Clone LD43716 Report

Search the DGRC for LD43716

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:437
Well:16
Vector:pOT2
Associated Gene/Transcriptoxt-RB
Protein status:LD43716.pep: gold
Preliminary Size:3523
Sequenced Size:3365

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17771 2001-01-01 Release 2 assignment
CG17772 2001-01-01 Release 2 assignment
CG32300 2001-11-12 Blastp of sequenced clone
CG32300 2003-01-01 Sim4 clustering to Release 3
oxt 2008-04-29 Release 5.5 accounting
oxt 2008-08-15 Release 5.9 accounting
oxt 2008-12-18 5.12 accounting

Clone Sequence Records

LD43716.complete Sequence

3365 bp (3365 high quality bases) assembled on 2001-11-12

GenBank Submission: AY069660

> LD43716.complete
CACTGCTCGAGCGGGGAGACTTTTCCGTGGAAAAATGTTATTAATTAGCC
AGACGAACCAGTCCAAATGCTTTGCCCGCCAGCACTAGAGAGCAAAACAT
GTCCCCGCCTCGTCTCCACAGCTCATCACGGATCACAGCCCACACGCACG
TCCAGATTCCAGAGGAGCAGCATCTCGTCTTTGGCAGCGGAGGTTGGAGC
AAAAGCCCCTGGAGATACAACTAGCCATGGAGCAGTCTGTGTCCGCCCGC
TGGCTGAAGCGCTATCGCGCATTCTTCCTCATCCTGCTGCTTATCGTGGC
CATCCAGTTGTTCCTGGCCTACAAGTCCCTGGACATCGTAGGCGGCGGTT
CCGGTTCCGGATTTGATGCGGCTGAAGCGCCTGCCAGTCCTCCGCCTCCG
CATGCTCAGGCACGGGTCCAACCGCCCGCCAGGACCAAGCTTACTGCCCA
GCAACTGGGCTTCCAGCCAGAGTGCGACATTCTCGCCAGAGAGGCCATCT
CCGCCCTGCAGCGCGCCAAAACGAAAGACTGTCGAGAACATATCGCGCAG
ATCGCCTGCGCAATCCAAGCCGGACGCTTCTATGCGCCGCAGCTCCGGAG
CAGCTGTCCAGCTGGTAATCACACGGCGAACGTTTCTTTGGGATGCTTCA
AGGATGAGAAAGATCGCCGCCTTCTGGCCGGCTACTACAGCAGCTCCAAG
ACCTCCAATTCTCCGGCCAAATGCGTGGAGCTATGTCTGCAAAGCGGTTA
CCCGTACGCAGGGGTGCAGTACGGTCGCGAGTGCTTCTGCGGTTACGACC
CGCCTCCTAAAGCGTCGAAGCTGCCGGACTCCAGTTGCAACACCAAGTGC
CTGGGCAACGCCAAGGAAATCTGCGGCGGATTCTATGCCATGAACATATA
CGAGACCGGAATAGCCAAGTTCACCGCTCAACTGGCGGCCACCACTCCTT
CGGAGGAAACGAAGCGCGTGCGGATCGCATTTCTGCTGACGCTCAACGGA
AGAGCGCTGCGTCAGGTGCACCGACTTCTGAAGGCGCTCTATGCACCGGA
GCACGTTTACTACATCCATGTGGACGAGCGCCAAGATTACCTGTACCGAA
AGCTGCTGGAGTTGGAGTCAAAGTTCCCCAACATACGTTTGGCTCGGAAG
CGATTCTCCACCATATGGGGTGGAGCCTCTCTCCTGACCATGCTGCTCCA
GTGCATGGAGGACCTACTGCAGTCCAACTGGCACTGGGACTTTGTGATCA
ACCTTAGCGAAAGTGATTTTCCAGTGAAGACCCTCGACAAGTTGGTGGAT
TTCTTGAGCGCCAATCCTGGCAGGAACTTTGTTAAGGGCCACGGCCGGGA
GACACAGAAGTTCATCCAGAAGCAGGGCTTGGACAAGACGTTCGTCGAGT
GCGACACGCACATGTGGAGAATAGGAGATCGGAAGTTGCCAGCTGGCATT
CAAGTGGACGGAGGCAGTGACTGGGTGGCGCTATCACGACCTTTTGTGGG
CTATGTTACTCATCCCAGGGAAGACGATGAGTTGTTGCAGGCTCTTCTAA
AGCTCTTCCGACACACGCTCCTGCCGGCGGAATCGTTTTTCCACACGGTC
CTCAGGAATACCAAGCATTGCACGAGCTATGTGGACAACAACCTGCACGT
CACCAACTGGAAGCGGAAGCAGGGTTGCAAATGCCAGTACAAGCATGTGG
TGGATTGGTGCGGATGCAGTCCAAACGACTTTAAGCCAGAAGATTGGCCC
