BDGP Sequence Production Resources |
Search the DGRC for LD43682
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 436 |
Well: | 82 |
Vector: | pOT2 |
Associated Gene/Transcript | lin-RA |
Protein status: | LD43682.pep: gold |
Preliminary Size: | 3695 |
Sequenced Size: | 3604 |
Gene | Date | Evidence |
---|---|---|
CG11770 | 2001-01-01 | Release 2 assignment |
CG11770 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11770 | 2005-03-03 | Blastp of sequenced clone |
lin | 2008-04-29 | Release 5.5 accounting |
lin | 2008-08-15 | Release 5.9 accounting |
lin | 2008-12-18 | 5.12 accounting |
3604 bp (3604 high quality bases) assembled on 2005-03-03
GenBank Submission: BT021378
> LD43682.complete CGCGCACTTAATTTTTGTTTTTTCCCACATAATAAAGTGTAATAAAACCA AAATAAAAGCAGTGCCAGAGAAACAATCGGAGGCGCTTAAAAAGTGAGAA ACAGCACACGACCCAATCGACTGGCCCGGGCACGAAGCGAAACGCGAGTG CAGTGAAACTCACATAAACATTGACATGTCGCTGGCCCGAAGAGTGCAAC AAGTGTGTGAAAATCGAATTGTGGCCGTTTAAAATGTTTGGAGGAGCAGT CAGAGCACCTGGCGGCAGCTAGAGCGCCCTCGTCGCCCCCAAGAAATCAT AGTGTGTCTCAGGAAGCCGAGAGAATCGCCCCACGAAGCCAGGCAGCAGC GTCTGCACACGTAACCTTGTGTGCGCGTAGCACGGAAGCTGTTTGTCGGA ATCGGGTTTGTAGACCATTTGCAGGACGTCGGGTACGTCAGCGCGGAGGA TGGACACCTCATCCGCAGCAGGATCTGGAGCCGGAACGGGCGATGTGTGC CCATGCTCCACGGTAGCAACCTCCACGACCTCCGCATCAAACGAACAGCC GCAGACCAAGCGCCAGAAGATCGAGCAGCAAATCAAGGTGGGCTCCAAGG CGCTGCCACCCCAGCCGCCCCATCCGCCGGATATACTGGACCTGGACGCC AACAGCAACAGCCACCTGTGCTCCTCGCTCTCCTCGTCCTCTTCGCACTC GCTGTCAACGCCAAGCACCGCCAACAACTCCCCCACCACCACGCCCTGTA GTTCCCGGGCGGCGTCGTACGCCCAGCTGCTGCACAACATCTTGCCACAA AACGGGGACACAGACCTGCACAGCCAGCCTGAATCCGCCCATGACGAAGT GGACAGGGCGGCCAAATTGCCCAACCTGCTAACCCTCGACACGACCAACG GCAATGGCAGTCATGCTAGCAGCAGGAGCAATTGCTTGCAAGCAACAACA GCCACGTCCATCGACGATATGCTGGAGTTCGAGCAGTCCCTGACCCGCCA GTGCCTGTGCGGCGTCTCGGAGCGAACGCTGCGCAAGCCCTTCCAGTCGC ATTACTCACAGGACACCAACGGCCAGAAACGGATAGCCTACCTGCGGGAG TGGCCCACCAACAAGCTGCTGCAGTTTCTGTCGAATCTGCAGCTACTGTT CGATATCTACCTGAAGCAGAACGCAAAGGGCTTCATCTGCACGCGGATAA TGGACGTTTGCGACGCACTCATTCGCAATGACCACAAGCTTATCGACGAG ATTATCGTGCTGGCCGGCTACGAGAACTCTTACGTGCAATTTCTGGCGGG ACGTGTGCTAGCCGCATTCCTGGTGATTGCCAAGCAAGAGCTGAATGACG AGTGGCTGCAGAAGATCGTCGACCAGCTATTTAACTTCGAGCAGCTTGAC CAGGCGGCCGTGCAGAAGATCCACTTCAGCCTGGACATCATCAAGCGCAT AGTGGAGTGGAAGGATATGGAGATCCATCCGCTGGACGACGACTGGATGG CGTCGGCGAATAGTACAAGTGCAGCCTCGTCAGTAGTGCCCCTTTCGACA GAGGCGTCCGTGAGCTACATGCATTTTCCCGTGCAGGAGCAGCCGCTAGC CACCAATTATTTTGCACTGCAATTTCGCGAGGATACGGAAGGTGAACGAG AGACGGGGCAGGAAGCACCTGACAACCGCGACCGACATCGGCGGCACTTT