Clone LD43587 Report

Search the DGRC for LD43587

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:435
Well:87
Vector:pOT2
Associated Gene/TranscriptCG2790-RA
Protein status:LD43587.pep: gold
Sequenced Size:1750

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2790 2003-01-01 Sim4 clustering to Release 3
CG2790 2005-01-26 Blastp of sequenced clone
CG2790 2008-04-29 Release 5.5 accounting
CG2790 2008-08-15 Release 5.9 accounting
CG2790 2008-12-18 5.12 accounting

Clone Sequence Records

LD43587.complete Sequence

1750 bp (1750 high quality bases) assembled on 2005-01-26

GenBank Submission: BT021377

> LD43587.complete
AAACATGCGTTGCTATTACGAGGAGCTCGAGCTCCAAAGAAACGCCAACG
ATGGGGACATCAAGAGTGCGTACCGTAAGATGGCCCTGCGCTGGCACCCG
GACAAGAATCCCGACCGACTGGCGGAGGCCAAAGAGCGCTTCCAGCTGAT
CCAGCAAGCGTATGAAGTTCTGTCTGATCCTCAGGAACGGTCTTGGTACG
ACAACCATCGCGAGCAGATCTTGCGCGGCAAGAACTCCGATTATGCGGAG
AACTGCCTGGACGTGTTCCAGTTCTTCACGAGCTCCTGTTACAAGGGCTA
TGGCGACAATGAGCACGGCTTTTACCGCGTGTACACCGATGTCTTCGTCC
AAATCGCCTCGGAGGACTTAGAGTTCATGGACAAGGACGACCGGTTGGGG
ATGGCGCCTGACTTTGGTCATTCAAACAGTAGTTACGAAGATGTGGTGGG
TCCGTTCTACGCCTTTTGGCAGGCATACAGTACCCGGAAGACCTACGACT
GGCTGTGTCCCTACGATGTTCGCGAAATAAAAGAGCGCTTTATCCTACGC
AAGGTGGAGAAGGAGATGAAAAAGATCGTTCAGGCTGCCCGCAAGGAACG
CAACGAAGAGGTTCGCAACTTAGTCAACTTTGTGCGAAAAAGGGATCCCA
GAGTGCAGGCCTACAGGCGCATGCTTGAGGAACGCGTCGAGGCCAATCGA
CTTAAGCAGGAGGAGAAGCGCAAAGAGCAGTTAAGGAAGCGCCAGGAAGA
ACTGGCAGCCGTCAGGAAAAATAATGTCTTTAACGAGGGCTACGAGGAGC
AGCTAAAGCAGTTAGAGCAGCAGTACGATAGCAAGTCAGAAGATTACACG
GATGAAGACGAGAACGACGACGATGGCGAGGACTTTGACCATGAAGGCGG
CCAGGAAGCCGAGGAGTACGAAGTGGAGTATGTAGACGATCTTTACTGCG
TGGCATGCAACAAGACATTTAAAAACGCCAAGGCGCGTGCTAATCACGAA
GAAAGCAAGAAGCATAATGAAAATGTCGACCGGCTGTGTCAGGAAATGGA
GGAAGAAGAGGACGCTTTCCACAATGAACCCCATGAAGACAGTTTAATGG
GCGTACAGGAATCGCTGGAAGAATTGCAAGTCTCTGAGGATCAGATATCT
TTCGACGGGGTTCCAAGCGAAGAAGAATCTTCGCTAGCCAAACGAACCAA
AAAAAACAAAAAGGCAAGGAAGTCAGCTGTCAAGCAAGCGCAGGCGGAAG
GCAGTGACGAACCAGATGAGCCAATAGAAAAGAAGGCAATCAAGAGCGAG
TCAGAGGATGAAGACTGGAGTAAAGGCAAAAAAGCGAGCAAAAAGAGTAA
AAGCAAAAAGACGACGACTAGGAAGGTTAAGCTATTAGAGCAAACTGTTT
CGGAACCGAATACAAAGGAGGCAACAGTGGCTCCCAAAAGCGGAGATGAG
GACCTCGACCCGACCAAGTCGCAACACACTTGTGTTACCTGTAGGCTTGT
CTTTGACTCCAAGAACAAGCTGTTTGCCCACCTAAAGAAGACGAACCATG
GTGTCTACATACCTAAGGCAAAGCCTAATGTTGAGGGCAAGCCTCCTGGC
AAAGCTAAGGGCAAGCGCAACAAGTAGGGTCGTATAGATATCCACCCACA
CCTTGTATCTATACTGTAGAATGTTAAAAGTTTATTTATGCTAATGATAA
ATTTAATTCGAGAATGAAGTTAAGTATGCTCGCTCCAAAAAAAAAAAAAA

