Clone LD43563 Report

Search the DGRC for LD43563

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:435
Well:63
Vector:pOT2
Associated Gene/TranscriptCSN1b-RA
Protein status:LD43563.pep: gold
Preliminary Size:1994
Sequenced Size:1792

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3889 2001-01-01 Release 2 assignment
CG3889 2001-07-04 Blastp of sequenced clone
CG3889 2003-01-01 Sim4 clustering to Release 3
CSN1b 2008-04-29 Release 5.5 accounting
CSN1b 2008-08-15 Release 5.9 accounting
CSN1b 2008-12-18 5.12 accounting

Clone Sequence Records

LD43563.complete Sequence

1792 bp (1792 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051972

> LD43563.complete
ATCGGTGTAAAATAATTTGCGAATCGGAAAAATTAATTGACGAATAAACA
AAAACGTAGCTTAAATTTTTCATTTTCCCTGGACTTTCGTTGCAAATAGA
AGCAGGATGCCCGTGCTGCCGATGCCACCACTCATGCAGAACGCCGTGGA
GCCGATGCAAGTGGACATCGCGCCGCCGAACGAGGACAACGAAAACAACG
AGGAGCAGCAGATTGTGGTGGAGAACCCCAGCATCGATCTCGAAGTGTAC
GCCAACCAATATGCCGGGATCGTGCGGCTCCATCGCCTAATTTATGTGGC
GGACGTCTGCCCGGTTTTAGCCGTGGAGGCTCTGAAAATGGCCATTACTT
ACGTTCAAACCACCTACAACGTAAATCTCTACCAAGTGCTGCACAAGCGC
TTGAGTGATCTAAACGCTGGAAATGCGCCTGCGCCACCAGCAAATGCTGG
CGGAGATCAGGCAGGAGCAGCGGCTCCCGGTCCCCTGGCAGCTGCTCCCC
TTCCGGATATCGCGGCACAACCTGTGGCTCAGGCTCAAGGACAGGCTCAA
CCCGCTGTCGAAAAGGATGCCTTCGCCTACGATGCCGCTTGGGTAGACAC
CAAGATGAAGAAGGCGGCTCTTAAGCTGGAGAAACTGGACTCAGACCTCA
AGAACTACAAGTCCAATTCGATCAAGGAGAGCATCCGGAGGGGCCACGAT
GACCTGGCTGACCACTACCTCAGTTGTGGCGACCTCACCAATGCCCTGAA
GTGCTATTCTCGGGCCAGAGACTACTGCACTAGTGGCAAGCATGTGGTAA
ACATGTGCCTTAACGTGATCAAGGTGTCAATTTATCTCCAGAATTGGGCC
CATGTGATGAGCTACATATCCAAGGCGGAAAGCACCCCGGACTTCGCCGA
GGGCTCCAAGGAGGCTAATGCCCAGGTTCATACTCGCCTTGAATGCGCTG
CTGGTCTGGCGGAACTGCAGCAAAAGAAATATAAGGTGGCCGCTAAGCAT
TTCCTCAATGCTAACTTCGATCACTGCGACTTTCCCGAAATGATCTCCAC
CAGCAATGTGGCGGTCTATGGTGGCCTCTGCGCCCTGGCCACCTTTGATC
GACAGGAGCTTAAGCGTCTGGTCATCGCCTCTACATCCTTTAAATTGTTC
TTAGAACTGGAGCCCCAACTCAGGGATATTATTTTCAAGTTCTACGAAAG
TAAATACGCCTCATGTCTGACGCTTCTGGATGAGATTAGGGACAACCTGC
TGGTTGACATGTACATTGCGCCCCATGTAACCACTCTGTATACCAAGATA
CGCAATCGCGCGCTAATCCAGTACTTTAGCCCCTATATGTCAGCTGATAT
GCACAAAATGGCCATGGCATTTAACTCGTCGGTGGGCGATCTGGAGAACG
AGGTGATGCAGTTGATATTAGACGGACAGATCCAGGCGCGTATTGACTCC
CACAATAAGATCCTGTTCGCCAAGGAGGCGGATCAAAGGAACAGCACCTT
TGAGCGGGCTTTGATCATGGGCAAGCAGTACCAGCGTCATACCCGCATGC
TTGTTCTTCGTGCTGCAATGCTCAAGAGCCACATCCACGTGAAGAGCATT
TCCCGGGAGGGTGGAAGCAACCACGGCGCCGAACTTTGCGTCTCCGCCGG
ATCCTCGACAACTGCTCAACTCGCCCGAATCTAGAGCAATTTAAAAGCAC
CACTTAATACCCAATAAATTTTTTAAGATATGTATATCACAAGCTGGCAA
AATAAATAATTATAGCAAAGCTAAAAAAAAAAAAAAAAAAAA

