Clone LD43682 Report

Search the DGRC for LD43682

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:436
Well:82
Vector:pOT2
Associated Gene/Transcriptlin-RA
Protein status:LD43682.pep: gold
Preliminary Size:3695
Sequenced Size:3604

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11770 2001-01-01 Release 2 assignment
CG11770 2003-01-01 Sim4 clustering to Release 3
CG11770 2005-03-03 Blastp of sequenced clone
lin 2008-04-29 Release 5.5 accounting
lin 2008-08-15 Release 5.9 accounting
lin 2008-12-18 5.12 accounting

Clone Sequence Records

LD43682.complete Sequence

3604 bp (3604 high quality bases) assembled on 2005-03-03

GenBank Submission: BT021378

> LD43682.complete
CGCGCACTTAATTTTTGTTTTTTCCCACATAATAAAGTGTAATAAAACCA
AAATAAAAGCAGTGCCAGAGAAACAATCGGAGGCGCTTAAAAAGTGAGAA
ACAGCACACGACCCAATCGACTGGCCCGGGCACGAAGCGAAACGCGAGTG
CAGTGAAACTCACATAAACATTGACATGTCGCTGGCCCGAAGAGTGCAAC
AAGTGTGTGAAAATCGAATTGTGGCCGTTTAAAATGTTTGGAGGAGCAGT
CAGAGCACCTGGCGGCAGCTAGAGCGCCCTCGTCGCCCCCAAGAAATCAT
AGTGTGTCTCAGGAAGCCGAGAGAATCGCCCCACGAAGCCAGGCAGCAGC
GTCTGCACACGTAACCTTGTGTGCGCGTAGCACGGAAGCTGTTTGTCGGA
ATCGGGTTTGTAGACCATTTGCAGGACGTCGGGTACGTCAGCGCGGAGGA
TGGACACCTCATCCGCAGCAGGATCTGGAGCCGGAACGGGCGATGTGTGC
CCATGCTCCACGGTAGCAACCTCCACGACCTCCGCATCAAACGAACAGCC
GCAGACCAAGCGCCAGAAGATCGAGCAGCAAATCAAGGTGGGCTCCAAGG
CGCTGCCACCCCAGCCGCCCCATCCGCCGGATATACTGGACCTGGACGCC
AACAGCAACAGCCACCTGTGCTCCTCGCTCTCCTCGTCCTCTTCGCACTC
GCTGTCAACGCCAAGCACCGCCAACAACTCCCCCACCACCACGCCCTGTA
GTTCCCGGGCGGCGTCGTACGCCCAGCTGCTGCACAACATCTTGCCACAA
AACGGGGACACAGACCTGCACAGCCAGCCTGAATCCGCCCATGACGAAGT
GGACAGGGCGGCCAAATTGCCCAACCTGCTAACCCTCGACACGACCAACG
GCAATGGCAGTCATGCTAGCAGCAGGAGCAATTGCTTGCAAGCAACAACA
GCCACGTCCATCGACGATATGCTGGAGTTCGAGCAGTCCCTGACCCGCCA
GTGCCTGTGCGGCGTCTCGGAGCGAACGCTGCGCAAGCCCTTCCAGTCGC
ATTACTCACAGGACACCAACGGCCAGAAACGGATAGCCTACCTGCGGGAG
TGGCCCACCAACAAGCTGCTGCAGTTTCTGTCGAATCTGCAGCTACTGTT
CGATATCTACCTGAAGCAGAACGCAAAGGGCTTCATCTGCACGCGGATAA
TGGACGTTTGCGACGCACTCATTCGCAATGACCACAAGCTTATCGACGAG
ATTATCGTGCTGGCCGGCTACGAGAACTCTTACGTGCAATTTCTGGCGGG
ACGTGTGCTAGCCGCATTCCTGGTGATTGCCAAGCAAGAGCTGAATGACG
AGTGGCTGCAGAAGATCGTCGACCAGCTATTTAACTTCGAGCAGCTTGAC
CAGGCGGCCGTGCAGAAGATCCACTTCAGCCTGGACATCATCAAGCGCAT
