LD43554.complete
Subject Subject Range Query Range Percent Splice Strand
X 15086168..15086298 1..131 100 -> Plus
X 15086803..15087486 132..815 100 -> Plus
X 15087553..15087951 816..1214 100 -> Plus
X 15088015..15088629 1215..1829 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:58 Download gff for LD43554.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14980201..14980331 1..131 100 -> Plus
arm_X 14980836..14981519 132..815 100 -> Plus
arm_X 14981586..14981984 816..1214 100 -> Plus
arm_X 14982048..14982662 1215..1829 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:59:34 Download gff for LD43554.complete
Subject Subject Range Query Range Percent Splice Strand
X 15094901..15095584 132..815 100 -> Plus
X 15095651..15096049 816..1214 100 -> Plus
X 15096113..15096727 1215..1829 100   Plus
X 15094266..15094396 1..131 100 -> Plus

LD43554.pep Sequence

Translation from 59 to 1447

> LD43554.pep
MATHLLRNGATCWLLRNCISQRAALRRCLHVTSSLDKTVSFNLSDIGEGI
REVTVKEWFVKEGDTVEQFDNLCEVQSDKASVTITSRYDGKITKIHHKID
EIALVGKPLLDFDVVNEDEDEPEDSSSSSSSTSSDSSASENEEKQSAEAS
ATPTEGRVIIPATPSVRRLAKEHQLDLAKVPATGKNGRVLKGDILEFLGQ
VPPGTNVPHPTLLAKTPSAAPSGAASVSVPADRVEVLKGVRKAMLKSMTE
SLKIPHFAYSDEIDMTQLMQFRNQLQLVAKENGVPKLTFMPFCIKAASIA
LSKYPIVNSSLDLASESLVFKGAHNISVAIDTPQGLVVPNIKNCQTKTII
EIAKDLNALVERGRTGSLSPADFADGTFSLSNIGVIGGTYTHPCIMAPQV
AIGAMGRTKAVPRFNDKDEVVKAYVMSVSWSADHRVIDGVTMASFSNVWK
QYLENPALFLLH*

LD43554.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21220-PA 464 GF21220-PA 1..464 1..462 1949 82.7 Plus
Dana\GF16855-PA 469 GF16855-PA 270..466 261..460 274 36.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17863-PA 461 GG17863-PA 1..461 1..462 2213 93.7 Plus
Dere\GG18067-PA 469 GG18067-PA 270..466 261..460 283 37.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24642-PA 460 GH24642-PA 1..460 1..462 1728 73 Plus
Dgri\GH18803-PA 481 GH18803-PA 282..478 261..460 276 36.1 Plus
Dgri\GH18804-PA 400 GH18804-PA 201..394 261..457 254 34.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5599-PA 462 CG5599-PA 1..462 1..462 2348 100 Plus
muc-PF 512 CG5261-PF 75..512 33..461 354 25.7 Plus
muc-PB 512 CG5261-PB 75..512 33..461 354 25.7 Plus
muc-PA 421 CG5261-PA 5..421 54..461 353 26.5 Plus
muc-PD 489 CG5261-PD 75..489 33..461 345 26.3 Plus
muc-PE 496 CG5261-PE 75..496 33..461 339 25.8 Plus
muc-PC 473 CG5261-PC 75..473 33..461 322 25.9 Plus
CG5214-PA 468 CG5214-PA 67..465 29..460 301 27.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21689-PA 460 GI21689-PA 1..460 1..462 1826 78.1 Plus
Dmoj\GI22695-PA 370 GI22695-PA 171..364 261..457 291 38.1 Plus
Dmoj\GI22693-PA 482 GI22693-PA 283..479 261..460 282 36.6 Plus
Dmoj\GI23773-PA 514 GI23773-PA 230..514 156..461 240 27.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15179-PA 387 GL15179-PA 1..387 1..462 1498 67 Plus
Dper\GL25816-PA 493 GL25816-PA 290..493 240..461 230 27.7 Plus
Dper\GL11994-PA 145 GL11994-PA 1..142 318..460 197 35.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18998-PA 462 GA18998-PA 1..462 1..462 2005 82.8 Plus
Dpse\GA26154-PA 479 GA26154-PA 280..476 261..460 280 36.6 Plus
Dpse\GA18768-PA 515 GA18768-PA 294..515 240..461 250 29.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12058-PA 440 GM12058-PA 1..440 1..462 2226 91.6 Plus
Dsec\GM23935-PA 451 GM23935-PA 252..448 261..460 279 36.6 Plus
Dsec\GM16455-PA 494 GM16455-PA 273..494 240..461 264 30.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17193-PA 460 GD17193-PA 1..460 1..462 2376 97.2 Plus
Dsim\GD18745-PA 468 GD18745-PA 269..465 261..460 279 36.6 Plus
Dsim\GD23472-PA 496 GD23472-PA 275..496 240..461 264 30.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15870-PA 466 GJ15870-PA 1..465 1..461 1790 77 Plus
Dvir\GJ23422-PA 474 GJ23422-PA 275..468 261..457 258 32.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16188-PA 463 GK16188-PA 1..463 1..462 1882 78.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17165-PA 461 GE17165-PA 1..461 1..462 2206 94.4 Plus
Dyak\GE26088-PA 469 GE26088-PA 270..466 261..460 278 36.1 Plus

LD43554.hyp Sequence

Translation from 59 to 1447

> LD43554.hyp
MATHLLRNGATCWLLRNCISQRAALRRCLHVTSSLDKTVSFNLSDIGEGI
REVTVKEWFVKEGDTVEQFDNLCEVQSDKASVTITSRYDGKITKIHHKID
EIALVGKPLLDFDVVNEDEDEPEDSSSSSSSTSSDSSASENEEKQSAEAS
ATPTEGRVIIPATPSVRRLAKEHQLDLAKVPATGKNGRVLKGDILEFLGQ
VPPGTNVPHPTLLAKTPSAAPSGAASVSVPADRVEVLKGVRKAMLKSMTE
SLKIPHFAYSDEIDMTQLMQFRNQLQLVAKENGVPKLTFMPFCIKAASIA
LSKYPIVNSSLDLASESLVFKGAHNISVAIDTPQGLVVPNIKNCQTKTII
EIAKDLNALVERGRTGSLSPADFADGTFSLSNIGVIGGTYTHPCIMAPQV
AIGAMGRTKAVPRFNDKDEVVKAYVMSVSWSADHRVIDGVTMASFSNVWK
QYLENPALFLLH*

LD43554.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5599-PA 462 CG5599-PA 1..462 1..462 2348 100 Plus
CG5261-PF 512 CG5261-PF 75..512 33..461 354 25.7 Plus
CG5261-PB 512 CG5261-PB 75..512 33..461 354 25.7 Plus
CG5261-PA 421 CG5261-PA 5..421 54..461 353 26.5 Plus
CG5261-PD 489 CG5261-PD 75..489 33..461 345 26.3 Plus