Clone LD43724 Report

Search the DGRC for LD43724

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:437
Well:24
Vector:pOT2
Associated Gene/TranscriptMink-RA
Protein status:LD43724.pep: gold
Preliminary Size:2849
Sequenced Size:2488

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11120 2001-01-01 Release 2 assignment
CG11120 2002-05-20 Blastp of sequenced clone
CG11120 2003-01-01 Sim4 clustering to Release 3
CG11120 2008-04-29 Release 5.5 accounting
CG11120 2008-08-15 Release 5.9 accounting
CG11120 2008-12-18 5.12 accounting

Clone Sequence Records

LD43724.complete Sequence

2488 bp (2488 high quality bases) assembled on 2002-05-20

GenBank Submission: AY118339

> LD43724.complete
ATCATTGGCATTTTATTTTTAAACATAAACTAAAGATCCAGCTAAAAATG
GAACTTAATATTGATAATCGCCCAAACGATGTCGGCGTCTTGGCGCCGAA
CGATCAGGAAAATGAGGACGCCAATCGGAGGATGGAAAATACAGACGCTG
TTAAGACTCCAGTGGCCAGGAAAACGCGACGAGCGGTCCTCAAGCGGATG
AATGCCACTTCGGAAAAGAATTCGCCCACGCATCCCGATCCTCCGAAGAC
ACCGGGCACTCCAGGCCATCTTAGCCAAAACACCGAAACTCCGAGACGTA
GTTGCCGGAAAAGTGTGCGTCCAGCGATCGATTACGATGACATTATAGTG
CGATCCGCCAAGAAGGCTATCGTCGAAGCACTTTCAGCCGATCCCGAGGG
CGAGGAGCCTTCCGTCCAGAAGTGGACCACCGCGGAGGTGGGAAAAAATT
CGCGCAAACGGGGTCGCAAGTCCAAGCGCATGGTCGCCAAGAAGCAGAAA
ACAGAGCACATAGTTGCAGAGGATGATGAGGAGCAGGACACGGAGTTGGA
GGTCCCACAGAAAAAGGTGGATCCTTCTCAGGATGCTGAAGGAAATGCAG
AGGTTCAAGCAGACATAGTAGAGGAAGTGGCACTATCCACGAAGAAGTCT
TCTAAAAAGTCTAAAACTAAAGATCCAGATCACGCAAATGATATTACGGA
CATTGTAGTGAATCTGGAGCAACCAATATCGATAAAGAAGTCTTCTAGGG
CGTCTAAAAATCCAGACACCAAGGAGCAAAATGTAGCTGATGAACTAGGT
TTATGCCCACTGGATATGGACAGCCAGGAAGAAGATGAGAAGGATATTCA
AGGTGGAGAAGCAAAAACAAACGCAGAGGTATTTGAAGATGAAGCCCAAA
CGAGTGCAGCCGATACGGATGGTCAGAAACATGAAGAGAAAGATGAGCAA
GCAGATGAAGCAACTAAACCAGCTGCGCTTGATAAAGACAAAGAAGTAAC
AGCTGAAGATAAACTAAAAGAAGCTAGTGCAGTAGATGAGCAAGCAGAGG
AAGAAATGCCCTCACTACTGATGGAAAGTGATGGCCTGGATGAACCAAAT
CAGTCGCCTCTCAATACCACATACGATGCAGAAGACAAGAAAGATTTTGA
TGGAAGTGTTATTCTGGTTGTTAGTCCCGACAAGCAGCCAAAGGCTAGCT
CCTCCGACCTCGATGCAAGTGTTATTCTGGTCGGCATTACCGATATGCAG
CCTGTTGTTTGCGCTCCGAAGCCGGAAATTCCGGAGGAGAAGCCGGTTAT
TAAAGTTGTGCTCACCACATCAGATGATCAGGACCAAACCCTTTTAGATT
TACCCGCTGAAGCTTCGCCAAATGTATCAAAGTCGAAGAAATCGAAGGGC
TATCGATTCCCTACGCCCTATAAGGCAAGGCCTATGTTTAACTTTACAGG
AACAGAGGAGGCAGTTCATCATGATCACGAAGTTAAAGAAGATGAACCGC
ATTACACACGCAAACGTTCCAAGTCAGCCAGCAATTGGAAAGATATCATG
TCACGAACTGTATCCTTTCAGAGTCCTATTGAGGTTGCCAATGTCGAAGA
CATTGATAAGCGCTGGGCAGGACTTCAAAAGACCAATGTCAATAACCGGC
GTAGGCGCTCAAAGTCATTGGACGAAAAACGCTGCAAGATGAGCAGGATC
CCCAAGCCCAATAGAGGTGTTATACCGCTAAACAAAACCATCACACCCAG
CAAGGTGAATAAGCGCACCAAGATGCCCAATTTTGCTGCCATGCATGAGA
GACAGTTTGCCAAGATGGAGAGTCTGGTGGACCACGTCGAACGGAAGGCG
GAACGCGCCAAGGTGCTAACCAATTCTGTACAGAAGCAAGTGCCAGGATC
GGCGGCGAAGAAAATGCAGAGCACCACGTCTGTGGAGGATCGTGCTCGTC
CAAGGGCAATGAAGAAGATCGACATGTCCGCCGATCGGACCGTGGTAATG
GATCATCCGTCCGATAAGCTGAACTCATCACGTTTGCCTTTGAAGGCCAC
CGCTCCCGCTTCTAATGTAGCTCCAAAGCCAGCTTTCAATTTGTCCACCT
CCACGGTGAAGACATTCAACGCCACGTTTTCCAGCAGACCGGCCGATTCG
CACGACAACAAGCTGGCTGAGCGACGCCAGCGGCGCATTGACATGTTCAA
GGGTAGAACAACCAAGGACCAGAAGGAGAAAGGAGAGTTTATCCGCGGAG
TGCGCCTCAACCGACGTTTTGAACTCCAAATGCAGCACCGTCGACACCTG
GAGGAGGATTAGTTTCTTAACTTGATTCGTTAATTTTACTGCTTACTACC
TATGCTTACTCATATATGTATATTCGCTTTAACATGTCAGATTTGTCGGC
GATTCGTCAGAAAACATTTAAATTTTGCTGGTTCCAATAAAGTTGTTTAC
CATTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD43724.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11120-RA 2595 CG11120-RA 80..2539 1..2460 12300 100 Plus
CG11120-RB 2638 CG11120-RB 185..2582 63..2460 11990 100 Plus
CG11120-RB 2638 CG11120-RB 59..125 1..67 320 98.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20745837..20747409 63..1635 7865 100 Plus
chr3R 27901430 chr3R 20747602..20748346 1715..2459 3725 100 Plus
chr3R 27901430 chr3R 20747462..20747544 1636..1718 415 100 Plus
chr3R 27901430 chr3R 20745711..20745777 1..67 320 98.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24922651..24924223 63..1635 7865 100 Plus
3R 32079331 3R 24924416..24925161 1715..2460 3730 100 Plus
3R 32079331 3R 24924276..24924358 1636..1718 415 100 Plus
3R 32079331 3R 24922525..24922591 1..67 320 98.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24663482..24665054 63..1635 7865 100 Plus
3R 31820162 3R 24665247..24665992 1715..2460 3730 100 Plus
3R 31820162 3R 24665107..24665189 1636..1718 415 100 Plus
3R 31820162 3R 24663356..24663422 1..67 320 98.5 Plus
Blast to na_te.dros performed 2019-03-16 11:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6700..6958 849..1109 146 54.3 Plus

