BDGP Sequence Production Resources |
Search the DGRC for LD43563
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 435 |
Well: | 63 |
Vector: | pOT2 |
Associated Gene/Transcript | CSN1b-RA |
Protein status: | LD43563.pep: gold |
Preliminary Size: | 1994 |
Sequenced Size: | 1792 |
Gene | Date | Evidence |
---|---|---|
CG3889 | 2001-01-01 | Release 2 assignment |
CG3889 | 2001-07-04 | Blastp of sequenced clone |
CG3889 | 2003-01-01 | Sim4 clustering to Release 3 |
CSN1b | 2008-04-29 | Release 5.5 accounting |
CSN1b | 2008-08-15 | Release 5.9 accounting |
CSN1b | 2008-12-18 | 5.12 accounting |
1792 bp (1792 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051972
> LD43563.complete ATCGGTGTAAAATAATTTGCGAATCGGAAAAATTAATTGACGAATAAACA AAAACGTAGCTTAAATTTTTCATTTTCCCTGGACTTTCGTTGCAAATAGA AGCAGGATGCCCGTGCTGCCGATGCCACCACTCATGCAGAACGCCGTGGA GCCGATGCAAGTGGACATCGCGCCGCCGAACGAGGACAACGAAAACAACG AGGAGCAGCAGATTGTGGTGGAGAACCCCAGCATCGATCTCGAAGTGTAC GCCAACCAATATGCCGGGATCGTGCGGCTCCATCGCCTAATTTATGTGGC GGACGTCTGCCCGGTTTTAGCCGTGGAGGCTCTGAAAATGGCCATTACTT ACGTTCAAACCACCTACAACGTAAATCTCTACCAAGTGCTGCACAAGCGC TTGAGTGATCTAAACGCTGGAAATGCGCCTGCGCCACCAGCAAATGCTGG CGGAGATCAGGCAGGAGCAGCGGCTCCCGGTCCCCTGGCAGCTGCTCCCC TTCCGGATATCGCGGCACAACCTGTGGCTCAGGCTCAAGGACAGGCTCAA CCCGCTGTCGAAAAGGATGCCTTCGCCTACGATGCCGCTTGGGTAGACAC CAAGATGAAGAAGGCGGCTCTTAAGCTGGAGAAACTGGACTCAGACCTCA AGAACTACAAGTCCAATTCGATCAAGGAGAGCATCCGGAGGGGCCACGAT GACCTGGCTGACCACTACCTCAGTTGTGGCGACCTCACCAATGCCCTGAA GTGCTATTCTCGGGCCAGAGACTACTGCACTAGTGGCAAGCATGTGGTAA ACATGTGCCTTAACGTGATCAAGGTGTCAATTTATCTCCAGAATTGGGCC CATGTGATGAGCTACATATCCAAGGCGGAAAGCACCCCGGACTTCGCCGA GGGCTCCAAGGAGGCTAATGCCCAGGTTCATACTCGCCTTGAATGCGCTG CTGGTCTGGCGGAACTGCAGCAAAAGAAATATAAGGTGGCCGCTAAGCAT TTCCTCAATGCTAACTTCGATCACTGCGACTTTCCCGAAATGATCTCCAC CAGCAATGTGGCGGTCTATGGTGGCCTCTGCGCCCTGGCCACCTTTGATC GACAGGAGCTTAAGCGTCTGGTCATCGCCTCTACATCCTTTAAATTGTTC TTAGAACTGGAGCCCCAACTCAGGGATATTATTTTCAAGTTCTACGAAAG TAAATACGCCTCATGTCTGACGCTTCTGGATGAGATTAGGGACAACCTGC TGGTTGACATGTACATTGCGCCCCATGTAACCACTCTGTATACCAAGATA CGCAATCGCGCGCTAATCCAGTACTTTAGCCCCTATATGTCAGCTGATAT GCACAAAATGGCCATGGCATTTAACTCGTCGGTGGGCGATCTGGAGAACG AGGTGATGCAGTTGATATTAGACGGACAGATCCAGGCGCGTATTGACTCC CACAATAAGATCCTGTTCGCCAAGGAGGCGGATCAAAGGAACAGCACCTT TGAGCGGGCTTTGATCATGGGCAAGCAGTACCAGCGTCATACCCGCATGC TTGTTCTTCGTGCTGCAATGCTCAAGAGCCACATCCACGTGAAGAGCATT TCCCGGGAGGGTGGAAGCAACCACGGCGCCGAACTTTGCGTCTCCGCCGG ATCCTCGACAACTGCTCAACTCGCCCGAATCTAGAGCAATTTAAAAGCAC CACTTAATACCCAATAAATTTTTTAAGATATGTATATCACAAGCTGGCAA AATAAATAATTATAGCAAAGCTAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CSN1b-RA | 1993 | CSN1b-RA | 118..1891 | 1..1774 | 8870 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 18894393..18894531 | 1..139 | 99 | Minus | |
