BDGP Sequence Production Resources |
Search the DGRC for LD43716
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 437 |
Well: | 16 |
Vector: | pOT2 |
Associated Gene/Transcript | oxt-RB |
Protein status: | LD43716.pep: gold |
Preliminary Size: | 3523 |
Sequenced Size: | 3365 |
Gene | Date | Evidence |
---|---|---|
CG17771 | 2001-01-01 | Release 2 assignment |
CG17772 | 2001-01-01 | Release 2 assignment |
CG32300 | 2001-11-12 | Blastp of sequenced clone |
CG32300 | 2003-01-01 | Sim4 clustering to Release 3 |
oxt | 2008-04-29 | Release 5.5 accounting |
oxt | 2008-08-15 | Release 5.9 accounting |
oxt | 2008-12-18 | 5.12 accounting |
3365 bp (3365 high quality bases) assembled on 2001-11-12
GenBank Submission: AY069660
> LD43716.complete CACTGCTCGAGCGGGGAGACTTTTCCGTGGAAAAATGTTATTAATTAGCC AGACGAACCAGTCCAAATGCTTTGCCCGCCAGCACTAGAGAGCAAAACAT GTCCCCGCCTCGTCTCCACAGCTCATCACGGATCACAGCCCACACGCACG TCCAGATTCCAGAGGAGCAGCATCTCGTCTTTGGCAGCGGAGGTTGGAGC AAAAGCCCCTGGAGATACAACTAGCCATGGAGCAGTCTGTGTCCGCCCGC TGGCTGAAGCGCTATCGCGCATTCTTCCTCATCCTGCTGCTTATCGTGGC CATCCAGTTGTTCCTGGCCTACAAGTCCCTGGACATCGTAGGCGGCGGTT CCGGTTCCGGATTTGATGCGGCTGAAGCGCCTGCCAGTCCTCCGCCTCCG CATGCTCAGGCACGGGTCCAACCGCCCGCCAGGACCAAGCTTACTGCCCA GCAACTGGGCTTCCAGCCAGAGTGCGACATTCTCGCCAGAGAGGCCATCT CCGCCCTGCAGCGCGCCAAAACGAAAGACTGTCGAGAACATATCGCGCAG ATCGCCTGCGCAATCCAAGCCGGACGCTTCTATGCGCCGCAGCTCCGGAG CAGCTGTCCAGCTGGTAATCACACGGCGAACGTTTCTTTGGGATGCTTCA AGGATGAGAAAGATCGCCGCCTTCTGGCCGGCTACTACAGCAGCTCCAAG ACCTCCAATTCTCCGGCCAAATGCGTGGAGCTATGTCTGCAAAGCGGTTA CCCGTACGCAGGGGTGCAGTACGGTCGCGAGTGCTTCTGCGGTTACGACC CGCCTCCTAAAGCGTCGAAGCTGCCGGACTCCAGTTGCAACACCAAGTGC CTGGGCAACGCCAAGGAAATCTGCGGCGGATTCTATGCCATGAACATATA CGAGACCGGAATAGCCAAGTTCACCGCTCAACTGGCGGCCACCACTCCTT CGGAGGAAACGAAGCGCGTGCGGATCGCATTTCTGCTGACGCTCAACGGA AGAGCGCTGCGTCAGGTGCACCGACTTCTGAAGGCGCTCTATGCACCGGA GCACGTTTACTACATCCATGTGGACGAGCGCCAAGATTACCTGTACCGAA AGCTGCTGGAGTTGGAGTCAAAGTTCCCCAACATACGTTTGGCTCGGAAG CGATTCTCCACCATATGGGGTGGAGCCTCTCTCCTGACCATGCTGCTCCA GTGCATGGAGGACCTACTGCAGTCCAACTGGCACTGGGACTTTGTGATCA ACCTTAGCGAAAGTGATTTTCCAGTGAAGACCCTCGACAAGTTGGTGGAT TTCTTGAGCGCCAATCCTGGCAGGAACTTTGTTAAGGGCCACGGCCGGGA GACACAGAAGTTCATCCAGAAGCAGGGCTTGGACAAGACGTTCGTCGAGT GCGACACGCACATGTGGAGAATAGGAGATCGGAAGTTGCCAGCTGGCATT CAAGTGGACGGAGGCAGTGACTGGGTGGCGCTATCACGACCTTTTGTGGG CTATGTTACTCATCCCAGGGAAGACGATGAGTTGTTGCAGGCTCTTCTAA AGCTCTTCCGACACACGCTCCTGCCGGCGGAATCGTTTTTCCACACGGTC CTCAGGAATACCAAGCATTGCACGAGCTATGTGGACAACAACCTGCACGT CACCAACTGGAAGCGGAAGCAGGGTTGCAAATGCCAGTACAAGCATGTGG TGGATTGGTGCGGATGCAGTCCAAACGACTTTAAGCCAGAAGATTGGCCC AGGCTGCAGGCCACGGAGCAGAAATCACTGTTCTTCGCCCGCAAGTTTGA