Clone LD43650 Report

Search the DGRC for LD43650

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:436
Well:50
Vector:pOT2
Associated Gene/TranscriptMtch-RA
Protein status:LD43650.pep: gold
Preliminary Size:1875
Sequenced Size:1491

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6851 2001-07-04 Blastp of sequenced clone
CG6851 2003-01-01 Sim4 clustering to Release 3
Mtch 2008-04-29 Release 5.5 accounting
Mtch 2008-08-15 Release 5.9 accounting
Mtch 2008-12-18 5.12 accounting

Clone Sequence Records

LD43650.complete Sequence

1491 bp (1491 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051973

> LD43650.complete
TCAGAAGTATATTGTTTTGTAATAAAAAAATATAATTTTGCAACTTGCCA
AAGCCTTGCAACCCTGTAAGAGACGGCCAACGGTCTAATACTTTTTCTGT
CTTTTGCACAGCAGTCCTCCAAATTAAAGGCTACAGAGTTGGGCCCTCGG
TATAAGCAGTCACCAGACCACCCAGTCACTCCACCCACCACGTAACTAGA
ATGGCCGGCTTTCCCGAGCACGCCCGCGCAGAGGATACGGAGGTTAATGT
TTGGATCCGCTTTGGTCTTAGGCTGGGCGTCAGCGCCGCCCTTCATCCGT
TCGAATATTCCAAAACCCTCATCCAGCTGGGTTACGAACCAATCGCTCCT
CTGCCCGGCAAGTCGATACTGGGCAAGCCGATCATGAAGTTGCCGAACAT
CTTTCAGTACGCTGGCCACATTCGGCGGATCGACGGCTTCTACGGTTGCT
ACCGCGGTCTAGCTCCTAAATTGGTGGGTTCTCTGGTGGCCATGGTGGTA
AGCGACCGAGTGGCCGATCAACTGGGCCTGGAGCAGCCAGAGGAGAATAA
GGACGACTCGCAGCTTAGTGATGAGGAATTGTACGTCCAGTTCAAGAAAA
GTCTGAAGCGGGATATTGTTTTGATGGTGAGCGGAGTCGTGGCCTCGCAT
CCTTTTCACGTAATCTCGTTGCGCATGATGGCGCAGTTTGTCGGCCGCGA
GACCTTGTACACCTCTATTGTGGGCTCCGTGGCCGAGATTTGGAAGTCTG
AGGGAATAGCGGGATTTTTCGCCGGTCTTGTGCCAAAGCTGCTGGGCGAT
TTGGCCTGCCTAGTGCTCAGCAGCTCCACGATCTACATCCTTAACAAATA
TATCATCAAGGACAAGTTAGGCAGGCAATACAATTCCGGATTCACACAGT
TTGCCGTATCTAGTTTACTGTATCCACTGCAAGTGGTGTCCACCTGCTCA
GCGGTAAGTGGCTCACGCCTGATGGCTGCCCAACCGCCAATTATGCCGGC
CTACAGGAACTGGGTAGACTGTTGGAATGATTTGCAGGTTCGCGGGGAGC
TTAAGCGCGGCAGCTCCCTTTTCTGGCGGTCACAATCCATCAGTTCTCCA
GTAATAGCCACCTCATTCGCGCCCTTGCCTAAGCTGGCGCGTTACCAGTA
GCCGTCAACAACGAGGCTGGACGACCACGGACGGGCTCCGGTATGACAAG
CTTCAATCCAAGGCAACTGCATTTTTCTACTGTCTCCAAGCCCAGCCATA
ATTCTGTTAATACAAGTTTAGATCTACATTGAAGTGGATTTTCATCGTGG
TCCGTTAGTCTTGCGCGATGTTTTCTTTTCTTTCAGCAACTACGAGCACT
GAAATCGTGAAAAAATCTTTCCCAATCTTGTGCAGACTCCGATATAATTG
TTGTTATTGTTTACTGCAAAATTTTGGAAATAAATCGTTTTGCCCTACTA
AAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAA

LD43650.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
Mtch-RA 1567 Mtch-RA 70..1519 1..1450 7250 100 Plus
Mtch.b 1536 Mtch.b 70..1408 112..1450 6695 100 Plus
Mtch.c 1532 Mtch.c 88..1426 112..1450 6695 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 185322..185821 581..1080 2500 100 Plus
chr3L 24539361 chr3L 184619..185029 1..411 2055 100 Plus
chr3L 24539361 chr3L 185880..186252 1078..1450 1850 99.7 Plus
chr3L 24539361 chr3L 185089..185259 411..581 855 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 185367..185866 581..1080 2500 100 Plus
3L 28110227 3L 184664..185074 1..411 2055 100 Plus
3L 28110227 3L 185925..186297 1078..1450 1865 100 Plus
3L 28110227 3L 185134..185304 411..581 855 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 185367..185866 581..1080 2500 100 Plus
3L 28103327 3L 184664..185074 1..411 2055 100 Plus
3L 28103327 3L 185925..186297 1078..1450 1865 100 Plus
3L 28103327 3L 185134..185304 411..581 855 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:21:27 has no hits.

LD43650.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:22:35 Download gff for LD43650.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 184619..185029 1..411 100 -> Plus
chr3L 185090..185258 412..580 100 -> Plus
chr3L 185322..185819 581..1078 100 -> Plus
chr3L 185881..186251 1079..1449 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:18 Download gff for LD43650.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RC 1..951 201..1151 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:15:56 Download gff for LD43650.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RC 1..951 201..1151 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:39:04 Download gff for LD43650.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RE 1..951 201..1151 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:47:23 Download gff for LD43650.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RC 1..951 201..1151 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:37 Download gff for LD43650.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RE 1..951 201..1151 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:09:55 Download gff for LD43650.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RA 30..1478 1..1449 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:15:56 Download gff for LD43650.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RA 30..1478 1..1449 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:04 Download gff for LD43650.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RA 33..1481 1..1449 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:47:23 Download gff for LD43650.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RA 30..1478 1..1449 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:37 Download gff for LD43650.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RA 39..1487 1..1449 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:22:35 Download gff for LD43650.complete
Subject Subject Range Query Range Percent Splice Strand
3L 185135..185303 412..580 100 -> Plus
3L 184664..185074 1..411 100 -> Plus
3L 185367..185864 581..1078 100 -> Plus
3L 185926..186296 1079..1449 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:22:35 Download gff for LD43650.complete
Subject Subject Range Query Range Percent Splice Strand
3L 185135..185303 412..580 100 -> Plus
3L 184664..185074 1..411 100 -> Plus
3L 185367..185864 581..1078 100 -> Plus
3L 185926..186296 1079..1449 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:22:35 Download gff for LD43650.complete
Subject Subject Range Query Range Percent Splice Strand
3L 185135..185303 412..580 100 -> Plus
3L 184664..185074 1..411 100 -> Plus
3L 185367..185864 581..1078 100 -> Plus
3L 185926..186296 1079..1449 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:04 Download gff for LD43650.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 184664..185074 1..411 100 -> Plus
arm_3L 185135..185303 412..580 100 -> Plus
arm_3L 185367..185864 581..1078 100 -> Plus
arm_3L 185926..186296 1079..1449 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:25:20 Download gff for LD43650.complete
Subject Subject Range Query Range Percent Splice Strand
3L 184664..185074 1..411 100 -> Plus
3L 185135..185303 412..580 100 -> Plus
3L 185367..185864 581..1078 100 -> Plus
3L 185926..186296 1079..1449 100   Plus

LD43650.pep Sequence

Translation from 200 to 1150

> LD43650.pep
MAGFPEHARAEDTEVNVWIRFGLRLGVSAALHPFEYSKTLIQLGYEPIAP
LPGKSILGKPIMKLPNIFQYAGHIRRIDGFYGCYRGLAPKLVGSLVAMVV
SDRVADQLGLEQPEENKDDSQLSDEELYVQFKKSLKRDIVLMVSGVVASH
PFHVISLRMMAQFVGRETLYTSIVGSVAEIWKSEGIAGFFAGLVPKLLGD
LACLVLSSSTIYILNKYIIKDKLGRQYNSGFTQFAVSSLLYPLQVVSTCS
AVSGSRLMAAQPPIMPAYRNWVDCWNDLQVRGELKRGSSLFWRSQSISSP
VIATSFAPLPKLARYQ*