chr3L | 18892688..18894320 | 140..1772 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN1b-RA | 1..1578 | 107..1684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN1b-RA | 1..1578 | 107..1684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN1b-RA | 1..1578 | 107..1684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN1b-RA | 1..1578 | 107..1684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN1b-RA | 1..1578 | 107..1684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN1b-RA | 118..1889 | 1..1772 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN1b-RA | 118..1889 | 1..1772 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN1b-RA | 31..1802 | 1..1772 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN1b-RA | 118..1889 | 1..1772 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN1b-RA | 31..1802 | 1..1772 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18903057..18904689 | 140..1772 | 100 | <- | Minus |
3L | 18904762..18904900 | 1..139 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18903057..18904689 | 140..1772 | 100 | <- | Minus |
3L | 18904762..18904900 | 1..139 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18903057..18904689 | 140..1772 | 100 | <- | Minus |
3L | 18904762..18904900 | 1..139 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 18896157..18897789 | 140..1772 | 100 | <- | Minus |
arm_3L | 18897862..18898000 | 1..139 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18896157..18897789 | 140..1772 | 100 | <- | Minus |
3L | 18897862..18898000 | 1..139 | 100 | Minus |
Translation from 106 to 1683
> LD43563.pep MPVLPMPPLMQNAVEPMQVDIAPPNEDNENNEEQQIVVENPSIDLEVYAN QYAGIVRLHRLIYVADVCPVLAVEALKMAITYVQTTYNVNLYQVLHKRLS DLNAGNAPAPPANAGGDQAGAAAPGPLAAAPLPDIAAQPVAQAQGQAQPA VEKDAFAYDAAWVDTKMKKAALKLEKLDSDLKNYKSNSIKESIRRGHDDL ADHYLSCGDLTNALKCYSRARDYCTSGKHVVNMCLNVIKVSIYLQNWAHV MSYISKAESTPDFAEGSKEANAQVHTRLECAAGLAELQQKKYKVAAKHFL NANFDHCDFPEMISTSNVAVYGGLCALATFDRQELKRLVIASTSFKLFLE LEPQLRDIIFKFYESKYASCLTLLDEIRDNLLVDMYIAPHVTTLYTKIRN RALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHN KILFAKEADQRNSTFERALIMGKQYQRHTRMLVLRAAMLKSHIHVKSISR EGGSNHGAELCVSAGSSTTAQLARI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10799-PA | 524 | GF10799-PA | 1..524 | 1..525 | 2489 | 95 | Plus |
Dana\GF14895-PA | 345 | GF14895-PA | 22..325 | 38..401 | 519 | 35.9 | Plus |
Dana\GF16564-PA | 389 | GF16564-PA | 79..373 | 172..472 | 195 | 21.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13444-PA | 525 | GG13444-PA | 1..525 | 1..525 | 2787 | 98.7 | Plus |
Dere\GG25130-PA | 361 | GG25130-PA | 9..341 | 43..401 | 661 | 39.6 | Plus |
Dere\GG12513-PA | 389 | GG12513-PA | 64..373 | 150..472 | 184 | 20.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16963-PA | 537 | GH16963-PA | 1..537 | 1..525 | 2294 | 87 | Plus |
Dgri\GH10900-PA | 417 | GH10900-PA | 37..378 | 31..401 | 624 | 37.5 | Plus |
Dgri\GH18475-PA | 389 | GH18475-PA | 63..373 | 162..472 | 184 | 20.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CSN1b-PA | 525 | CG3889-PA | 1..525 | 1..525 | 2696 | 100 | Plus |
CSN1a-PA | 364 | CG4697-PA | 5..346 | 39..403 | 642 | 38.4 | Plus |
Rpn7-PA | 389 | CG5378-PA | 79..373 | 172..472 | 187 | 20.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11827-PA | 526 | GI11827-PA | 1..526 | 1..525 | 2289 | 89.8 | Plus |
Dmoj\GI13139-PA | 413 | GI13139-PA | 28..373 | 37..399 | 598 | 36.6 | Plus |