AGGCTGCAGGCCACGGAGCAGAAATCACTGTTCTTCGCCCGCAAGTTTGA
GCCCGTTATCAACCAGGCGGTGCTGCTCCAGCTGGAGGAGTGGCTCTACG
GGCCATACACCAGCGAATACGCCAATCTGCACGGCTACTGGCAGTCGCTG
TATCACCACGAGGATGTCCATGGATCAGGAGACGACTTGGCCAGAAGCAT
TGGAGATAGCGTAATGCGTCTGTCTGCGCGTCAAGCGAAATTGTATCCCC
TGGAGTTGATTGAACTCACTCACTACCTCCACCGGGACCAGTACAAGGGG
TTCCTGGTGCGCTACAGAGCCAGAGGATCTACTGGAAAGCCGCTGCACTT
GGAGACGAGAGTGCGACCGACGCAGCAAGGAAAGCTGGCGAGGAATGCTC
GCTTCAGCAAGCGATTACGCAACTTTGAGGTCTCTACAGATTTCGATCAA
AAGGAGCAGATTGCCCGCAACTTTGGAAAGCTCTTGGGTCCCCAAAGTGA
CTTGCTTTTGAGCTACACACTCCAAGCAAACGCAGATTCGGGCGCCGCTT
CCCATTCGTACAACCTCACCCTGCTGTGGATAGATCCGCTGGGCCGATTG
CAAGATTTTAATGAATTGCATGTTGAGGATTCCACCAGCGATGTGATAAA
CCACTCGAAAACCCTGCTCAAACACCCGATCACACCGGGCATCTGGACAG
CCAAGTTAATAGGCCGCAATTCGATCTATGCGCAGTTGAAATTCCTAATA
GCTCCACTGGCCTACTACAAGGGCTATCCGCTAGCAAAGTCCTCAGATGC
TGAGGCGCTAAACGCCGGCTTGACTGTAGCTCTGCCTGAAGATTTTGAGA
TGCCCGTGGAGTGGCAGCAGCACCTTCAAACCGACGACGAGCAGTTCACC
ATGCGCGAGGAGTCCCTGGCCAAAGGGAAAATGCTGGGACAGGAGCTGCA
CAGCTGGATTGACGGATTGGTGGGCCAATTCTTTCAACTGCGTGAGAGCT
GCGTGGTGGAGGCGGACAGCGAGGTTTCCCTGCCGCTGTGCAGCGATGCG
CCCTGGAGCTCACTGGCACCCGACCCCAAGAGCGATGTGGATGCCCTGCT
CAAATGAGCCATTGCCATGCATTAATTTGTTATTAATTCTCTAGTGTAAA
TACTCGCCAAGATTTAGATGTCGAACCGCAATTAACGATTTTTTGATAGC
TCCTTTTTCTTCTCGATGTTTTCGTATAGATTGTTGTGATAATGTGAACT
TTTAAGCGCCATTTTGACCGGAAGCGGAACTCCGCCGCTCCAATTGTATT
TGATTTTCATATCAATAGAGCATAGTAGCACTTTGGAACTAGTTAAGTTA
GTTAGGTTGAACGCCTTGTAAATACGCCACGCACTGGACACCAAAAGATC
GCATTGCAGCCAAATATCGTGGAGGTAATCGAGAGTTAACTGTACATAAG
GTTAGCTAGATGAAATTCCTTAACTAAGTCATAAGCTAGGGCACCACCAG
ATAGCAATTGAATCAGTTGTATGTATTCACAAGTTTCTTCGATTTTTTGA
TTCACATATCAAGTTATCCAAAATAAATGAGCAATTCTACGTGTACTAAA
AAAAAAAAAAAAAAA

LD43716.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
oxt-RB 3582 oxt-RB 192..3540 1..3349 16745 100 Plus
CG2034-RA 1175 CG2034-RA 1078..1175 3349..3252 490 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2258241..2260511 3347..1077 11340 100 Minus
chr3L 24539361 chr3L 2261117..2262033 917..1 4555 99.8 Minus
chr3L 24539361 chr3L 2260855..2261015 1078..918 775 98.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2258837..2261109 3349..1077 11365 100 Minus
3L 28110227 3L 2261715..2262631 917..1 4585 100 Minus
3L 28110227 3L 2261453..2261613 1078..918 805 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2258837..2261109 3349..1077 11365 100 Minus
3L 28103327 3L 2261715..2262631 917..1 4585 100 Minus
3L 28103327 3L 2261453..2261613 1078..918 805 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:24:57 has no hits.