GGCGAGGATATGAACGTCGCCTACGAGCCGCACCCCGCTCCCCAGTCCAC GACCATGCCCAGCGGTTGCCATGTGGTCACACTAACCGACTCGGAAAGCT TCGATACGACGCACCTGAAGTGCATCACCATTCAAAAGCTGGAGCACAAG TGGCCCACGCTGGTGAAGAACATGTCGGAGTTGATGGCGCCGACGCATCA GGATGCGGCCGAGCACTGTGTGCTCAACTTCTTGCAGCTATGGGAAAACA TCATCTCGGTGAAGGCCAATCTGTCCATCGACGAGACGCGACCCTACTAC GCCCAGCTGGACAAGTTTGAGCTGCTGCTCAGCCACAGCCTCTCCTGCAC CGTGTACAAGCAGATGCTGTGCCTCTTCAACGAGGCATTGTGCTATGGTT CCACGCTGGCGCTGCAGGACATGCTGCCCGAGGAGACGTGCAAGCTGGCT CACCAGATAGTCTGCCATGTGCGCGGCTTCCGCATACTGGAGTCGTTGCC GCGGCGACAGCCGGACAACATGGTCAGTCTGATCGGCTACAATGGCAAGC CGATGGTGTACGCCAATGGAACAATTACCCTGGCACATGCCGCGCAATCA GGGGACAGCGAAGAGGACGGTGCGCCACTGGACCTTATCGAAATGGATAA GACACTGTTGCAGAAGATGGTGCTGTTGGTGCTGAAGTCGATAGCGGTGA CGGTGAAGGAGATACGCAGCGATTCCTCCGACTCATCCATCGATTCCACC GACTACGATGCCTTCCAGGACATGATGCTCATTGAGCGCTCGATCCGCGA TGTACTCAGCAAGCTGGAGACGTTCATAAAGCAGACGCTGGAATTCCATC CGGAGTGCCACTTCAGCAAGATCCTGATCCACCTGTTCGACGACCAGGAC GACCACTTGATCGAGGCCATGGTCTGCACGCTGGACGTCACGTCTGGGAT ATCGTTCCGCAACAACGCCTTCCCCGAGCTGGTGGCCATGCTGAATCCGG TGTACACATTCCTGGAGTTCCTCAAGATGACATCGAACAGCTCGGACCTG CTGCTGGACCTGCTGGTGAGCAACGAGACCTGCTTCCTGCTCTACCTGCT GCGCCTGCTCAAGTACATCCGCATGAACTGGACGATGTTCGTGCACAGCT GTCACACCTTCGGCATGGGCAGCGCCATGCTAGACGAGGCGATGGGCGTT CTTATCCGGCTGCGCCTGCAGATATCCCGCCTCGTGTCGCGCCAGCTCTA CCCCTACGACATTTCCCCCGTGCTGCGCCTGCTCGAGAGCTGCGAGAGCC TGTACGAGGGCAACGAGCTGAGCTGAATGCGGCGCAGGGACGAACTTCAA CCACATGCAATTAAAATACGTAATTTATTTTAATATTTAATGGAATAGGA GAAACTAGCGCAAAATTCGATGAAGATGGAGGCCTTGTAGAATACGTGTA TTAGCCGTAGGGACCAACCACTCCGACCATAACTCCGCACCCCGATCCAG TAGCGCGTCAACCGTAGTTAAGATCTTGCACCCTCTTCATCCGCTTCGCC CAGCAGGTCTTTCAACCCAGATACATACCCAGCTGTATGTAATTGTCATT GTAATTGTAATGAGCATCACAAGTTCGTAGTTAGTTCGTAGATAATGGTT ATATCATAGGTACTGAATTCCAAACTAAACACTACGCTAGCCTAAGATTT TTTTAATCTTGCCCTAAGTAGAATAATGTACAATAGGATGGCAAAATGCT GCGGCAAACGGCTGCCCGCCGAAGTGGGCGTAAATTCGGTGTCTTCGAGA AGAATATTCTTTGTACGTTTTTTTAAAACACTTGAATAATATAACATAAT TAACTGATTAAAAGAAACGCATTAAGAAGGACTAAAAAAAAAAAAAAAAA AAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
lin-RA | 3675 | lin-RA | 68..3651 | 1..3584 | 17920 | 100 | Plus |
lin.a | 3648 | lin.a | 68..3647 | 1..3584 | 17835 | 99.8 | Plus |
lin.b | 3667 | lin.b | 472..3643 | 413..3584 | 15860 | 100 | Plus |
lin.b | 3667 | lin.b | 68..472 | 1..405 | 2025 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tc3 | 1743 | Tc3 TC3 1743bp | 227..279 | 3508..3561 | 122 | 76.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 4802146..4802558 | 1..413 | 100 | -> | Plus |