AGTGGAGTGGAAGGATATGGAGATCCATCCGCTGGACGACGACTGGATGG
CGTCGGCGAATAGTACAAGTGCAGCCTCGTCAGTAGTGCCCCTTTCGACA
GAGGCGTCCGTGAGCTACATGCATTTTCCCGTGCAGGAGCAGCCGCTAGC
CACCAATTATTTTGCACTGCAATTTCGCGAGGATACGGAAGGTGAACGAG
AGACGGGGCAGGAAGCACCTGACAACCGCGACCGACATCGGCGGCACTTT
GGCGAGGATATGAACGTCGCCTACGAGCCGCACCCCGCTCCCCAGTCCAC
GACCATGCCCAGCGGTTGCCATGTGGTCACACTAACCGACTCGGAAAGCT
TCGATACGACGCACCTGAAGTGCATCACCATTCAAAAGCTGGAGCACAAG
TGGCCCACGCTGGTGAAGAACATGTCGGAGTTGATGGCGCCGACGCATCA
GGATGCGGCCGAGCACTGTGTGCTCAACTTCTTGCAGCTATGGGAAAACA
TCATCTCGGTGAAGGCCAATCTGTCCATCGACGAGACGCGACCCTACTAC
GCCCAGCTGGACAAGTTTGAGCTGCTGCTCAGCCACAGCCTCTCCTGCAC
CGTGTACAAGCAGATGCTGTGCCTCTTCAACGAGGCATTGTGCTATGGTT
CCACGCTGGCGCTGCAGGACATGCTGCCCGAGGAGACGTGCAAGCTGGCT
CACCAGATAGTCTGCCATGTGCGCGGCTTCCGCATACTGGAGTCGTTGCC
GCGGCGACAGCCGGACAACATGGTCAGTCTGATCGGCTACAATGGCAAGC
CGATGGTGTACGCCAATGGAACAATTACCCTGGCACATGCCGCGCAATCA
GGGGACAGCGAAGAGGACGGTGCGCCACTGGACCTTATCGAAATGGATAA
GACACTGTTGCAGAAGATGGTGCTGTTGGTGCTGAAGTCGATAGCGGTGA
CGGTGAAGGAGATACGCAGCGATTCCTCCGACTCATCCATCGATTCCACC
GACTACGATGCCTTCCAGGACATGATGCTCATTGAGCGCTCGATCCGCGA
TGTACTCAGCAAGCTGGAGACGTTCATAAAGCAGACGCTGGAATTCCATC
CGGAGTGCCACTTCAGCAAGATCCTGATCCACCTGTTCGACGACCAGGAC
GACCACTTGATCGAGGCCATGGTCTGCACGCTGGACGTCACGTCTGGGAT
ATCGTTCCGCAACAACGCCTTCCCCGAGCTGGTGGCCATGCTGAATCCGG
TGTACACATTCCTGGAGTTCCTCAAGATGACATCGAACAGCTCGGACCTG
CTGCTGGACCTGCTGGTGAGCAACGAGACCTGCTTCCTGCTCTACCTGCT
GCGCCTGCTCAAGTACATCCGCATGAACTGGACGATGTTCGTGCACAGCT
GTCACACCTTCGGCATGGGCAGCGCCATGCTAGACGAGGCGATGGGCGTT
CTTATCCGGCTGCGCCTGCAGATATCCCGCCTCGTGTCGCGCCAGCTCTA
CCCCTACGACATTTCCCCCGTGCTGCGCCTGCTCGAGAGCTGCGAGAGCC
TGTACGAGGGCAACGAGCTGAGCTGAATGCGGCGCAGGGACGAACTTCAA
CCACATGCAATTAAAATACGTAATTTATTTTAATATTTAATGGAATAGGA
GAAACTAGCGCAAAATTCGATGAAGATGGAGGCCTTGTAGAATACGTGTA
TTAGCCGTAGGGACCAACCACTCCGACCATAACTCCGCACCCCGATCCAG
TAGCGCGTCAACCGTAGTTAAGATCTTGCACCCTCTTCATCCGCTTCGCC
CAGCAGGTCTTTCAACCCAGATACATACCCAGCTGTATGTAATTGTCATT
GTAATTGTAATGAGCATCACAAGTTCGTAGTTAGTTCGTAGATAATGGTT
ATATCATAGGTACTGAATTCCAAACTAAACACTACGCTAGCCTAAGATTT
TTTTAATCTTGCCCTAAGTAGAATAATGTACAATAGGATGGCAAAATGCT
GCGGCAAACGGCTGCCCGCCGAAGTGGGCGTAAATTCGGTGTCTTCGAGA
AGAATATTCTTTGTACGTTTTTTTAAAACACTTGAATAATATAACATAAT
TAACTGATTAAAAGAAACGCATTAAGAAGGACTAAAAAAAAAAAAAAAAA
AAAA