LD43716.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:25:40 Download gff for LD43716.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2258241..2260509 1079..3347 99 <- Minus
chr3L 2260855..2261015 918..1078 98 <- Minus
chr3L 2261117..2262033 1..917 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:28 Download gff for LD43716.complete
Subject Subject Range Query Range Percent Splice Strand
oxt-RB 1..2631 227..2857 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:27:58 Download gff for LD43716.complete
Subject Subject Range Query Range Percent Splice Strand
oxt-RB 1..2631 227..2857 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:38:47 Download gff for LD43716.complete
Subject Subject Range Query Range Percent Splice Strand
oxt-RB 1..2631 227..2857 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:55:35 Download gff for LD43716.complete
Subject Subject Range Query Range Percent Splice Strand
oxt-RB 1..2631 227..2857 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:09:44 Download gff for LD43716.complete
Subject Subject Range Query Range Percent Splice Strand
oxt-RB 1..2631 227..2857 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:04:57 Download gff for LD43716.complete
Subject Subject Range Query Range Percent Splice Strand
oxt-RB 31..3377 1..3347 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:27:58 Download gff for LD43716.complete
Subject Subject Range Query Range Percent Splice Strand
oxt-RB 31..3377 1..3347 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:38:47 Download gff for LD43716.complete
Subject Subject Range Query Range Percent Splice Strand
oxt-RB 34..3380 1..3347 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:55:35 Download gff for LD43716.complete
Subject Subject Range Query Range Percent Splice Strand
oxt-RB 31..3377 1..3347 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:09:44 Download gff for LD43716.complete
Subject Subject Range Query Range Percent Splice Strand
oxt-RB 34..3380 1..3347 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:25:40 Download gff for LD43716.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2258839..2261107 1079..3347 100 <- Minus
3L 2261453..2261613 918..1078 100 <- Minus
3L 2261715..2262631 1..917 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:25:40 Download gff for LD43716.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2258839..2261107 1079..3347 100 <- Minus
3L 2261453..2261613 918..1078 100 <- Minus
3L 2261715..2262631 1..917 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:25:40 Download gff for LD43716.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2258839..2261107 1079..3347 100 <- Minus
3L 2261453..2261613 918..1078 100 <- Minus
3L 2261715..2262631 1..917 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:38:47 Download gff for LD43716.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2258839..2261107 1079..3347 100 <- Minus
arm_3L 2261453..2261613 918..1078 100 <- Minus
arm_3L 2261715..2262631 1..917 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:31:38 Download gff for LD43716.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2258839..2261107 1079..3347 100 <- Minus
3L 2261453..2261613 918..1078 100 <- Minus
3L 2261715..2262631 1..917 100   Minus

LD43716.pep Sequence

Translation from 226 to 2856

> LD43716.pep
MEQSVSARWLKRYRAFFLILLLIVAIQLFLAYKSLDIVGGGSGSGFDAAE
APASPPPPHAQARVQPPARTKLTAQQLGFQPECDILAREAISALQRAKTK
DCREHIAQIACAIQAGRFYAPQLRSSCPAGNHTANVSLGCFKDEKDRRLL
AGYYSSSKTSNSPAKCVELCLQSGYPYAGVQYGRECFCGYDPPPKASKLP
DSSCNTKCLGNAKEICGGFYAMNIYETGIAKFTAQLAATTPSEETKRVRI
AFLLTLNGRALRQVHRLLKALYAPEHVYYIHVDERQDYLYRKLLELESKF
PNIRLARKRFSTIWGGASLLTMLLQCMEDLLQSNWHWDFVINLSESDFPV
KTLDKLVDFLSANPGRNFVKGHGRETQKFIQKQGLDKTFVECDTHMWRIG
DRKLPAGIQVDGGSDWVALSRPFVGYVTHPREDDELLQALLKLFRHTLLP
AESFFHTVLRNTKHCTSYVDNNLHVTNWKRKQGCKCQYKHVVDWCGCSPN
DFKPEDWPRLQATEQKSLFFARKFEPVINQAVLLQLEEWLYGPYTSEYAN
LHGYWQSLYHHEDVHGSGDDLARSIGDSVMRLSARQAKLYPLELIELTHY
LHRDQYKGFLVRYRARGSTGKPLHLETRVRPTQQGKLARNARFSKRLRNF
EVSTDFDQKEQIARNFGKLLGPQSDLLLSYTLQANADSGAASHSYNLTLL
WIDPLGRLQDFNELHVEDSTSDVINHSKTLLKHPITPGIWTAKLIGRNSI
YAQLKFLIAPLAYYKGYPLAKSSDAEALNAGLTVALPEDFEMPVEWQQHL
QTDDEQFTMREESLAKGKMLGQELHSWIDGLVGQFFQLRESCVVEADSEV
SLPLCSDAPWSSLAPDPKSDVDALLK*