LD43724.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:06:41 Download gff for LD43724.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20745711..20745773 1..63 100 -> Plus
chr3R 20745838..20747409 64..1635 100 -> Plus
chr3R 20747462..20747542 1636..1716 100 -> Plus
chr3R 20747604..20748346 1717..2459 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:30 Download gff for LD43724.complete
Subject Subject Range Query Range Percent Splice Strand
CG11120-RA 1..2265 48..2312 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:38:29 Download gff for LD43724.complete
Subject Subject Range Query Range Percent Splice Strand
CG11120-RA 1..2265 48..2312 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:52:55 Download gff for LD43724.complete
Subject Subject Range Query Range Percent Splice Strand
CG11120-RA 1..2265 48..2312 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:12 Download gff for LD43724.complete
Subject Subject Range Query Range Percent Splice Strand
CG11120-RA 1..2265 48..2312 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:15 Download gff for LD43724.complete
Subject Subject Range Query Range Percent Splice Strand
Mink-RA 1..2265 48..2312 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:11:23 Download gff for LD43724.complete
Subject Subject Range Query Range Percent Splice Strand
CG11120-RA 80..2538 1..2459 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:38:29 Download gff for LD43724.complete
Subject Subject Range Query Range Percent Splice Strand
CG11120-RA 80..2538 1..2459 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:52:55 Download gff for LD43724.complete
Subject Subject Range Query Range Percent Splice Strand
CG11120-RA 53..2511 1..2459 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:12 Download gff for LD43724.complete
Subject Subject Range Query Range Percent Splice Strand
CG11120-RA 80..2538 1..2459 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:15 Download gff for LD43724.complete
Subject Subject Range Query Range Percent Splice Strand
Mink-RA 53..2511 1..2459 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:06:41 Download gff for LD43724.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24922525..24922587 1..63 100 -> Plus
3R 24922652..24924223 64..1635 100 -> Plus
3R 24924276..24924356 1636..1716 100 -> Plus
3R 24924418..24925160 1717..2459 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:06:41 Download gff for LD43724.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24922525..24922587 1..63 100 -> Plus
3R 24922652..24924223 64..1635 100 -> Plus
3R 24924276..24924356 1636..1716 100 -> Plus
3R 24924418..24925160 1717..2459 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:06:41 Download gff for LD43724.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24922525..24922587 1..63 100 -> Plus
3R 24922652..24924223 64..1635 100 -> Plus
3R 24924276..24924356 1636..1716 100 -> Plus
3R 24924418..24925160 1717..2459 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:52:55 Download gff for LD43724.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20748247..20748309 1..63 100 -> Plus
arm_3R 20748374..20749945 64..1635 100 -> Plus
arm_3R 20749998..20750078 1636..1716 100 -> Plus
arm_3R 20750140..20750882 1717..2459 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:02:46 Download gff for LD43724.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24663483..24665054 64..1635 100 -> Plus
3R 24665107..24665187 1636..1716 100 -> Plus
3R 24665249..24665991 1717..2459 100   Plus
3R 24663356..24663418 1..63 100 -> Plus

