Clone LD43576 Report

Search the DGRC for LD43576

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:435
Well:76
Vector:pOT2
Associated Gene/TranscriptCG32425-RC
Protein status:LD43576.pep: gold
Preliminary Size:950
Sequenced Size:2066

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32425 2002-12-10 Blastp of sequenced clone
CG32425 2003-01-01 Sim4 clustering to Release 3
CG32425 2008-04-29 Release 5.5 accounting
CG32425 2008-08-15 Release 5.9 accounting
CG32425 2008-12-18 5.12 accounting

Clone Sequence Records

LD43576.complete Sequence

2066 bp (2066 high quality bases) assembled on 2002-12-10

GenBank Submission: BT003572

> LD43576.complete
TCCGATTTTTCTTCCTTTGCGACCAGGAGCTTTTCTGCAGCAGTTTCCTC
CGAAACTTACGCCCGTGCAGATTTATGGCCGGAAAATCATATTAATTGCA
ACTCGAAGGCCGTTTTAACGCCCCCTCAGCCGCCGGCGCCGCCACCTCCT
CCTCCCCAAGCCAACAACAACAGCAAGGCCATCTTGGAGTGCATCAACTT
CATGGCAGAGACCAATAAAGTCCGTCTCCTCAGGGGTTATCTCTACGCCG
GGGAGCTGCGTCAATTAACGGCGGGCGGTAGTAAGACCGCGTGCCAGGAG
CTATCACTTGAGCCCTTCTGGCAGCCGCAGCCACTGCTGAGCAAGTTAAC
CGATGGGGGATCCTTCGAGCTGCAGGAGCAATTCGCCATCATCAATGATG
AGCGCTTCCTGCAGAGCGTCGAGCGGCAGCAGCTGGTCATGGAGCTGCGT
CCATTGGGAGGAGTCGTACGACTTCCGCTGCACCAGTTCTTCATCGCCTA
CAGAGACTCCAGCATCACAAATCACCTGTGCAAGGGAAAGCTACCAGTGA
TCTCCATCGATGGCTGGGCACCAATTGTCAGTGCTGAGAACAAGACGCCT
CTGGGCGAGCTCAAGGTGCTTCTGGCCATTGGAAGTGAGTCGCAGATTGC
TCAACTGAAGCAGCTGCGTGGCTTCGACCATGACAACAACCAAGTACCGG
CTCCAAGCCGGACCACAGACTTACTCGACATGCTTCAAAATGCCATCGCA
GCTCCGACGCCGAATATCGCAGGTCCAGTAATGCCGCCGCCACCGGCTCC
TCCAGCGCCCAGTACCTTTAGCTTCCAGTTGCGCATCGTGGGAGCTGCTG
GACTGCCCCTAAATCCCGGCTATGGGAAATCGAAGAAGCAAGTAAAACGT
CAGTCGGCAGCCAAGCGCTTCCCGCCCAACGAACCTCCCAACACCTATGT
GACCTTCCAGGCCATCAGTTGCAATAGTCAGACCTATAAGTCGCACGAAG
GATTGGTGTACGCCACACCAATTGTACCCAAATCGACGAAGCCCCAGTGG
CTTAGCAAGTTCCGCGTGGACGTGAGTCGCGATTATCGCAGCAATCCCCA
GAAGCTTTTCATTCTGAAGCTTTGGAAAAAGGCGGTTGTTAGCCCAAATG
GCATCACAGAGCCGTCTCCCCATGAAGATGCCATAATAGGATTCGCTGCA
CTTAATCTTAACCAAAAACAAGCGGGCGGAGGCTTTCCCAGCGGATGGCA
TAACATAGTAGACTTCAATGGACGTGTGACTGGGGGAATCGAGGCGCACG
TGGAGCCCATATCGCCCAGTGTAGATACCGTAATCGATCAGTTCGAGAAG
TCCATGGAACTGGGTCACTTGCAGTTGGGCCAGGCCATCAAGCGCAAATA
CACGGAGCTGGAGGAGATCTCGCAGAGATTGCGATCTCGGCTGGTGGATG
TGACGGGGGAAACGCTGAAGTTCCCGGAATTCGATGTCGACTCCGCATTG
GACAGTTGGCAACAGGAGGGAGATGACGATGATTTAGCGGAGGACTTTGA
ACGCTCCCTACGCACTCCCACGCCCCCTGGCTCGCCAACGCCCTCCACCA
GCACCGCCGCACAAAATCTCAGAAACTCGAACGGTCAGGAATAGCCCAGG
GCCAAAAGTCAGTTAAGAATGTTTTTTCCTCTCTCCACATCTCGATGTCG
TCTCTGATATTGGCTCAAATGGTAGCTATAGTTAACCATCTAGATTTAGG
CAATATATATATATATAATGCGCGGATCTTAATCTGATCTGATATTATGC
TGTACTTAAATTGGCATCCCAGTTTTGCCTCGATTCACCGTCTTATGGCT
GTCTATATAGCATAAAATCAAAGCTAGCAACGATCACCCAGCGATCGTTT
CATTGAGTTACAAATCGTCGATTGAATATTGTTTTAAGTCACGAGGATTT
TTCCCAGCAACCACACGGAATATGTATTAGTTTCGGAACTGTGTTAATCA
CCTAAGTATTTAGACACTATTACCTAATAAAACTTTAAATAAAATTACAA
AAAAAAAAAAAAAAAA