LD43587.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2790-RA 1967 CG2790-RA 156..1893 1..1738 8690 100 Plus
CG3770-RA 1597 CG3770-RA 1515..1597 1738..1656 415 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20832510..20833637 1736..609 5625 99.9 Minus
chr2R 21145070 chr2R 20833695..20834306 612..1 3030 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:38:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24946559..24947688 1738..609 5650 100 Minus
2R 25286936 2R 24947746..24948357 612..1 3060 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24947758..24948887 1738..609 5650 100 Minus
2R 25260384 2R 24948945..24949556 612..1 3060 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:31:09 has no hits.

LD43587.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:32:03 Download gff for LD43587.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20832510..20833635 611..1736 99 <- Minus
chr2R 20833697..20834306 1..610 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:15 Download gff for LD43587.complete
Subject Subject Range Query Range Percent Splice Strand
CG2790-RA 1..1623 5..1627 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:13:23 Download gff for LD43587.complete
Subject Subject Range Query Range Percent Splice Strand
CG2790-RA 1..1623 5..1627 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:23:14 Download gff for LD43587.complete
Subject Subject Range Query Range Percent Splice Strand
CG2790-RA 1..1623 5..1627 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:57:51 Download gff for LD43587.complete
Subject Subject Range Query Range Percent Splice Strand
CG2790-RA 1..1623 5..1627 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:26:09 Download gff for LD43587.complete
Subject Subject Range Query Range Percent Splice Strand
CG2790-RA 1..1623 5..1627 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:09:34 Download gff for LD43587.complete
Subject Subject Range Query Range Percent Splice Strand
CG2790-RA 19..1754 1..1736 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:13:23 Download gff for LD43587.complete
Subject Subject Range Query Range Percent Splice Strand
CG2790-RA 19..1754 1..1736 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:23:14 Download gff for LD43587.complete
Subject Subject Range Query Range Percent Splice Strand
CG2790-RA 22..1757 1..1736 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:57:51 Download gff for LD43587.complete
Subject Subject Range Query Range Percent Splice Strand
CG2790-RA 19..1754 1..1736 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:26:09 Download gff for LD43587.complete
Subject Subject Range Query Range Percent Splice Strand
CG2790-RA 22..1757 1..1736 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:03 Download gff for LD43587.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24946561..24947686 611..1736 100 <- Minus
2R 24947748..24948357 1..610 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:03 Download gff for LD43587.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24946561..24947686 611..1736 100 <- Minus
2R 24947748..24948357 1..610 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:03 Download gff for LD43587.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24946561..24947686 611..1736 100 <- Minus
2R 24947748..24948357 1..610 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:23:14 Download gff for LD43587.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20834084..20835209 611..1736 100 <- Minus
arm_2R 20835271..20835880 1..610 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:33:20 Download gff for LD43587.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24947778..24948903 611..1736 100 <- Minus
2R 24948965..24949574 1..610 100   Minus