GCCCGTTATCAACCAGGCGGTGCTGCTCCAGCTGGAGGAGTGGCTCTACG GGCCATACACCAGCGAATACGCCAATCTGCACGGCTACTGGCAGTCGCTG TATCACCACGAGGATGTCCATGGATCAGGAGACGACTTGGCCAGAAGCAT TGGAGATAGCGTAATGCGTCTGTCTGCGCGTCAAGCGAAATTGTATCCCC TGGAGTTGATTGAACTCACTCACTACCTCCACCGGGACCAGTACAAGGGG TTCCTGGTGCGCTACAGAGCCAGAGGATCTACTGGAAAGCCGCTGCACTT GGAGACGAGAGTGCGACCGACGCAGCAAGGAAAGCTGGCGAGGAATGCTC GCTTCAGCAAGCGATTACGCAACTTTGAGGTCTCTACAGATTTCGATCAA AAGGAGCAGATTGCCCGCAACTTTGGAAAGCTCTTGGGTCCCCAAAGTGA CTTGCTTTTGAGCTACACACTCCAAGCAAACGCAGATTCGGGCGCCGCTT CCCATTCGTACAACCTCACCCTGCTGTGGATAGATCCGCTGGGCCGATTG CAAGATTTTAATGAATTGCATGTTGAGGATTCCACCAGCGATGTGATAAA CCACTCGAAAACCCTGCTCAAACACCCGATCACACCGGGCATCTGGACAG CCAAGTTAATAGGCCGCAATTCGATCTATGCGCAGTTGAAATTCCTAATA GCTCCACTGGCCTACTACAAGGGCTATCCGCTAGCAAAGTCCTCAGATGC TGAGGCGCTAAACGCCGGCTTGACTGTAGCTCTGCCTGAAGATTTTGAGA TGCCCGTGGAGTGGCAGCAGCACCTTCAAACCGACGACGAGCAGTTCACC ATGCGCGAGGAGTCCCTGGCCAAAGGGAAAATGCTGGGACAGGAGCTGCA CAGCTGGATTGACGGATTGGTGGGCCAATTCTTTCAACTGCGTGAGAGCT GCGTGGTGGAGGCGGACAGCGAGGTTTCCCTGCCGCTGTGCAGCGATGCG CCCTGGAGCTCACTGGCACCCGACCCCAAGAGCGATGTGGATGCCCTGCT CAAATGAGCCATTGCCATGCATTAATTTGTTATTAATTCTCTAGTGTAAA TACTCGCCAAGATTTAGATGTCGAACCGCAATTAACGATTTTTTGATAGC TCCTTTTTCTTCTCGATGTTTTCGTATAGATTGTTGTGATAATGTGAACT TTTAAGCGCCATTTTGACCGGAAGCGGAACTCCGCCGCTCCAATTGTATT TGATTTTCATATCAATAGAGCATAGTAGCACTTTGGAACTAGTTAAGTTA GTTAGGTTGAACGCCTTGTAAATACGCCACGCACTGGACACCAAAAGATC GCATTGCAGCCAAATATCGTGGAGGTAATCGAGAGTTAACTGTACATAAG GTTAGCTAGATGAAATTCCTTAACTAAGTCATAAGCTAGGGCACCACCAG ATAGCAATTGAATCAGTTGTATGTATTCACAAGTTTCTTCGATTTTTTGA TTCACATATCAAGTTATCCAAAATAAATGAGCAATTCTACGTGTACTAAA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 2258241..2260511 | 3347..1077 | 11340 | 100 | Minus |
chr3L | 24539361 | chr3L | 2261117..2262033 | 917..1 | 4555 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 2260855..2261015 | 1078..918 | 775 | 98.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 2258837..2261109 | 3349..1077 | 11365 | 100 | Minus |
3L | 28110227 | 3L | 2261715..2262631 | 917..1 | 4585 | 100 | Minus |
3L | 28110227 | 3L | 2261453..2261613 | 1078..918 | 805 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 2258837..2261109 | 3349..1077 | 11365 | 100 | Minus |
3L | 28103327 | 3L | 2261715..2262631 | 917..1 | 4585 | 100 | Minus |
3L | 28103327 | 3L | 2261453..2261613 | 1078..918 | 805 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 2258241..2260509 | 1079..3347 | 99 | <- | Minus |
chr3L | 2260855..2261015 | 918..1078 | 98 | <- | Minus |