LD43716.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\oxt-PA 879 GF24873-PA 1..879 1..876 4165 87.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\oxt-PA 876 GG14524-PA 1..876 1..876 4602 96.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16481-PA 884 GH16481-PA 6..883 4..876 3742 78.2 Plus
Dgri\GH10790-PA 621 GH10790-PA 1..620 259..876 2750 81.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
oxt-PB 876 CG32300-PB 1..876 1..876 4654 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12152-PA 880 GI12152-PA 1..880 1..871 3592 75.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\oxt-PA 830 GL24622-PA 1..830 1..876 3612 77.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\oxt-PA 880 GA16815-PA 1..880 1..876 4005 83.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\oxt-PA 876 GM14129-PA 1..876 1..876 4640 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\oxt-PA 876 GD13401-PA 1..876 1..876 4657 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\oxt-PA 885 GJ13432-PA 1..884 1..876 3728 78.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\oxt-PA 886 GK12594-PA 10..886 4..876 3842 82.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\oxt-PA 876 GE21716-PA 1..876 1..876 4575 96.3 Plus

LD43716.hyp Sequence

Translation from 226 to 2856

> LD43716.hyp
MEQSVSARWLKRYRAFFLILLLIVAIQLFLAYKSLDIVGGGSGSGFDAAE
APASPPPPHAQARVQPPARTKLTAQQLGFQPECDILAREAISALQRAKTK
DCREHIAQIACAIQAGRFYAPQLRSSCPAGNHTANVSLGCFKDEKDRRLL
AGYYSSSKTSNSPAKCVELCLQSGYPYAGVQYGRECFCGYDPPPKASKLP
DSSCNTKCLGNAKEICGGFYAMNIYETGIAKFTAQLAATTPSEETKRVRI
AFLLTLNGRALRQVHRLLKALYAPEHVYYIHVDERQDYLYRKLLELESKF
PNIRLARKRFSTIWGGASLLTMLLQCMEDLLQSNWHWDFVINLSESDFPV
KTLDKLVDFLSANPGRNFVKGHGRETQKFIQKQGLDKTFVECDTHMWRIG
DRKLPAGIQVDGGSDWVALSRPFVGYVTHPREDDELLQALLKLFRHTLLP
AESFFHTVLRNTKHCTSYVDNNLHVTNWKRKQGCKCQYKHVVDWCGCSPN
DFKPEDWPRLQATEQKSLFFARKFEPVINQAVLLQLEEWLYGPYTSEYAN
LHGYWQSLYHHEDVHGSGDDLARSIGDSVMRLSARQAKLYPLELIELTHY
LHRDQYKGFLVRYRARGSTGKPLHLETRVRPTQQGKLARNARFSKRLRNF
EVSTDFDQKEQIARNFGKLLGPQSDLLLSYTLQANADSGAASHSYNLTLL
WIDPLGRLQDFNELHVEDSTSDVINHSKTLLKHPITPGIWTAKLIGRNSI
YAQLKFLIAPLAYYKGYPLAKSSDAEALNAGLTVALPEDFEMPVEWQQHL
QTDDEQFTMREESLAKGKMLGQELHSWIDGLVGQFFQLRESCVVEADSEV
SLPLCSDAPWSSLAPDPKSDVDALLK*

LD43716.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
oxt-PB 876 CG32300-PB 1..876 1..876 4654 100 Plus