Clone LD43816 Report

Search the DGRC for LD43816

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:438
Well:16
Vector:pOT2
Associated Gene/TranscriptCG4702-RA
Protein status:LD43816.pep: gold
Preliminary Size:1481
Sequenced Size:1354

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4702 2001-01-01 Release 2 assignment
CG4702 2001-09-19 Blastp of sequenced clone
CG4702 2003-01-01 Sim4 clustering to Release 3
CG4702 2008-04-29 Release 5.5 accounting
CG4702 2008-08-15 Release 5.9 accounting
CG4702 2008-12-18 5.12 accounting

Clone Sequence Records

LD43816.complete Sequence

1354 bp (1354 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058708

> LD43816.complete
CTCCATTTAAAGCCAGTAACCACCAGCTGTAGTGCCCAGTTAAAGCCGAA
CACTCTCGAATCGAAATTAACGAAAGAAAGTTGCCATCGATCCGACTGTC
TCAGAAAGAGAGAGCAATTTTCGTGTGCAAAGTTTTTGGGTGAATTTTTA
AGTGAATTGTGTGCTTGACAATCGCGTGCTGAAATCTGCACTTTTTCTAG
TGCGACCAGCCAAACTAACTCAGCTGCAGCTGTAATTAAAATTTAAATTG
CTTCGAGCTCGACAAATTAACAGACTGCAGATAAATAGACAGTAGTCATG
TGGAATCAACGGAAAGTACACGCCTACCTGCTGCTCTCCATAGTAGCCAG
CAATTGTCTGCTGATGACCTACGCATTTCCACAGCAGGAGGTCTATCAGA
GGCAGCACCAGGTGACCCAGTCACCTGTCTACCGGGATGAGAGTGTGGCC
AGAAAGTTTGCGGTGAAGCCGAATGCCTCGAAGAAGGTGGCTCTGGACGA
TATCGAGGATGATTTGGAGACCAATCAGATCCAAGAGAGTGTGGGAGGAC
CCGGCGGTTTCACCTGGTCTAACATGCTATCCACCGTGATGACCATGTTC
TTCAACGGAGCCGTCAACTCACCAACCAAGTCCGATGATGTGGATAGTTC
CATTGGCTTGGGCGGCAGTCCCTGGGCGAATGTTATCTCCATGGGTCTTC
GCATCATCAACACCTTGCTGGGCGGCGGAGCCCCTAGCGATGGCATCGAT
AAGGTCGACAACGGTGGATCTCCCATGCAGTTCATTCAGATCGTGATGAA
CCTGCTGGACGCCCTGAAGACCTCCTTCTCGCACCGCTCCCTGACCGCCC
GCTCCATGGGCAAGCGGGACTCGGTGAGCGACGCCGTCGTCGCCGGAATC
TCGCTGATGAAGGGCTACGTCCGAACCTATCGCACCTCGGAGGACAAGTG
CACGCAGCGGTACATGTGCGACGCCAATACGGAGTGCGTCCGTGAGATCG
GCGGCAGCAGCATCTTCTGCCAGCTGGGATCTTATGCCACCAGCTATGTC
CTAGGCCGCACCAGTGGCAGCAACTTCGAGGAGCTGTACGACGCCGGACG
TAGAGGTCGCTCCGGATTCGACTGTCGCCAGATCTATCTGGAGTGCAACG
AGGTCTAGACTTCCCAGTGGCCACCGACTGGACTCTCCCTAAAATAATTT
AAATTAATTTATGACTTCCCTAGATGTTAGCTATTTATATTATTTATTTA
AAAAATCTGTACTTATGGTCGCCGTAAAATGCGACTGGCTTCTAAGTTGA
CAAAGAAAAGCGTTAAAAATACATGCATTAAATGACAAAAAAAAAAAAAA
AAAA

LD43816.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4702-RA 1454 CG4702-RA 113..1452 1..1340 6700 100 Plus
CG4702.b 1380 CG4702.b 42..1378 1..1340 6630 99.7 Plus
CG4702.d 1574 CG4702.d 236..1572 1..1340 6630 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7948856..7949262 696..290 2035 100 Minus
chr3R 27901430 chr3R 7946977..7947281 1336..1032 1495 99.3 Minus
chr3R 27901430 chr3R 7953267..7953558 292..1 1460 100 Minus
chr3R 27901430 chr3R 7947566..7947819 1031..778 1240 99.2 Minus
chr3R 27901430 chr3R 7948688..7948774 780..694 435 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12123461..12123867 696..290 2035 100 Minus
3R 32079331 3R 12121579..12121887 1340..1032 1545 100 Minus
3R 32079331 3R 12127871..12128162 292..1 1460 100 Minus
3R 32079331 3R 12122171..12122424 1031..778 1270 100 Minus
3R 32079331 3R 12123293..12123379 780..694 435 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11864292..11864698 696..290 2035 100 Minus
3R 31820162 3R 11862410..11862718 1340..1032 1545 100 Minus
3R 31820162 3R 11868702..11868993 292..1 1460 100 Minus
3R 31820162 3R 11863002..11863255 1031..778 1270 100 Minus
3R 31820162 3R 11864124..11864210 780..694 435 100 Minus
Blast to na_te.dros performed 2019-03-16 11:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 5773..5829 1249..1193 114 66.7 Minus