LD43724.hyp Sequence

Translation from 2 to 2311

> LD43724.hyp
HWHFIFKHKLKIQLKMELNIDNRPNDVGVLAPNDQENEDANRRMENTDAV
KTPVARKTRRAVLKRMNATSEKNSPTHPDPPKTPGTPGHLSQNTETPRRS
CRKSVRPAIDYDDIIVRSAKKAIVEALSADPEGEEPSVQKWTTAEVGKNS
RKRGRKSKRMVAKKQKTEHIVAEDDEEQDTELEVPQKKVDPSQDAEGNAE
VQADIVEEVALSTKKSSKKSKTKDPDHANDITDIVVNLEQPISIKKSSRA
SKNPDTKEQNVADELGLCPLDMDSQEEDEKDIQGGEAKTNAEVFEDEAQT
SAADTDGQKHEEKDEQADEATKPAALDKDKEVTAEDKLKEASAVDEQAEE
EMPSLLMESDGLDEPNQSPLNTTYDAEDKKDFDGSVILVVSPDKQPKASS
SDLDASVILVGITDMQPVVCAPKPEIPEEKPVIKVVLTTSDDQDQTLLDL
PAEASPNVSKSKKSKGYRFPTPYKARPMFNFTGTEEAVHHDHEVKEDEPH
YTRKRSKSASNWKDIMSRTVSFQSPIEVANVEDIDKRWAGLQKTNVNNRR
RRSKSLDEKRCKMSRIPKPNRGVIPLNKTITPSKVNKRTKMPNFAAMHER
QFAKMESLVDHVERKAERAKVLTNSVQKQVPGSAAKKMQSTTSVEDRARP
RAMKKIDMSADRTVVMDHPSDKLNSSRLPLKATAPASNVAPKPAFNLSTS
TVKTFNATFSSRPADSHDNKLAERRQRRIDMFKGRTTKDQKEKGEFIRGV
RLNRRFELQMQHRRHLEED*

LD43724.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
Mink-PA 754 CG11120-PA 1..754 16..769 3858 100 Plus
Strn-Mlck-PT 7905 CG44162-PT 4132..4795 23..703 178 20.3 Plus
Strn-Mlck-PV 7944 CG44162-PV 4171..4834 23..703 178 20.3 Plus
Strn-Mlck-PS 8216 CG44162-PS 4132..4795 23..703 178 20.3 Plus
Strn-Mlck-PU 8255 CG44162-PU 4171..4834 23..703 178 20.3 Plus
Strn-Mlck-PT 7905 CG44162-PT 3703..4297 112..727 176 20 Plus
Strn-Mlck-PV 7944 CG44162-PV 3742..4336 112..727 176 20 Plus
Strn-Mlck-PS 8216 CG44162-PS 3703..4297 112..727 176 20 Plus
Strn-Mlck-PT 7905 CG44162-PT 3477..4102 148..727 174 20.3 Plus
Strn-Mlck-PV 7944 CG44162-PV 3516..4141 148..727 174 20.3 Plus
Strn-Mlck-PS 8216 CG44162-PS 3477..4102 148..727 174 20.3 Plus
Strn-Mlck-PT 7905 CG44162-PT 4613..5203 112..743 165 19.7 Plus
Strn-Mlck-PV 7944 CG44162-PV 4652..5242 112..743 165 19.7 Plus
Strn-Mlck-PS 8216 CG44162-PS 4613..5203 112..743 165 19.7 Plus