LD43563.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
CSN1b-RA 1993 CSN1b-RA 118..1891 1..1774 8870 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 18892688..18894322 1772..138 8160 99.9 Minus
chr3L 24539361 chr3L 18894393..18894531 139..1 680 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18903055..18904691 1774..138 8185 100 Minus
3L 28110227 3L 18904762..18904900 139..1 695 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 18896155..18897791 1774..138 8185 100 Minus
3L 28103327 3L 18897862..18898000 139..1 695 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:48:42 has no hits.

LD43563.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:49:23 Download gff for LD43563.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 18894393..18894531 1..139 99   Minus
chr3L 18892688..18894320 140..1772 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:13 Download gff for LD43563.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1b-RA 1..1578 107..1684 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:15:55 Download gff for LD43563.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1b-RA 1..1578 107..1684 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:02:13 Download gff for LD43563.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1b-RA 1..1578 107..1684 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:47:22 Download gff for LD43563.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1b-RA 1..1578 107..1684 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:06 Download gff for LD43563.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1b-RA 1..1578 107..1684 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:09:53 Download gff for LD43563.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1b-RA 118..1889 1..1772 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:15:55 Download gff for LD43563.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1b-RA 118..1889 1..1772 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:13 Download gff for LD43563.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1b-RA 31..1802 1..1772 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:47:22 Download gff for LD43563.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1b-RA 118..1889 1..1772 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:06 Download gff for LD43563.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1b-RA 31..1802 1..1772 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:49:23 Download gff for LD43563.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18903057..18904689 140..1772 100 <- Minus
3L 18904762..18904900 1..139 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:49:23 Download gff for LD43563.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18903057..18904689 140..1772 100 <- Minus
3L 18904762..18904900 1..139 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:49:23 Download gff for LD43563.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18903057..18904689 140..1772 100 <- Minus
3L 18904762..18904900 1..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:13 Download gff for LD43563.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18896157..18897789 140..1772 100 <- Minus
arm_3L 18897862..18898000 1..139 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:25:18 Download gff for LD43563.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18896157..18897789 140..1772 100 <- Minus
3L 18897862..18898000 1..139 100   Minus

LD43563.pep Sequence

Translation from 106 to 1683

> LD43563.pep
MPVLPMPPLMQNAVEPMQVDIAPPNEDNENNEEQQIVVENPSIDLEVYAN
QYAGIVRLHRLIYVADVCPVLAVEALKMAITYVQTTYNVNLYQVLHKRLS
DLNAGNAPAPPANAGGDQAGAAAPGPLAAAPLPDIAAQPVAQAQGQAQPA
VEKDAFAYDAAWVDTKMKKAALKLEKLDSDLKNYKSNSIKESIRRGHDDL
ADHYLSCGDLTNALKCYSRARDYCTSGKHVVNMCLNVIKVSIYLQNWAHV
MSYISKAESTPDFAEGSKEANAQVHTRLECAAGLAELQQKKYKVAAKHFL
NANFDHCDFPEMISTSNVAVYGGLCALATFDRQELKRLVIASTSFKLFLE
LEPQLRDIIFKFYESKYASCLTLLDEIRDNLLVDMYIAPHVTTLYTKIRN
RALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHN
KILFAKEADQRNSTFERALIMGKQYQRHTRMLVLRAAMLKSHIHVKSISR
EGGSNHGAELCVSAGSSTTAQLARI*

