Clone LD43819 Report

Search the DGRC for LD43819

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:438
Well:19
Vector:pOT2
Associated Gene/TranscriptCG1416-RA
Protein status:LD43819.pep: gold
Preliminary Size:1774
Sequenced Size:1594

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1416 2001-01-01 Release 2 assignment
CG1416 2002-06-10 Blastp of sequenced clone
CG1416 2003-01-01 Sim4 clustering to Release 3
CG1416 2008-04-29 Release 5.5 accounting
CG1416 2008-08-15 Release 5.9 accounting
CG1416 2008-12-18 5.12 accounting

Clone Sequence Records

LD43819.complete Sequence

1594 bp (1594 high quality bases) assembled on 2002-06-10

GenBank Submission: AY121650

> LD43819.complete
GTGGCAACGCTGCCAACATATGTGTGCACTGGCATCGATAATTTTTACAT
CCCTATTTTGAACCGCAGAATTCTAGAAAATTCCACTCGCTGGCCATAGT
AATTGTCCGAATTAGTTTAAGCTAAGACTGCCGGATCAAAAGTAAACCAA
CATCTTCCATCTTTTCATAAAATTGAAGACAGTTTCATACAATTCTACAG
TAAGAAAGCGATGGCCAAGTGGGGAGAAGGAGATCCGCGCTGGATTGTGG
AGGAGCGGCCCGACGCCACCAACGTGAACAACTGGCACTGGACGGAAAAG
AACGCCACGCCATGGTCCAAGGACCGCCTGCATCAGCTTTTTCAGGATTT
CAAAATAGGGCAAAGCGACATTGAGTGTGCCGTGGACTCCGTGGACAAAT
GCTCCGGGGAGGCCACCGTGAACAATCGCAAGGGCAAGCTCATATTTTTC
TACGAGTGGGAGCTGGTGCTCAAGTGGTCTGGAAAGCTCCTAAAGAACAG
CAAGCTGATCCACAAGGGCAAGTTAACCATTCCCAATCTCTCCGAGGAGA
ACGAACTAGCCGACGTAGAGATCACGGTGACAATCGACGAGTCCAACGAC
GAGTCGGAGACCCTGAAACAGTTCATGTACAACGTGGGACGAGACCGCGT
GCGGCAGCAACTGGCTTCCTACATCCGAGAGTTGAAGGAGGAGTACTCCA
AGAACCTTATCCTACCAAAGAAGGGCGACGAGGCCGGAGCGGGAAATACT
GTGGCGAATTTTAAGGATGCCAACAATACCCGTAATGCAGCCCAAAATAT
CGCTTTAAACTCCTCGGTGGCGGCTCCTAGGCTGAAGAACTCTGGCATCG
GCTGTAAACTGGACGTTCGCACTCTCTCGATGACCGAAGAATTTCACTGC
AGCGCCAATGACCTTTACAACGCTCTCACAAAGCCAGAAATGGTCACTGC
CTTTACGAGGGCACCTGCCAAAGTAGATGCCGTGCGCGGTGGAGAATTTA
TTCTTTACGGAGGCAATGTGCTCGGAAAATTCGAAGAGCTCGTCCCTGAA
AAAAAAATACAGCAGAGCTGGCGTCTGAAAAACTGGACATCTGGTCACTA
CTCAAACGTTGTCATAGAGCTGGAAGAAACTTCATCCAGCACAATGATGT
CGCTCAAGCAGACCGGGATACCCGCGTCCGAATTTGATGCGATGAAGACA
AACTGGTACCGATATTACTGGCATAGCATCAAACAGACCTTTGGATTCGG
TACCTCAATATCTGATGCCTTATAAGAGGACGCTTCTAGTGCGGATTGCA
CTGAATGATTGAGGGCTTGGTGTATGGCGGATTATCGAAGGATTATTATT
TGTATTCAACCTAGAGTACTGCGAGAATTTCATTTCCAATCATAACTGTA
ATTTCTGTTTATCCTTAGAGGCTTTTTCAAATCCTCTTAGGTATATCGAT
CGAACTGGAAAGTCCGCGGCTCGCTAAAAAAACACATTACTTACAAAAAA
TCGAATACAATTCAGGCATTCGACATTGATTTCACACATTGAGAAACAAT
AAACAATAATTTAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD43819.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1416-RA 1743 CG1416-RA 96..1666 1..1571 7855 100 Plus
CG1416-RB 1684 CG1416-RB 237..1607 201..1571 6855 100 Plus
CG1416-RC 1465 CG1416-RC 99..1465 201..1567 6835 100 Plus
CG1416-RB 1684 CG1416-RB 96..236 1..141 705 100 Plus
CG1416-RC 1465 CG1416-RC 1..98 1..98 490 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 21756977..21757615 357..995 3165 99.7 Plus
chr2L 23010047 chr2L 21759011..21759446 1132..1567 2180 100 Plus
chr2L 23010047 chr2L 21756539..21756897 1..359 1795 100 Plus
chr2L 23010047 chr2L 21757768..21757903 996..1131 665 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21758440..21759078 357..995 3195 100 Plus
2L 23513712 2L 21760480..21760919 1132..1571 2200 100 Plus
2L 23513712 2L 21758002..21758360 1..359 1795 100 Plus
2L 23513712 2L 21759231..21759366 996..1131 680 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21758440..21759078 357..995 3195 100 Plus
2L 23513712 2L 21760480..21760919 1132..1571 2200 100 Plus
2L 23513712 2L 21758002..21758360 1..359 1795 100 Plus
2L 23513712 2L 21759231..21759366 996..1131 680 100 Plus
Blast to na_te.dros performed 2019-03-16 22:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 644..746 493..597 113 63.9 Plus
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 189..266 1489..1567 113 62 Plus