LD43587.hyp Sequence

Translation from 0 to 1626

> LD43587.hyp
NMRCYYEELELQRNANDGDIKSAYRKMALRWHPDKNPDRLAEAKERFQLI
QQAYEVLSDPQERSWYDNHREQILRGKNSDYAENCLDVFQFFTSSCYKGY
GDNEHGFYRVYTDVFVQIASEDLEFMDKDDRLGMAPDFGHSNSSYEDVVG
PFYAFWQAYSTRKTYDWLCPYDVREIKERFILRKVEKEMKKIVQAARKER
NEEVRNLVNFVRKRDPRVQAYRRMLEERVEANRLKQEEKRKEQLRKRQEE
LAAVRKNNVFNEGYEEQLKQLEQQYDSKSEDYTDEDENDDDGEDFDHEGG
QEAEEYEVEYVDDLYCVACNKTFKNAKARANHEESKKHNENVDRLCQEME
EEEDAFHNEPHEDSLMGVQESLEELQVSEDQISFDGVPSEEESSLAKRTK
KNKKARKSAVKQAQAEGSDEPDEPIEKKAIKSESEDEDWSKGKKASKKSK
SKKTTTRKVKLLEQTVSEPNTKEATVAPKSGDEDLDPTKSQHTCVTCRLV
FDSKNKLFAHLKKTNHGVYIPKAKPNVEGKPPGKAKGKRNK*

LD43587.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2790-PA 540 CG2790-PA 1..540 2..541 2853 100 Plus
mrj-PA 259 CG8448-PA 4..92 5..91 216 46.1 Plus
mrj-PC 259 CG8448-PC 4..92 5..91 216 46.1 Plus
mrj-PB 259 CG8448-PB 4..92 5..91 216 46.1 Plus
mrj-PD 259 CG8448-PD 4..92 5..91 216 46.1 Plus

LD43587.pep Sequence

Translation from 4 to 1626

> LD43587.pep
MRCYYEELELQRNANDGDIKSAYRKMALRWHPDKNPDRLAEAKERFQLIQ
QAYEVLSDPQERSWYDNHREQILRGKNSDYAENCLDVFQFFTSSCYKGYG
DNEHGFYRVYTDVFVQIASEDLEFMDKDDRLGMAPDFGHSNSSYEDVVGP
FYAFWQAYSTRKTYDWLCPYDVREIKERFILRKVEKEMKKIVQAARKERN
EEVRNLVNFVRKRDPRVQAYRRMLEERVEANRLKQEEKRKEQLRKRQEEL
AAVRKNNVFNEGYEEQLKQLEQQYDSKSEDYTDEDENDDDGEDFDHEGGQ
EAEEYEVEYVDDLYCVACNKTFKNAKARANHEESKKHNENVDRLCQEMEE
EEDAFHNEPHEDSLMGVQESLEELQVSEDQISFDGVPSEEESSLAKRTKK
NKKARKSAVKQAQAEGSDEPDEPIEKKAIKSESEDEDWSKGKKASKKSKS
KKTTTRKVKLLEQTVSEPNTKEATVAPKSGDEDLDPTKSQHTCVTCRLVF
DSKNKLFAHLKKTNHGVYIPKAKPNVEGKPPGKAKGKRNK*