LD43816.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:22:41 Download gff for LD43816.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7948688..7948773 695..780 100 <- Minus
chr3R 7947566..7947816 781..1031 99 <- Minus
chr3R 7948858..7949259 293..694 100 <- Minus
chr3R 7953267..7953558 1..292 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:33 Download gff for LD43816.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 1..861 298..1158 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:59:07 Download gff for LD43816.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 1..861 298..1158 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:39:09 Download gff for LD43816.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 1..861 298..1158 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:29:30 Download gff for LD43816.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 1..861 298..1158 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:51 Download gff for LD43816.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 1..861 298..1158 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:46:08 Download gff for LD43816.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 36..1371 1..1336 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:59:07 Download gff for LD43816.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 36..1371 1..1336 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:09 Download gff for LD43816.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 40..1375 1..1336 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:29:30 Download gff for LD43816.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 36..1371 1..1336 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:51 Download gff for LD43816.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 40..1375 1..1336 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:22:41 Download gff for LD43816.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12123463..12123864 293..694 100 <- Minus
3R 12127871..12128162 1..292 100   Minus
3R 12121583..12121887 1032..1336 100 <- Minus
3R 12122171..12122421 781..1031 100 <- Minus
3R 12123293..12123378 695..780 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:22:41 Download gff for LD43816.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12123463..12123864 293..694 100 <- Minus
3R 12127871..12128162 1..292 100   Minus
3R 12121583..12121887 1032..1336 100 <- Minus
3R 12122171..12122421 781..1031 100 <- Minus
3R 12123293..12123378 695..780 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:22:41 Download gff for LD43816.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12123463..12123864 293..694 100 <- Minus
3R 12127871..12128162 1..292 100   Minus
3R 12121583..12121887 1032..1336 100 <- Minus
3R 12122171..12122421 781..1031 100 <- Minus
3R 12123293..12123378 695..780 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:09 Download gff for LD43816.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7947305..7947609 1032..1336 100 <- Minus
arm_3R 7947893..7948143 781..1031 100 <- Minus
arm_3R 7949015..7949100 695..780 100 <- Minus
arm_3R 7949185..7949586 293..694 100 <- Minus
arm_3R 7953593..7953884 1..292 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:05:49 Download gff for LD43816.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11863002..11863252 781..1031 100 <- Minus
3R 11864124..11864209 695..780 100 <- Minus
3R 11862414..11862718 1032..1336 100 <- Minus
3R 11864294..11864695 293..694 100 <- Minus
3R 11868702..11868993 1..292 100   Minus

LD43816.hyp Sequence

Translation from 297 to 1157

> LD43816.hyp
MWNQRKVHAYLLLSIVASNCLLMTYAFPQQEVYQRQHQVTQSPVYRDESV
ARKFAVKPNASKKVALDDIEDDLETNQIQESVGGPGGFTWSNMLSTVMTM
FFNGAVNSPTKSDDVDSSIGLGGSPWANVISMGLRIINTLLGGGAPSDGI
DKVDNGGSPMQFIQIVMNLLDALKTSFSHRSLTARSMGKRDSVSDAVVAG
ISLMKGYVRTYRTSEDKCTQRYMCDANTECVREIGGSSIFCQLGSYATSY
VLGRTSGSNFEELYDAGRRGRSGFDCRQIYLECNEV*

LD43816.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4702-PC 286 CG4702-PC 1..286 1..286 1486 100 Plus
CG4702-PA 286 CG4702-PA 1..286 1..286 1486 100 Plus
CG4702-PD 314 CG4702-PD 1..314 1..286 1447 91.1 Plus
CG4702-PB 314 CG4702-PB 1..314 1..286 1447 91.1 Plus

LD43816.pep Sequence

Translation from 297 to 1157

> LD43816.pep
MWNQRKVHAYLLLSIVASNCLLMTYAFPQQEVYQRQHQVTQSPVYRDESV
ARKFAVKPNASKKVALDDIEDDLETNQIQESVGGPGGFTWSNMLSTVMTM
FFNGAVNSPTKSDDVDSSIGLGGSPWANVISMGLRIINTLLGGGAPSDGI
DKVDNGGSPMQFIQIVMNLLDALKTSFSHRSLTARSMGKRDSVSDAVVAG
ISLMKGYVRTYRTSEDKCTQRYMCDANTECVREIGGSSIFCQLGSYATSY
VLGRTSGSNFEELYDAGRRGRSGFDCRQIYLECNEV*

LD43816.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17745-PA 286 GF17745-PA 1..286 1..286 1469 94.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17159-PA 286 GG17159-PA 1..286 1..286 1533 99.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15544-PA 318 GH15544-PA 1..318 1..286 1279 80.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4702-PC 286 CG4702-PC 1..286 1..286 1486 100 Plus
CG4702-PA 286 CG4702-PA 1..286 1..286 1486 100 Plus
CG4702-PD 314 CG4702-PD 1..314 1..286 1447 91.1 Plus
CG4702-PB 314 CG4702-PB 1..314 1..286 1447 91.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22477-PA 324 GI22477-PA 1..324 1..286 1299 76.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21575-PA 286 GL21575-PA 1..286 1..286 1456 93.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18368-PB 286 GA18368-PB 1..286 1..286 1456 93.4 Plus
Dpse\GA18368-PA 314 GA18368-PA 1..314 1..286 1421 85 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26041-PA 286 GM26041-PA 1..286 1..286 1535 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20603-PA 286 GD20603-PA 1..286 1..286 1538 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10076-PA 318 GJ10076-PA 1..318 1..286 1274 80.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11568-PA 315 GK11568-PA 1..315 1..286 1239 78.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24548-PA 286 GE24548-PA 1..286 1..286 1522 99 Plus