LD43724.pep Sequence

Translation from 47 to 2311

> LD43724.pep
MELNIDNRPNDVGVLAPNDQENEDANRRMENTDAVKTPVARKTRRAVLKR
MNATSEKNSPTHPDPPKTPGTPGHLSQNTETPRRSCRKSVRPAIDYDDII
VRSAKKAIVEALSADPEGEEPSVQKWTTAEVGKNSRKRGRKSKRMVAKKQ
KTEHIVAEDDEEQDTELEVPQKKVDPSQDAEGNAEVQADIVEEVALSTKK
SSKKSKTKDPDHANDITDIVVNLEQPISIKKSSRASKNPDTKEQNVADEL
GLCPLDMDSQEEDEKDIQGGEAKTNAEVFEDEAQTSAADTDGQKHEEKDE
QADEATKPAALDKDKEVTAEDKLKEASAVDEQAEEEMPSLLMESDGLDEP
NQSPLNTTYDAEDKKDFDGSVILVVSPDKQPKASSSDLDASVILVGITDM
QPVVCAPKPEIPEEKPVIKVVLTTSDDQDQTLLDLPAEASPNVSKSKKSK
GYRFPTPYKARPMFNFTGTEEAVHHDHEVKEDEPHYTRKRSKSASNWKDI
MSRTVSFQSPIEVANVEDIDKRWAGLQKTNVNNRRRRSKSLDEKRCKMSR
IPKPNRGVIPLNKTITPSKVNKRTKMPNFAAMHERQFAKMESLVDHVERK
AERAKVLTNSVQKQVPGSAAKKMQSTTSVEDRARPRAMKKIDMSADRTVV
MDHPSDKLNSSRLPLKATAPASNVAPKPAFNLSTSTVKTFNATFSSRPAD
SHDNKLAERRQRRIDMFKGRTTKDQKEKGEFIRGVRLNRRFELQMQHRRH
LEED*

LD43724.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16313-PA 710 GF16313-PA 269..710 248..754 918 45.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11337-PA 751 GG11337-PA 1..751 1..754 2845 75.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
Mink-PA 754 CG11120-PA 1..754 1..754 3858 100 Plus
Strn-Mlck-PT 7905 CG44162-PT 4132..4795 8..688 178 20.3 Plus
Strn-Mlck-PV 7944 CG44162-PV 4171..4834 8..688 178 20.3 Plus
Strn-Mlck-PS 8216 CG44162-PS 4132..4795 8..688 178 20.3 Plus
Strn-Mlck-PU 8255 CG44162-PU 4171..4834 8..688 178 20.3 Plus
Strn-Mlck-PT 7905 CG44162-PT 3703..4297 97..712 176 20 Plus
Strn-Mlck-PV 7944 CG44162-PV 3742..4336 97..712 176 20 Plus
Strn-Mlck-PS 8216 CG44162-PS 3703..4297 97..712 176 20 Plus
Strn-Mlck-PU 8255 CG44162-PU 3742..4336 97..712 176 20 Plus
Strn-Mlck-PT 7905 CG44162-PT 3477..4102 133..712 174 20.3 Plus
Strn-Mlck-PV 7944 CG44162-PV 3516..4141 133..712 174 20.3 Plus
Strn-Mlck-PS 8216 CG44162-PS 3477..4102 133..712 174 20.3 Plus
Strn-Mlck-PU 8255 CG44162-PU 3516..4141 133..712 174 20.3 Plus
Strn-Mlck-PT 7905 CG44162-PT 4613..5203 97..728 165 19.7 Plus
Strn-Mlck-PV 7944 CG44162-PV 4652..5242 97..728 165 19.7 Plus
Strn-Mlck-PS 8216 CG44162-PS 4613..5203 97..728 165 19.7 Plus
Strn-Mlck-PU 8255 CG44162-PU 4652..5242 97..728 165 19.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24434-PA 673 GI24434-PA 282..671 334..754 580 36.1 Plus
Dmoj\GI24434-PA 673 GI24434-PA 18..161 34..168 223 46.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24401-PA 692 GL24401-PA 1..692 1..754 1109 40.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26602-PB 634 GA26602-PB 8..634 49..754 913 39.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17771-PA 758 GM17771-PA 1..758 1..754 3510 89.6 Plus
Dsec\GM26645-PA 590 GM26645-PA 1..590 169..754 2708 89.2 Plus
Dsec\GM17774-PA 117 GM17774-PA 1..117 638..754 595 94.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21147-PA 756 GD21147-PA 1..756 1..754 3434 88.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10708-PA 686 GJ10708-PA 11..684 13..754 668 32.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12975-PA 698 GK12975-PA 24..697 37..754 838 35.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23532-PA 730 GE23532-PA 1..730 1..754 2855 74 Plus