chr2R | 4802616..4805785 | 414..3583 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-RA | 1..2577 | 450..3026 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-RA | 1..2577 | 450..3026 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-RA | 1..2577 | 450..3026 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-RA | 1..2577 | 450..3026 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-RA | 1..2577 | 450..3026 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-RA | 68..3650 | 1..3583 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-RA | 68..3650 | 1..3583 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-RA | 72..3654 | 1..3583 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-RA | 68..3650 | 1..3583 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-RA | 72..3654 | 1..3583 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8914595..8915007 | 1..413 | 100 | -> | Plus |
2R | 8915065..8918234 | 414..3583 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8914595..8915007 | 1..413 | 100 | -> | Plus |
2R | 8915065..8918234 | 414..3583 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8914595..8915007 | 1..413 | 100 | -> | Plus |
2R | 8915065..8918234 | 414..3583 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 4802100..4802512 | 1..413 | 100 | -> | Plus |
arm_2R | 4802570..4805739 | 414..3583 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8915794..8916206 | 1..413 | 100 | -> | Plus |
2R | 8916264..8919433 | 414..3583 | 100 | Plus |
Translation from 449 to 3025
> LD43682.pep MDTSSAAGSGAGTGDVCPCSTVATSTTSASNEQPQTKRQKIEQQIKVGSK ALPPQPPHPPDILDLDANSNSHLCSSLSSSSSHSLSTPSTANNSPTTTPC SSRAASYAQLLHNILPQNGDTDLHSQPESAHDEVDRAAKLPNLLTLDTTN GNGSHASSRSNCLQATTATSIDDMLEFEQSLTRQCLCGVSERTLRKPFQS HYSQDTNGQKRIAYLREWPTNKLLQFLSNLQLLFDIYLKQNAKGFICTRI MDVCDALIRNDHKLIDEIIVLAGYENSYVQFLAGRVLAAFLVIAKQELND EWLQKIVDQLFNFEQLDQAAVQKIHFSLDIIKRIVEWKDMEIHPLDDDWM ASANSTSAASSVVPLSTEASVSYMHFPVQEQPLATNYFALQFREDTEGER ETGQEAPDNRDRHRRHFGEDMNVAYEPHPAPQSTTMPSGCHVVTLTDSES FDTTHLKCITIQKLEHKWPTLVKNMSELMAPTHQDAAEHCVLNFLQLWEN IISVKANLSIDETRPYYAQLDKFELLLSHSLSCTVYKQMLCLFNEALCYG STLALQDMLPEETCKLAHQIVCHVRGFRILESLPRRQPDNMVSLIGYNGK PMVYANGTITLAHAAQSGDSEEDGAPLDLIEMDKTLLQKMVLLVLKSIAV TVKEIRSDSSDSSIDSTDYDAFQDMMLIERSIRDVLSKLETFIKQTLEFH PECHFSKILIHLFDDQDDHLIEAMVCTLDVTSGISFRNNAFPELVAMLNP VYTFLEFLKMTSNSSDLLLDLLVSNETCFLLYLLRLLKYIRMNWTMFVHS CHTFGMGSAMLDEAMGVLIRLRLQISRLVSRQLYPYDISPVLRLLESCES LYEGNELS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11922-PA | 875 | GF11922-PA | 17..875 | 12..858 | 3389 | 83.