LD43587.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11522-PA 539 GF11522-PA 1..539 1..540 1865 71.5 Plus
Dana\GF12761-PA 351 GF12761-PA 1..67 1..67 198 53.7 Plus
Dana\GF19555-PA 334 GF19555-PA 5..78 4..79 176 47.4 Plus
Dana\GF15175-PA 346 GF15175-PA 5..119 4..131 175 35.2 Plus
Dana\GF10972-PA 250 GF10972-PA 19..81 5..68 165 48.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19872-PA 539 GG19872-PA 1..539 1..540 2417 91.3 Plus
Dere\GG22292-PA 353 GG22292-PA 1..66 1..66 207 56.1 Plus
Dere\GG18918-PA 332 GG18918-PA 5..110 4..110 191 40.7 Plus
Dere\GG19654-PA 403 GG19654-PA 7..96 4..94 180 42.6 Plus
Dere\GG24779-PA 350 GG24779-PA 5..77 4..78 171 46.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22046-PA 560 GH22046-PA 1..378 1..380 1422 72.2 Plus
Dgri\GH22993-PA 360 GH22993-PA 1..66 1..66 208 56.1 Plus
Dgri\GH16902-PA 127 GH16902-PA 5..94 4..93 175 41.3 Plus
Dgri\GH11404-PA 346 GH11404-PA 5..119 4..131 173 33.6 Plus
Dgri\GH19043-PA 405 GH19043-PA 7..81 4..82 168 43 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG2790-PA 540 CG2790-PA 1..540 1..540 2853 100 Plus
mrj-PA 259 CG8448-PA 4..92 4..90 216 46.1 Plus
mrj-PC 259 CG8448-PC 4..92 4..90 216 46.1 Plus
mrj-PB 259 CG8448-PB 4..92 4..90 216 46.1 Plus
mrj-PD 259 CG8448-PD 4..92 4..90 216 46.1 Plus
mrj-PG 346 CG8448-PG 4..66 4..66 208 57.1 Plus
mrj-PH 346 CG8448-PH 4..66 4..66 208 57.1 Plus
mrj-PE 346 CG8448-PE 4..66 4..66 208 57.1 Plus
DnaJ-1-PA 334 CG10578-PA 5..74 4..75 186 51.4 Plus
DnaJ-1-PB 334 CG10578-PB 5..74 4..75 186 51.4 Plus
CG2887-PA 342 CG2887-PA 5..102 4..105 184 41.2 Plus
Droj2-PE 403 CG8863-PE 7..101 4..100 183 41.4 Plus
Droj2-PD 403 CG8863-PD 7..101 4..100 183 41.4 Plus
Droj2-PC 403 CG8863-PC 7..101 4..100 183 41.4 Plus
Droj2-PB 403 CG8863-PB 7..101 4..100 183 41.4 Plus
Droj2-PA 403 CG8863-PA 7..101 4..100 183 41.4 Plus
CG2839-PA 826 CG2839-PA 263..543 156..472 176 23.7 Plus
CG5001-PC 346 CG5001-PC 5..73 4..74 174 49.3 Plus
CG5001-PD 350 CG5001-PD 5..73 4..74 174 49.3 Plus
CG5001-PA 350 CG5001-PA 5..73 4..74 174 49.3 Plus
CG5001-PB 350 CG5001-PB 5..73 4..74 174 49.3 Plus
CG7130-PA 128 CG7130-PA 5..73 4..74 169 46.5 Plus
CG2839-PA 826 CG2839-PA 414..772 173..505 168 23.6 Plus
CG2839-PA 826 CG2839-PA 310..592 174..457 165 23.2 Plus
CG2839-PA 826 CG2839-PA 395..676 182..471 165 19.9 Plus
Csp-PA 223 CG6395-PA 19..81 5..68 161 46.9 Plus
Csp-PC 228 CG6395-PC 19..81 5..68 161 46.9 Plus
Csp-PE 244 CG6395-PE 19..81 5..68 161 46.9 Plus
Csp-PD 244 CG6395-PD 19..81 5..68 161 46.9 Plus
Csp-PF 249 CG6395-PF 19..81 5..68 161 46.9 Plus
Csp-PB 249 CG6395-PB 19..81 5..68 161 46.9 Plus
CG2839-PA 826 CG2839-PA 306..580 182..457 160 21.2 Plus
CG2839-PA 826 CG2839-PA 346..636 174..472 159 20.9 Plus
shv-PA 354 CG4164-PA 24..95 2..74 158 43.8 Plus