LD43576.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32425-RC 2343 CG32425-RC 72..2121 1..2050 10250 100 Plus
CG32425-RE 3083 CG32425-RE 903..2861 92..2050 9795 100 Plus
CG32425.a 2818 CG32425.a 840..2798 92..2050 9795 100 Plus
CG32425-RE 3083 CG32425-RE 62..152 1..91 455 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20502128..20503080 1096..2048 4750 99.9 Plus
chr3L 24539361 chr3L 20501509..20502065 539..1095 2785 100 Plus
chr3L 24539361 chr3L 20500927..20501375 92..540 2245 100 Plus
chr3L 24539361 chr3L 20486315..20486405 1..91 455 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20513138..20514092 1096..2050 4775 100 Plus
3L 28110227 3L 20512519..20513075 539..1095 2785 100 Plus
3L 28110227 3L 20511937..20512385 92..540 2245 100 Plus
3L 28110227 3L 20497335..20497425 1..91 455 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20506238..20507192 1096..2050 4775 100 Plus
3L 28103327 3L 20505619..20506175 539..1095 2785 100 Plus
3L 28103327 3L 20505037..20505485 92..540 2245 100 Plus
3L 28103327 3L 20490435..20490525 1..91 455 100 Plus
Blast to na_te.dros performed on 2019-03-16 01:35:10 has no hits.

LD43576.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:36:26 Download gff for LD43576.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20486315..20486405 1..91 100 -> Plus
chr3L 20500927..20501375 92..540 100 -> Plus
chr3L 20501511..20502065 541..1095 100 -> Plus
chr3L 20502128..20503080 1096..2048 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:59:41 Download gff for LD43576.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RA 725..2280 88..1644 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:01:45 Download gff for LD43576.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RA 725..2280 88..1644 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:07:47 Download gff for LD43576.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RE 725..2280 88..1644 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:52:11 Download gff for LD43576.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RA 725..2280 88..1644 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:36:39 Download gff for LD43576.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RE 725..2280 88..1644 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:39 Download gff for LD43576.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RC 24..2071 1..2048 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:01:45 Download gff for LD43576.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RC 24..2071 1..2048 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:07:47 Download gff for LD43576.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RC 13..2060 1..2048 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:52:11 Download gff for LD43576.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RC 24..2071 1..2048 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:36:39 Download gff for LD43576.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RC 13..2060 1..2048 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:26 Download gff for LD43576.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20497335..20497425 1..91 100 -> Plus
3L 20511937..20512385 92..540 100 -> Plus
3L 20512521..20513075 541..1095 100 -> Plus
3L 20513138..20514090 1096..2048 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:26 Download gff for LD43576.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20497335..20497425 1..91 100 -> Plus
3L 20511937..20512385 92..540 100 -> Plus
3L 20512521..20513075 541..1095 100 -> Plus
3L 20513138..20514090 1096..2048 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:26 Download gff for LD43576.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20497335..20497425 1..91 100 -> Plus
3L 20511937..20512385 92..540 100 -> Plus
3L 20512521..20513075 541..1095 100 -> Plus
3L 20513138..20514090 1096..2048 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:07:47 Download gff for LD43576.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20490435..20490525 1..91 100 -> Plus
arm_3L 20505037..20505485 92..540 100 -> Plus
arm_3L 20505621..20506175 541..1095 100 -> Plus
arm_3L 20506238..20507190 1096..2048 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:24:08 Download gff for LD43576.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20505037..20505485 92..540 100 -> Plus
3L 20505621..20506175 541..1095 100 -> Plus
3L 20506238..20507190 1096..2048 100   Plus
3L 20490435..20490525 1..91 100 -> Plus