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23396-PA | 855 | GG23396-PA | 1..855 | 1..858 | 4493 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23109-PA | 876 | GH23109-PA | 34..876 | 17..858 | 3053 | 75.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
lin-PA | 858 | CG11770-PA | 1..858 | 1..858 | 4449 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18932-PA | 867 | GI18932-PA | 32..867 | 14..858 | 3071 | 75.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11676-PA | 421 | GL11676-PA | 22..374 | 14..352 | 1292 | 79.2 | Plus |
Dper\GL11677-PA | 176 | GL11677-PA | 1..176 | 683..858 | 927 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11188-PA | 891 | GA11188-PA | 22..891 | 14..858 | 3389 | 83.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21076-PA | 858 | GM21076-PA | 1..858 | 1..858 | 4541 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10612-PA | 675 | GD10612-PA | 1..675 | 163..858 | 3555 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21304-PA | 847 | GJ21304-PA | 27..847 | 17..858 | 3084 | 76.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10632-PA | 844 | GK10632-PA | 20..844 | 29..858 | 2926 | 76.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19237-PA | 854 | GE19237-PA | 1..854 | 1..858 | 4439 | 96.4 | Plus |
Translation from 449 to 3025
> LD43682.hyp MDTSSAAGSGAGTGDVCPCSTVATSTTSASNEQPQTKRQKIEQQIKVGSK ALPPQPPHPPDILDLDANSNSHLCSSLSSSSSHSLSTPSTANNSPTTTPC SSRAASYAQLLHNILPQNGDTDLHSQPESAHDEVDRAAKLPNLLTLDTTN GNGSHASSRSNCLQATTATSIDDMLEFEQSLTRQCLCGVSERTLRKPFQS HYSQDTNGQKRIAYLREWPTNKLLQFLSNLQLLFDIYLKQNAKGFICTRI MDVCDALIRNDHKLIDEIIVLAGYENSYVQFLAGRVLAAFLVIAKQELND EWLQKIVDQLFNFEQLDQAAVQKIHFSLDIIKRIVEWKDMEIHPLDDDWM ASANSTSAASSVVPLSTEASVSYMHFPVQEQPLATNYFALQFREDTEGER ETGQEAPDNRDRHRRHFGEDMNVAYEPHPAPQSTTMPSGCHVVTLTDSES FDTTHLKCITIQKLEHKWPTLVKNMSELMAPTHQDAAEHCVLNFLQLWEN IISVKANLSIDETRPYYAQLDKFELLLSHSLSCTVYKQMLCLFNEALCYG STLALQDMLPEETCKLAHQIVCHVRGFRILESLPRRQPDNMVSLIGYNGK PMVYANGTITLAHAAQSGDSEEDGAPLDLIEMDKTLLQKMVLLVLKSIAV TVKEIRSDSSDSSIDSTDYDAFQDMMLIERSIRDVLSKLETFIKQTLEFH PECHFSKILIHLFDDQDDHLIEAMVCTLDVTSGISFRNNAFPELVAMLNP VYTFLEFLKMTSNSSDLLLDLLVSNETCFLLYLLRLLKYIRMNWTMFVHS CHTFGMGSAMLDEAMGVLIRLRLQISRLVSRQLYPYDISPVLRLLESCES LYEGNELS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
lin-PA | 858 | CG11770-PA | 1..858 | 1..858 | 4449 | 100 | Plus |