LD43650.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24859-PA 318 GF24859-PA 1..318 1..316 1459 84.3 Plus
Dana\GF21249-PA 452 GF21249-PA 144..431 6..294 565 39.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14697-PA 316 GG14697-PA 1..316 1..316 1585 94.3 Plus
Dere\GG17610-PA 395 GG17610-PA 102..377 16..294 518 39.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15483-PA 316 GH15483-PA 1..316 1..316 1297 73.2 Plus
Dgri\GH13246-PA 315 GH13246-PA 12..315 12..316 1236 73.5 Plus
Dgri\GH12126-PA 381 GH12126-PA 73..357 5..294 635 43 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
Mtch-PG 316 CG6851-PG 1..316 1..316 1623 100 Plus
Mtch-PF 316 CG6851-PF 1..316 1..316 1623 100 Plus
Mtch-PE 316 CG6851-PE 1..316 1..316 1623 100 Plus
Mtch-PC 316 CG6851-PC 1..316 1..316 1623 100 Plus
Mtch-PA 316 CG6851-PA 1..316 1..316 1623 100 Plus
Mtch-PB 316 CG6851-PB 1..316 1..316 1623 100 Plus
CG10920-PA 397 CG10920-PA 99..379 11..294 534 39.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16759-PA 316 GI16759-PA 1..316 1..316 1326 75.4 Plus
Dmoj\GI16212-PA 350 GI16212-PA 65..331 20..294 548 40.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16153-PA 309 GL16153-PA 6..309 8..316 1267 76.1 Plus
Dper\GL14592-PA 344 GL14592-PA 108..330 28..294 273 29.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19905-PA 314 GA19905-PA 6..314 8..316 1306 77 Plus
Dpse\GA24120-PA 389 GA24120-PA 114..375 28..294 357 32.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14313-PA 316 GM14313-PA 1..316 1..316 1643 98.1 Plus
Dsec\GM11973-PA 397 GM11973-PA 90..379 2..294 518 37.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13550-PA 316 GD13550-PA 1..316 1..316 1650 98.4 Plus
Dsim\GD16147-PA 397 GD16147-PA 104..379 16..294 519 39.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12504-PA 316 GJ12504-PA 1..316 1..316 1353 78.2 Plus
Dvir\GJ15674-PA 366 GJ15674-PA 77..347 16..294 592 42.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21061-PA 317 GK21061-PA 1..317 1..316 1357 77.9 Plus
Dwil\GK13597-PA 318 GK13597-PA 12..318 11..316 1215 73 Plus
Dwil\GK18865-PA 311 GK18865-PA 16..291 12..294 541 37.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21060-PA 316 GE21060-PA 1..316 1..316 1602 94.9 Plus
Dyak\GE17510-PA 390 GE17510-PA 91..372 5..294 534 39.7 Plus

LD43650.hyp Sequence

Translation from 200 to 1150

> LD43650.hyp
MAGFPEHARAEDTEVNVWIRFGLRLGVSAALHPFEYSKTLIQLGYEPIAP
LPGKSILGKPIMKLPNIFQYAGHIRRIDGFYGCYRGLAPKLVGSLVAMVV
SDRVADQLGLEQPEENKDDSQLSDEELYVQFKKSLKRDIVLMVSGVVASH
PFHVISLRMMAQFVGRETLYTSIVGSVAEIWKSEGIAGFFAGLVPKLLGD
LACLVLSSSTIYILNKYIIKDKLGRQYNSGFTQFAVSSLLYPLQVVSTCS
AVSGSRLMAAQPPIMPAYRNWVDCWNDLQVRGELKRGSSLFWRSQSISSP
VIATSFAPLPKLARYQ*

LD43650.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
Mtch-PG 316 CG6851-PG 1..316 1..316 1623 100 Plus
Mtch-PF 316 CG6851-PF 1..316 1..316 1623 100 Plus
Mtch-PE 316 CG6851-PE 1..316 1..316 1623 100 Plus
Mtch-PC 316 CG6851-PC 1..316 1..316 1623 100 Plus
Mtch-PA 316 CG6851-PA 1..316 1..316 1623 100 Plus