LD43563.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10799-PA 524 GF10799-PA 1..524 1..525 2489 95 Plus
Dana\GF14895-PA 345 GF14895-PA 22..325 38..401 519 35.9 Plus
Dana\GF16564-PA 389 GF16564-PA 79..373 172..472 195 21.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13444-PA 525 GG13444-PA 1..525 1..525 2787 98.7 Plus
Dere\GG25130-PA 361 GG25130-PA 9..341 43..401 661 39.6 Plus
Dere\GG12513-PA 389 GG12513-PA 64..373 150..472 184 20.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16963-PA 537 GH16963-PA 1..537 1..525 2294 87 Plus
Dgri\GH10900-PA 417 GH10900-PA 37..378 31..401 624 37.5 Plus
Dgri\GH18475-PA 389 GH18475-PA 63..373 162..472 184 20.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
CSN1b-PA 525 CG3889-PA 1..525 1..525 2696 100 Plus
CSN1a-PA 364 CG4697-PA 5..346 39..403 642 38.4 Plus
Rpn7-PA 389 CG5378-PA 79..373 172..472 187 20.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11827-PA 526 GI11827-PA 1..526 1..525 2289 89.8 Plus
Dmoj\GI13139-PA 413 GI13139-PA 28..373 37..399 598 36.6 Plus
Dmoj\GI10792-PA 389 GI10792-PA 81..373 174..472 186 20.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22061-PA 520 GL22061-PA 1..520 1..525 2434 90.3 Plus
Dper\GL24316-PA 467 GL24316-PA 3..466 1..507 1403 56.8 Plus
Dper\GL26006-PA 399 GL26006-PA 22..368 36..401 591 37.2 Plus
Dper\GL23337-PA 389 GL23337-PA 71..373 165..472 189 21 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17754-PA 520 GA17754-PA 1..520 1..525 2434 90.3 Plus
Dpse\GA26568-PA 461 GA26568-PA 3..460 1..507 1453 57.8 Plus
Dpse\GA18363-PA 399 GA18363-PA 22..368 36..401 594 36.2 Plus
Dpse\GA18834-PA 389 GA18834-PA 79..373 172..472 185 20.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14913-PA 525 GM14913-PA 1..525 1..525 2812 99.4 Plus
Dsec\GM15765-PA 364 GM15765-PA 4..346 38..403 669 38.1 Plus
Dsec\GM23647-PA 389 GM23647-PA 79..373 172..472 188 20.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12321-PA 293 GD12321-PA 1..293 233..525 1569 99.7 Plus
Dsim\GD12320-PA 219 GD12320-PA 1..176 1..176 895 97.2 Plus
Dsim\GD23977-PA 364 GD23977-PA 4..346 38..403 670 39.1 Plus
Dsim\GD18456-PA 389 GD18456-PA 79..373 172..472 188 20.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13527-PA 529 GJ13527-PA 1..529 1..525 2325 88.3 Plus
Dvir\GJ11753-PA 408 GJ11753-PA 17..369 30..401 606 37.4 Plus
Dvir\GJ14389-PA 389 GJ14389-PA 81..373 174..472 186 19.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12634-PA 526 GK12634-PA 1..526 1..525 2369 88.3 Plus
Dwil\GK18078-PA 394 GK18078-PA 27..382 37..401 631 39.2 Plus
Dwil\GK11396-PA 389 GK11396-PA 79..373 172..472 184 20.6 Plus
Dwil\GK22443-PA 198 GK22443-PA 27..172 37..187 171 32.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22542-PA 525 GE22542-PA 1..525 1..525 2782 98.5 Plus
Dyak\GE22547-PA 497 GE22547-PA 1..497 1..525 2275 93.1 Plus
Dyak\GE19048-PA 363 GE19048-PA 5..353 39..404 681 39.7 Plus
Dyak\Rpn7-PA 389 GE24035-PA 64..373 150..472 189 21.3 Plus

LD43563.hyp Sequence

Translation from 106 to 1683

> LD43563.hyp
MPVLPMPPLMQNAVEPMQVDIAPPNEDNENNEEQQIVVENPSIDLEVYAN
QYAGIVRLHRLIYVADVCPVLAVEALKMAITYVQTTYNVNLYQVLHKRLS
DLNAGNAPAPPANAGGDQAGAAAPGPLAAAPLPDIAAQPVAQAQGQAQPA
VEKDAFAYDAAWVDTKMKKAALKLEKLDSDLKNYKSNSIKESIRRGHDDL
ADHYLSCGDLTNALKCYSRARDYCTSGKHVVNMCLNVIKVSIYLQNWAHV
MSYISKAESTPDFAEGSKEANAQVHTRLECAAGLAELQQKKYKVAAKHFL
NANFDHCDFPEMISTSNVAVYGGLCALATFDRQELKRLVIASTSFKLFLE
LEPQLRDIIFKFYESKYASCLTLLDEIRDNLLVDMYIAPHVTTLYTKIRN
RALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHN
KILFAKEADQRNSTFERALIMGKQYQRHTRMLVLRAAMLKSHIHVKSISR
EGGSNHGAELCVSAGSSTTAQLARI*

LD43563.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
CSN1b-PA 525 CG3889-PA 1..525 1..525 2696 100 Plus
CSN1a-PA 364 CG4697-PA 5..346 39..403 642 38.4 Plus
Rpn7-PA 389 CG5378-PA 79..373 172..472 187 20.6 Plus