CG2839-PA 826 CG2839-PA 373..672 182..472 157 22.2 Plus
DnaJ-H-PA 389 CG9828-PA 7..85 5..91 155 43.7 Plus
DnaJ-H-PB 389 CG9828-PB 7..85 5..91 155 43.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19132-PA 550 GI19132-PA 1..550 1..540 1658 63.7 Plus
Dmoj\GI18961-PA 355 GI18961-PA 1..66 1..66 217 57.6 Plus
Dmoj\GI15199-PA 325 GI15199-PA 5..123 4..125 185 38.1 Plus
Dmoj\GI13174-PA 352 GI13174-PA 5..73 4..74 170 49.3 Plus
Dmoj\GI11373-PA 249 GI11373-PA 16..80 3..68 164 47 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10893-PA 548 GL10893-PA 1..548 1..540 1824 72.2 Plus
Dper\GL10681-PA 357 GL10681-PA 1..66 1..66 215 57.6 Plus
Dper\GL15626-PA 318 GL15626-PA 5..89 4..90 183 44.8 Plus
Dper\GL20776-PA 230 GL20776-PA 5..74 4..75 175 48.6 Plus
Dper\GL25452-PA 129 GL25452-PA 5..95 4..93 164 38.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15463-PA 548 GA15463-PA 1..548 1..540 1828 71.2 Plus
Dpse\GA21086-PA 357 GA21086-PA 1..66 1..66 215 57.6 Plus
Dpse\GA18584-PA 346 GA18584-PA 5..103 4..110 178 39.3 Plus
Dpse\GA10408-PA 353 GA10408-PA 5..74 4..75 175 48.6 Plus
Dpse\GA21376-PA 404 GA21376-PA 7..81 4..82 169 43 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11774-PA 540 GM11774-PA 1..540 1..540 2787 96.5 Plus
Dsec\GM20081-PA 344 GM20081-PA 1..66 1..66 206 56.1 Plus
Dsec\GM11309-PA 344 GM11309-PA 5..86 4..83 182 46.4 Plus
Dsec\DnaJ-1-PA 337 GM13903-PA 5..74 4..75 178 50 Plus
Dsec\GM22099-PA 128 GM22099-PA 5..95 4..93 171 39.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25559-PA 346 GD25559-PA 1..66 1..66 206 56.1 Plus
Dsim\GD16032-PA 300 GD16032-PA 5..89 4..90 191 46 Plus
Dsim\GD12075-PA 128 GD12075-PA 5..73 4..74 170 47.9 Plus
Dsim\GD23083-PA 346 GD23083-PA 5..119 4..131 170 34.4 Plus
Dsim\GD18906-PA 403 GD18906-PA 7..81 4..82 168 43 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22265-PA 557 GJ22265-PA 1..383 1..377 1412 71.8 Plus
Dvir\GJ21568-PA 352 GJ21568-PA 1..66 1..66 216 57.6 Plus
Dvir\GJ14805-PA 325 GJ14805-PA 5..127 4..129 190 38.8 Plus
Dvir\GJ16971-PA 347 GJ16971-PA 5..73 4..74 176 50.7 Plus
Dvir\GJ11775-PA 124 GJ11775-PA 5..110 4..92 169 37 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20727-PA 551 GK20727-PA 1..545 1..538 1691 63.2 Plus
Dwil\GK17894-PA 352 GK17894-PA 1..66 1..66 215 57.6 Plus
Dwil\GK19767-PA 330 GK19767-PA 5..137 4..135 182 34.8 Plus
Dwil\GK15183-PA 346 GK15183-PA 5..91 4..90 176 44.9 Plus
Dwil\GK19161-PA 125 GK19161-PA 3..80 2..81 168 46.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11397-PA 542 GE11397-PA 1..542 1..540 2365 90.8 Plus
Dyak\GE14089-PA 351 GE14089-PA 1..66 1..66 207 56.1 Plus
Dyak\DnaJ-1-PA 351 GE20542-PA 5..141 4..122 178 34.5 Plus
Dyak\GE17451-PA 350 GE17451-PA 5..77 4..78 171 46.7 Plus
Dyak\GE22992-PA 127 GE22992-PA 5..94 4..93 163 39.1 Plus