LD43576.hyp Sequence

Translation from 0 to 1643

> LD43576.hyp
SDFSSFATRSFSAAVSSETYARADLWPENHINCNSKAVLTPPQPPAPPPP
PPQANNNSKAILECINFMAETNKVRLLRGYLYAGELRQLTAGGSKTACQE
LSLEPFWQPQPLLSKLTDGGSFELQEQFAIINDERFLQSVERQQLVMELR
PLGGVVRLPLHQFFIAYRDSSITNHLCKGKLPVISIDGWAPIVSAENKTP
LGELKVLLAIGSESQIAQLKQLRGFDHDNNQVPAPSRTTDLLDMLQNAIA
APTPNIAGPVMPPPPAPPAPSTFSFQLRIVGAAGLPLNPGYGKSKKQVKR
QSAAKRFPPNEPPNTYVTFQAISCNSQTYKSHEGLVYATPIVPKSTKPQW
LSKFRVDVSRDYRSNPQKLFILKLWKKAVVSPNGITEPSPHEDAIIGFAA
LNLNQKQAGGGFPSGWHNIVDFNGRVTGGIEAHVEPISPSVDTVIDQFEK
SMELGHLQLGQAIKRKYTELEEISQRLRSRLVDVTGETLKFPEFDVDSAL
DSWQQEGDDDDLAEDFERSLRTPTPPGSPTPSTSTAAQNLRNSNGQE*

LD43576.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG32425-PA 759 CG32425-PA 243..759 31..547 2707 99.8 Plus
CG32425-PE 759 CG32425-PE 243..759 31..547 2707 99.8 Plus
CG32425-PC 480 CG32425-PC 1..480 68..547 2500 100 Plus

LD43576.pep Sequence

Translation from 201 to 1643

> LD43576.pep
MAETNKVRLLRGYLYAGELRQLTAGGSKTACQELSLEPFWQPQPLLSKLT
DGGSFELQEQFAIINDERFLQSVERQQLVMELRPLGGVVRLPLHQFFIAY
RDSSITNHLCKGKLPVISIDGWAPIVSAENKTPLGELKVLLAIGSESQIA
QLKQLRGFDHDNNQVPAPSRTTDLLDMLQNAIAAPTPNIAGPVMPPPPAP
PAPSTFSFQLRIVGAAGLPLNPGYGKSKKQVKRQSAAKRFPPNEPPNTYV
TFQAISCNSQTYKSHEGLVYATPIVPKSTKPQWLSKFRVDVSRDYRSNPQ
KLFILKLWKKAVVSPNGITEPSPHEDAIIGFAALNLNQKQAGGGFPSGWH
NIVDFNGRVTGGIEAHVEPISPSVDTVIDQFEKSMELGHLQLGQAIKRKY
TELEEISQRLRSRLVDVTGETLKFPEFDVDSALDSWQQEGDDDDLAEDFE
RSLRTPTPPGSPTPSTSTAAQNLRNSNGQE*

LD43576.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10352-PA 739 GF10352-PA 276..739 1..480 1613 71.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16125-PA 758 GG16125-PA 280..758 1..480 2293 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14555-PA 879 GH14555-PA 384..848 1..454 1614 69.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG32425-PA 759 CG32425-PA 280..759 1..480 2500 100 Plus
CG32425-PE 759 CG32425-PE 280..759 1..480 2500 100 Plus
CG32425-PC 480 CG32425-PC 1..480 1..480 2500 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13403-PA 967 GI13403-PA 483..962 1..470 1541 63.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12797-PA 577 GL12797-PA 303..569 1..267 880 66.9 Plus
Dper\GL20474-PA 93 GL20474-PA 1..58 346..399 219 72.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16893-PA 764 GA16893-PA 273..742 1..454 1769 73.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22304-PA 742 GM22304-PA 264..742 1..480 2481 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14897-PA 758 GD14897-PA 280..758 1..480 2490 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11527-PA 780 GJ11527-PA 289..751 1..459 1672 69.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12297-PA 907 GK12297-PA 393..883 1..454 1543 63.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19693-PA 758 GE19693-PA 280..758 1..480 2249 93.5 Plus
Dyak\GE23239-PA 367 GE23239-PA 1..367 114..480 1698 93.5 Plus