chr3L | 2261117..2262033 | 1..917 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oxt-RB | 1..2631 | 227..2857 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oxt-RB | 1..2631 | 227..2857 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oxt-RB | 1..2631 | 227..2857 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oxt-RB | 1..2631 | 227..2857 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oxt-RB | 1..2631 | 227..2857 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oxt-RB | 31..3377 | 1..3347 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oxt-RB | 31..3377 | 1..3347 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oxt-RB | 34..3380 | 1..3347 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oxt-RB | 31..3377 | 1..3347 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oxt-RB | 34..3380 | 1..3347 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2258839..2261107 | 1079..3347 | 100 | <- | Minus |
3L | 2261453..2261613 | 918..1078 | 100 | <- | Minus |
3L | 2261715..2262631 | 1..917 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2258839..2261107 | 1079..3347 | 100 | <- | Minus |
3L | 2261453..2261613 | 918..1078 | 100 | <- | Minus |
3L | 2261715..2262631 | 1..917 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2258839..2261107 | 1079..3347 | 100 | <- | Minus |
3L | 2261453..2261613 | 918..1078 | 100 | <- | Minus |
3L | 2261715..2262631 | 1..917 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 2258839..2261107 | 1079..3347 | 100 | <- | Minus |
arm_3L | 2261453..2261613 | 918..1078 | 100 | <- | Minus |
arm_3L | 2261715..2262631 | 1..917 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2258839..2261107 | 1079..3347 | 100 | <- | Minus |
3L | 2261453..2261613 | 918..1078 | 100 | <- | Minus |
3L | 2261715..2262631 | 1..917 | 100 | Minus |
Translation from 226 to 2856
> LD43716.pep MEQSVSARWLKRYRAFFLILLLIVAIQLFLAYKSLDIVGGGSGSGFDAAE APASPPPPHAQARVQPPARTKLTAQQLGFQPECDILAREAISALQRAKTK DCREHIAQIACAIQAGRFYAPQLRSSCPAGNHTANVSLGCFKDEKDRRLL AGYYSSSKTSNSPAKCVELCLQSGYPYAGVQYGRECFCGYDPPPKASKLP DSSCNTKCLGNAKEICGGFYAMNIYETGIAKFTAQLAATTPSEETKRVRI AFLLTLNGRALRQVHRLLKALYAPEHVYYIHVDERQDYLYRKLLELESKF PNIRLARKRFSTIWGGASLLTMLLQCMEDLLQSNWHWDFVINLSESDFPV KTLDKLVDFLSANPGRNFVKGHGRETQKFIQKQGLDKTFVECDTHMWRIG DRKLPAGIQVDGGSDWVALSRPFVGYVTHPREDDELLQALLKLFRHTLLP AESFFHTVLRNTKHCTSYVDNNLHVTNWKRKQGCKCQYKHVVDWCGCSPN DFKPEDWPRLQATEQKSLFFARKFEPVINQAVLLQLEEWLYGPYTSEYAN LHGYWQSLYHHEDVHGSGDDLARSIGDSVMRLSARQAKLYPLELIELTHY LHRDQYKGFLVRYRARGSTGKPLHLETRVRPTQQGKLARNARFSKRLRNF EVSTDFDQKEQIARNFGKLLGPQSDLLLSYTLQANADSGAASHSYNLTLL WIDPLGRLQDFNELHVEDSTSDVINHSKTLLKHPITPGIWTAKLIGRNSI YAQLKFLIAPLAYYKGYPLAKSSDAEALNAGLTVALPEDFEMPVEWQQHL QTDDEQFTMREESLAKGKMLGQELHSWIDGLVGQFFQLRESCVVEADSEV SLPLCSDAPWSSLAPDPKSDVDALLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\oxt-PA | 879 | GF24873-PA | 1..879 | 1..876 | 4165 | 87.