LD43819.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:08:33 Download gff for LD43819.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 21756539..21756896 1..358 100 -> Plus
chr2L 21756979..21757615 359..995 99 -> Plus
chr2L 21757768..21757903 996..1131 99 -> Plus
chr2L 21759011..21759433 1132..1554 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:34 Download gff for LD43819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RC 1..1065 211..1275 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:26:51 Download gff for LD43819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RC 1..1065 211..1275 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:10:26 Download gff for LD43819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RA 1..1065 211..1275 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:17:16 Download gff for LD43819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RC 1..1065 211..1275 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:46 Download gff for LD43819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RA 1..1065 211..1275 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:55:20 Download gff for LD43819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RA 1..1567 1..1567 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:26:50 Download gff for LD43819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RA 1..1567 1..1567 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:26 Download gff for LD43819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RA 1..1559 9..1567 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:17:16 Download gff for LD43819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RA 1..1567 1..1567 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:46 Download gff for LD43819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RA 1..1559 9..1567 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:08:33 Download gff for LD43819.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21758002..21758359 1..358 100 -> Plus
2L 21758442..21759078 359..995 100 -> Plus
2L 21759231..21759366 996..1131 100 -> Plus
2L 21760480..21760915 1132..1567 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:08:33 Download gff for LD43819.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21758002..21758359 1..358 100 -> Plus
2L 21758442..21759078 359..995 100 -> Plus
2L 21759231..21759366 996..1131 100 -> Plus
2L 21760480..21760915 1132..1567 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:08:33 Download gff for LD43819.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21758002..21758359 1..358 100 -> Plus
2L 21758442..21759078 359..995 100 -> Plus
2L 21759231..21759366 996..1131 100 -> Plus
2L 21760480..21760915 1132..1567 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:26 Download gff for LD43819.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21758002..21758359 1..358 100 -> Plus
arm_2L 21758442..21759078 359..995 100 -> Plus
arm_2L 21759231..21759366 996..1131 100 -> Plus
arm_2L 21760480..21760915 1132..1567 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:50:39 Download gff for LD43819.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21758002..21758359 1..358 100 -> Plus
2L 21758442..21759078 359..995 100 -> Plus
2L 21759231..21759366 996..1131 100 -> Plus
2L 21760480..21760915 1132..1567 100   Plus

LD43819.pep Sequence

Translation from 210 to 1274

> LD43819.pep
MAKWGEGDPRWIVEERPDATNVNNWHWTEKNATPWSKDRLHQLFQDFKIG
QSDIECAVDSVDKCSGEATVNNRKGKLIFFYEWELVLKWSGKLLKNSKLI
HKGKLTIPNLSEENELADVEITVTIDESNDESETLKQFMYNVGRDRVRQQ
LASYIRELKEEYSKNLILPKKGDEAGAGNTVANFKDANNTRNAAQNIALN
SSVAAPRLKNSGIGCKLDVRTLSMTEEFHCSANDLYNALTKPEMVTAFTR
APAKVDAVRGGEFILYGGNVLGKFEELVPEKKIQQSWRLKNWTSGHYSNV
VIELEETSSSTMMSLKQTGIPASEFDAMKTNWYRYYWHSIKQTFGFGTSI
SDAL*

LD43819.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21442-PA 356 GF21442-PA 1..356 1..354 1691 86.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21345-PA 354 GG21345-PA 1..354 1..354 1813 94.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10442-PA 361 GH10442-PA 1..361 1..354 1515 78.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1416-PC 354 CG1416-PC 1..354 1..354 1870 100 Plus
CG1416-PB 354 CG1416-PB 1..354 1..354 1870 100 Plus
CG1416-PA 354 CG1416-PA 1..354 1..354 1870 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17698-PA 361 GI17698-PA 1..355 1..349 1456 79.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25651-PA 357 GL25651-PA 1..357 1..354 1556 81.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12794-PA 357 GA12794-PA 1..357 1..354 1556 81.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16143-PA 354 GM16143-PA 1..354 1..354 1823 96 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24332-PA 354 GD24332-PA 1..354 1..354 1841 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11322-PA 358 GJ11322-PA 1..358 1..354 1544 81.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18713-PA 356 GK18713-PA 1..356 1..354 1575 81.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12927-PA 350 GE12927-PA 1..350 1..354 1787 94.1 Plus

LD43819.hyp Sequence

Translation from 210 to 1274

> LD43819.hyp
MAKWGEGDPRWIVEERPDATNVNNWHWTEKNATPWSKDRLHQLFQDFKIG
QSDIECAVDSVDKCSGEATVNNRKGKLIFFYEWELVLKWSGKLLKNSKLI
HKGKLTIPNLSEENELADVEITVTIDESNDESETLKQFMYNVGRDRVRQQ
LASYIRELKEEYSKNLILPKKGDEAGAGNTVANFKDANNTRNAAQNIALN
SSVAAPRLKNSGIGCKLDVRTLSMTEEFHCSANDLYNALTKPEMVTAFTR
APAKVDAVRGGEFILYGGNVLGKFEELVPEKKIQQSWRLKNWTSGHYSNV
VIELEETSSSTMMSLKQTGIPASEFDAMKTNWYRYYWHSIKQTFGFGTSI
SDAL*

LD43819.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1416-PC 354 CG1416-PC 1..354 1..354 1870 100 Plus
CG1416-PB 354 CG1416-PB 1..354 1..354 1870 100 Plus
CG1416-PA 354 CG1416-PA 1..354 1..354 1870 100 Plus