Dmoj\GI10792-PA | 389 | GI10792-PA | 81..373 | 174..472 | 186 | 20.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22061-PA | 520 | GL22061-PA | 1..520 | 1..525 | 2434 | 90.3 | Plus |
Dper\GL24316-PA | 467 | GL24316-PA | 3..466 | 1..507 | 1403 | 56.8 | Plus |
Dper\GL26006-PA | 399 | GL26006-PA | 22..368 | 36..401 | 591 | 37.2 | Plus |
Dper\GL23337-PA | 389 | GL23337-PA | 71..373 | 165..472 | 189 | 21 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17754-PA | 520 | GA17754-PA | 1..520 | 1..525 | 2434 | 90.3 | Plus |
Dpse\GA26568-PA | 461 | GA26568-PA | 3..460 | 1..507 | 1453 | 57.8 | Plus |
Dpse\GA18363-PA | 399 | GA18363-PA | 22..368 | 36..401 | 594 | 36.2 | Plus |
Dpse\GA18834-PA | 389 | GA18834-PA | 79..373 | 172..472 | 185 | 20.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14913-PA | 525 | GM14913-PA | 1..525 | 1..525 | 2812 | 99.4 | Plus |
Dsec\GM15765-PA | 364 | GM15765-PA | 4..346 | 38..403 | 669 | 38.1 | Plus |
Dsec\GM23647-PA | 389 | GM23647-PA | 79..373 | 172..472 | 188 | 20.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12321-PA | 293 | GD12321-PA | 1..293 | 233..525 | 1569 | 99.7 | Plus |
Dsim\GD12320-PA | 219 | GD12320-PA | 1..176 | 1..176 | 895 | 97.2 | Plus |
Dsim\GD23977-PA | 364 | GD23977-PA | 4..346 | 38..403 | 670 | 39.1 | Plus |
Dsim\GD18456-PA | 389 | GD18456-PA | 79..373 | 172..472 | 188 | 20.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13527-PA | 529 | GJ13527-PA | 1..529 | 1..525 | 2325 | 88.3 | Plus |
Dvir\GJ11753-PA | 408 | GJ11753-PA | 17..369 | 30..401 | 606 | 37.4 | Plus |
Dvir\GJ14389-PA | 389 | GJ14389-PA | 81..373 | 174..472 | 186 | 19.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12634-PA | 526 | GK12634-PA | 1..526 | 1..525 | 2369 | 88.3 | Plus |
Dwil\GK18078-PA | 394 | GK18078-PA | 27..382 | 37..401 | 631 | 39.2 | Plus |
Dwil\GK11396-PA | 389 | GK11396-PA | 79..373 | 172..472 | 184 | 20.6 | Plus |
Dwil\GK22443-PA | 198 | GK22443-PA | 27..172 | 37..187 | 171 | 32.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22542-PA | 525 | GE22542-PA | 1..525 | 1..525 | 2782 | 98.5 | Plus |
Dyak\GE22547-PA | 497 | GE22547-PA | 1..497 | 1..525 | 2275 | 93.1 | Plus |
Dyak\GE19048-PA | 363 | GE19048-PA | 5..353 | 39..404 | 681 | 39.7 | Plus |
Dyak\Rpn7-PA | 389 | GE24035-PA | 64..373 | 150..472 | 189 | 21.3 | Plus |
Translation from 106 to 1683
> LD43563.hyp MPVLPMPPLMQNAVEPMQVDIAPPNEDNENNEEQQIVVENPSIDLEVYAN QYAGIVRLHRLIYVADVCPVLAVEALKMAITYVQTTYNVNLYQVLHKRLS DLNAGNAPAPPANAGGDQAGAAAPGPLAAAPLPDIAAQPVAQAQGQAQPA VEKDAFAYDAAWVDTKMKKAALKLEKLDSDLKNYKSNSIKESIRRGHDDL ADHYLSCGDLTNALKCYSRARDYCTSGKHVVNMCLNVIKVSIYLQNWAHV MSYISKAESTPDFAEGSKEANAQVHTRLECAAGLAELQQKKYKVAAKHFL NANFDHCDFPEMISTSNVAVYGGLCALATFDRQELKRLVIASTSFKLFLE LEPQLRDIIFKFYESKYASCLTLLDEIRDNLLVDMYIAPHVTTLYTKIRN RALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHN KILFAKEADQRNSTFERALIMGKQYQRHTRMLVLRAAMLKSHIHVKSISR EGGSNHGAELCVSAGSSTTAQLARI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CSN1b-PA | 525 | CG3889-PA | 1..525 | 1..525 | 2696 | 100 | Plus |
CSN1a-PA | 364 | CG4697-PA | 5..346 | 39..403 | 642 | 38.4 | Plus |
Rpn7-PA | 389 | CG5378-PA | 79..373 | 172..472 | 187 | 20.6 | Plus |