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\oxt-PA | 876 | GG14524-PA | 1..876 | 1..876 | 4602 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16481-PA | 884 | GH16481-PA | 6..883 | 4..876 | 3742 | 78.2 | Plus |
Dgri\GH10790-PA | 621 | GH10790-PA | 1..620 | 259..876 | 2750 | 81.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
oxt-PB | 876 | CG32300-PB | 1..876 | 1..876 | 4654 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12152-PA | 880 | GI12152-PA | 1..880 | 1..871 | 3592 | 75.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\oxt-PA | 830 | GL24622-PA | 1..830 | 1..876 | 3612 | 77.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\oxt-PA | 880 | GA16815-PA | 1..880 | 1..876 | 4005 | 83.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\oxt-PA | 876 | GM14129-PA | 1..876 | 1..876 | 4640 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\oxt-PA | 876 | GD13401-PA | 1..876 | 1..876 | 4657 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\oxt-PA | 885 | GJ13432-PA | 1..884 | 1..876 | 3728 | 78.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\oxt-PA | 886 | GK12594-PA | 10..886 | 4..876 | 3842 | 82.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\oxt-PA | 876 | GE21716-PA | 1..876 | 1..876 | 4575 | 96.3 | Plus |
Translation from 226 to 2856
> LD43716.hyp MEQSVSARWLKRYRAFFLILLLIVAIQLFLAYKSLDIVGGGSGSGFDAAE APASPPPPHAQARVQPPARTKLTAQQLGFQPECDILAREAISALQRAKTK DCREHIAQIACAIQAGRFYAPQLRSSCPAGNHTANVSLGCFKDEKDRRLL AGYYSSSKTSNSPAKCVELCLQSGYPYAGVQYGRECFCGYDPPPKASKLP DSSCNTKCLGNAKEICGGFYAMNIYETGIAKFTAQLAATTPSEETKRVRI AFLLTLNGRALRQVHRLLKALYAPEHVYYIHVDERQDYLYRKLLELESKF PNIRLARKRFSTIWGGASLLTMLLQCMEDLLQSNWHWDFVINLSESDFPV KTLDKLVDFLSANPGRNFVKGHGRETQKFIQKQGLDKTFVECDTHMWRIG DRKLPAGIQVDGGSDWVALSRPFVGYVTHPREDDELLQALLKLFRHTLLP AESFFHTVLRNTKHCTSYVDNNLHVTNWKRKQGCKCQYKHVVDWCGCSPN DFKPEDWPRLQATEQKSLFFARKFEPVINQAVLLQLEEWLYGPYTSEYAN LHGYWQSLYHHEDVHGSGDDLARSIGDSVMRLSARQAKLYPLELIELTHY LHRDQYKGFLVRYRARGSTGKPLHLETRVRPTQQGKLARNARFSKRLRNF EVSTDFDQKEQIARNFGKLLGPQSDLLLSYTLQANADSGAASHSYNLTLL WIDPLGRLQDFNELHVEDSTSDVINHSKTLLKHPITPGIWTAKLIGRNSI YAQLKFLIAPLAYYKGYPLAKSSDAEALNAGLTVALPEDFEMPVEWQQHL QTDDEQFTMREESLAKGKMLGQELHSWIDGLVGQFFQLRESCVVEADSEV SLPLCSDAPWSSLAPDPKSDVDALLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
oxt-PB | 876 | CG32300-PB | 1..876 | 1..876 | 4654 | 100 | Plus |