LD43682.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
lin-RA 3675 lin-RA 68..3651 1..3584 17920 100 Plus
lin.a 3648 lin.a 68..3647 1..3584 17835 99.8 Plus
lin.b 3667 lin.b 472..3643 413..3584 15860 100 Plus
lin.b 3667 lin.b 68..472 1..405 2025 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4802610..4805785 408..3583 15850 99.9 Plus
chr2R 21145070 chr2R 4802146..4802558 1..413 2065 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8915059..8918235 408..3584 15870 100 Plus
2R 25286936 2R 8914595..8915007 1..413 2065 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8916258..8919434 408..3584 15870 99.9 Plus
2R 25260384 2R 8915794..8916206 1..413 2065 100 Plus
Blast to na_te.dros performed 2019-03-16 16:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
Tc3 1743 Tc3 TC3 1743bp 227..279 3508..3561 122 76.4 Plus

LD43682.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:43:34 Download gff for LD43682.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4802146..4802558 1..413 100 -> Plus
chr2R 4802616..4805785 414..3583 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:22 Download gff for LD43682.complete
Subject Subject Range Query Range Percent Splice Strand
lin-RA 1..2577 450..3026 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:26:21 Download gff for LD43682.complete
Subject Subject Range Query Range Percent Splice Strand
lin-RA 1..2577 450..3026 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:23:03 Download gff for LD43682.complete
Subject Subject Range Query Range Percent Splice Strand
lin-RA 1..2577 450..3026 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:10:26 Download gff for LD43682.complete
Subject Subject Range Query Range Percent Splice Strand
lin-RA 1..2577 450..3026 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:38:32 Download gff for LD43682.complete
Subject Subject Range Query Range Percent Splice Strand
lin-RA 1..2577 450..3026 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:29:12 Download gff for LD43682.complete
Subject Subject Range Query Range Percent Splice Strand
lin-RA 68..3650 1..3583 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:26:21 Download gff for LD43682.complete
Subject Subject Range Query Range Percent Splice Strand
lin-RA 68..3650 1..3583 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:03 Download gff for LD43682.complete
Subject Subject Range Query Range Percent Splice Strand
lin-RA 72..3654 1..3583 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:10:26 Download gff for LD43682.complete
Subject Subject Range Query Range Percent Splice Strand
lin-RA 68..3650 1..3583 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:38:32 Download gff for LD43682.complete
Subject Subject Range Query Range Percent Splice Strand
lin-RA 72..3654 1..3583 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:34 Download gff for LD43682.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8914595..8915007 1..413 100 -> Plus
2R 8915065..8918234 414..3583 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:34 Download gff for LD43682.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8914595..8915007 1..413 100 -> Plus
2R 8915065..8918234 414..3583 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:34 Download gff for LD43682.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8914595..8915007 1..413 100 -> Plus
2R 8915065..8918234 414..3583 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:03 Download gff for LD43682.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4802100..4802512 1..413 100 -> Plus
arm_2R 4802570..4805739 414..3583 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:46:54 Download gff for LD43682.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8915794..8916206 1..413 100 -> Plus
2R 8916264..8919433 414..3583 100   Plus

LD43682.pep Sequence

Translation from 449 to 3025

> LD43682.pep
MDTSSAAGSGAGTGDVCPCSTVATSTTSASNEQPQTKRQKIEQQIKVGSK
ALPPQPPHPPDILDLDANSNSHLCSSLSSSSSHSLSTPSTANNSPTTTPC
SSRAASYAQLLHNILPQNGDTDLHSQPESAHDEVDRAAKLPNLLTLDTTN
GNGSHASSRSNCLQATTATSIDDMLEFEQSLTRQCLCGVSERTLRKPFQS
HYSQDTNGQKRIAYLREWPTNKLLQFLSNLQLLFDIYLKQNAKGFICTRI
MDVCDALIRNDHKLIDEIIVLAGYENSYVQFLAGRVLAAFLVIAKQELND
EWLQKIVDQLFNFEQLDQAAVQKIHFSLDIIKRIVEWKDMEIHPLDDDWM
ASANSTSAASSVVPLSTEASVSYMHFPVQEQPLATNYFALQFREDTEGER
ETGQEAPDNRDRHRRHFGEDMNVAYEPHPAPQSTTMPSGCHVVTLTDSES
FDTTHLKCITIQKLEHKWPTLVKNMSELMAPTHQDAAEHCVLNFLQLWEN
IISVKANLSIDETRPYYAQLDKFELLLSHSLSCTVYKQMLCLFNEALCYG
STLALQDMLPEETCKLAHQIVCHVRGFRILESLPRRQPDNMVSLIGYNGK
PMVYANGTITLAHAAQSGDSEEDGAPLDLIEMDKTLLQKMVLLVLKSIAV
TVKEIRSDSSDSSIDSTDYDAFQDMMLIERSIRDVLSKLETFIKQTLEFH
PECHFSKILIHLFDDQDDHLIEAMVCTLDVTSGISFRNNAFPELVAMLNP
VYTFLEFLKMTSNSSDLLLDLLVSNETCFLLYLLRLLKYIRMNWTMFVHS
CHTFGMGSAMLDEAMGVLIRLRLQISRLVSRQLYPYDISPVLRLLESCES
LYEGNELS*

LD43682.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11922-PA 875 GF11922-PA 17..875 12..858 3389 83.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23396-PA 855 GG23396-PA 1..855 1..858 4493 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23109-PA 876 GH23109-PA 34..876 17..858 3053 75.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
lin-PA 858 CG11770-PA 1..858 1..858 4449 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18932-PA 867 GI18932-PA 32..867 14..858 3071 75.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11676-PA 421 GL11676-PA 22..374 14..352 1292 79.2 Plus
Dper\GL11677-PA 176 GL11677-PA 1..176 683..858 927 98.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11188-PA 891 GA11188-PA 22..891 14..858 3389 83.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21076-PA 858 GM21076-PA 1..858 1..858 4541 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10612-PA 675 GD10612-PA 1..675 163..858 3555 95.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21304-PA 847 GJ21304-PA 27..847 17..858 3084 76.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10632-PA 844 GK10632-PA 20..844 29..858 2926 76.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19237-PA 854 GE19237-PA 1..854 1..858 4439 96.4 Plus

LD43682.hyp Sequence

Translation from 449 to 3025

> LD43682.hyp
MDTSSAAGSGAGTGDVCPCSTVATSTTSASNEQPQTKRQKIEQQIKVGSK
ALPPQPPHPPDILDLDANSNSHLCSSLSSSSSHSLSTPSTANNSPTTTPC
SSRAASYAQLLHNILPQNGDTDLHSQPESAHDEVDRAAKLPNLLTLDTTN
GNGSHASSRSNCLQATTATSIDDMLEFEQSLTRQCLCGVSERTLRKPFQS
HYSQDTNGQKRIAYLREWPTNKLLQFLSNLQLLFDIYLKQNAKGFICTRI
MDVCDALIRNDHKLIDEIIVLAGYENSYVQFLAGRVLAAFLVIAKQELND
EWLQKIVDQLFNFEQLDQAAVQKIHFSLDIIKRIVEWKDMEIHPLDDDWM
ASANSTSAASSVVPLSTEASVSYMHFPVQEQPLATNYFALQFREDTEGER
ETGQEAPDNRDRHRRHFGEDMNVAYEPHPAPQSTTMPSGCHVVTLTDSES
FDTTHLKCITIQKLEHKWPTLVKNMSELMAPTHQDAAEHCVLNFLQLWEN
IISVKANLSIDETRPYYAQLDKFELLLSHSLSCTVYKQMLCLFNEALCYG
STLALQDMLPEETCKLAHQIVCHVRGFRILESLPRRQPDNMVSLIGYNGK
PMVYANGTITLAHAAQSGDSEEDGAPLDLIEMDKTLLQKMVLLVLKSIAV
TVKEIRSDSSDSSIDSTDYDAFQDMMLIERSIRDVLSKLETFIKQTLEFH
PECHFSKILIHLFDDQDDHLIEAMVCTLDVTSGISFRNNAFPELVAMLNP
VYTFLEFLKMTSNSSDLLLDLLVSNETCFLLYLLRLLKYIRMNWTMFVHS
CHTFGMGSAMLDEAMGVLIRLRLQISRLVSRQLYPYDISPVLRLLESCES
LYEGNELS*

LD43682.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
lin-PA 858 CG11770-PA 1..858 1..858 4449 100 Plus