Clone LD43863 Report

Search the DGRC for LD43863

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:438
Well:63
Vector:pOT2
Associated Gene/TranscriptCG4497-RA
Protein status:LD43863.pep: gold
Preliminary Size:2704
Sequenced Size:2581

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4497 2001-01-01 Release 2 assignment
CG4497 2002-06-17 Blastp of sequenced clone
CG4497 2003-01-01 Sim4 clustering to Release 3
CG4497 2008-04-29 Release 5.5 accounting
CG4497 2008-08-15 Release 5.9 accounting
CG4497 2008-12-18 5.12 accounting

Clone Sequence Records

LD43863.complete Sequence

2581 bp (2581 high quality bases) assembled on 2002-06-17

GenBank Submission: AY128449

> LD43863.complete
TCAACACTATAAAAAAACTAAACTGGTAGCTGAAAATTACAATCACAGGA
CATAATTTTATAAACGCCAATGGAATCGGAGACGAAAGCGAGCGCCGAGG
AGAAGCAGCAGGAGAACCCCTCGACAGTGCCCATGGACACGCTGGATCCG
CCGCCACCGTGTGGCAGCTCCAAGACCCTCAAACGCTGCCTCAGTGTGCC
AATAATCCGGACTCCGCCGGCGGGCAAATCGGGAAAGACGCCGATGACCA
CACGCGCAGCCGCAGCGGCTGCTCTGGCGGCCAAGGAGCACGAGCAGACG
CCCAAGAAGAGCCAACAGGTGGTGGATATCCAAATGCCGAATGCCCCATC
CATCGATTGCTTCGGCAAGAACATACACATACGATCGCAGCCCAATTCCA
GGGAGGTTTCACCGGCTCCCGTCTTCAATATATTCACACCTCGAGCCAGA
AGGTATTCGGCCAGCTATAGTCCACTGACCACGGCAGCCAATGGAGCCAC
TCTCTGTCTCACGCCTCGAGTTTCGCAGCTGCGGCAGGAGGAATGCGCAG
ATCTAAACAGCCGGGAGGTTAACCATGAGCGGGAAGTTCATCGGGAAATA
CAAATTTCGCAGAGCTGGGAGGATCTCACGCTGGTGGCCGAGAACTGGTC
GTGCAAATCGGACGAGTTCTCCAATCCCCTGCAGGTCAGCCTGCCACCCA
CCGGCACCACCAGCTGCTCCAGTCCCAGTCCCACAAACAATCGCGCGGGC
ATGAGATTACCATACTCCCCGTCGCCGACGAGACGTACTTTCGCCACCAG
GCGGTCGATGTCTCCCATAGCCATGAGGCCATCCCAGCTGGGACCCGTGA
AGAGAAAATTTGAGCTGGACGATAACCCCACTCAGGGCAGCAACTGGAGC
GTGTACTCACCTCCGCCTGTGAAGAAGATATTCACGGAAAGTCGCGGCTC
CTCACCGGTGTGCCAATCGCCCTCGTCGGTGTGTCCCAGTCCCGATTCCG
GAACCTTTGACGGCCGCCTCACGCCCAAGTTGTTCATCTCGAAGCTGTGC
ACAAGCAATTCGGTGAGCGGAAATGGGATAAATAACAATAGCAGCAGCTC
GGGATGTCCGTCGCCTGTTTCCGCCTCGCCCGGAGGTGTTGGCAGCGGTC
CCAATCTGGAGGCAGCCATGTGCCTCGTTTCCGGCGGCAGTCAGAGCCAA
AGCATCGACGAGGGTATCTCGATACCCGAATCGGAGACGCACTCCTGCCG
CAGTCGCACCTCTTCCATAGTGTCCACCGCATCGTCCAGTACGCAGGTGC
TGGTCAACGACCTGGTGGATGATGCCACTCTGATGGACGATGCCAAAAGT
GAGACCTCATCGATCGGTGGATGCTCCACCATTAGCATAGAGTCATCCTC
CTGCGATAGTGGTGCCAAGACGGCTGCCACTTTCCTGAATCGCCTGGTGG
TTGATTCCGATGGCGGTGGTTCGCCGCTGGCCCAAAAGAGCTTCTACATT
AACAAGCAGGGATTGTCGGGCGCCAAGAAGTTTGTGGTCAATCACGAGCG
AACGGGAGCCGTCAGCAAAGATGTGCCGCAAAAGCTTTAAGAACATACAC
AGATTAACTTAGTTTAGGGGTCGATTTTAGGAAATTCTAAGAAATGCTTA
TAATCTCAGGAGCCAAAAGTTAATCATTGCTGCACTTTAGCTGATTTGTT
TTGAATGCTTTAGAAAATATTTTCGAATAAAATTGCATAGCTTGATCATT
TTTAAGTTCTAAAACTCAACCAAAGGTTTTGTTATAAAAACCACAAGCAA
TATTTTTTTAGAAAGAAAATTGAATTAAGAATACCTTTGGTGTAATATGT
AAAGGATTAAAAATGGTTTAAAATGTATATTTCCCGTAGTGTTCAAAACA
AATCTTCGTGGAAGAGACAAAAGATAAATTAGTGGTACTTTGATTTTTGT
TTAAGAAAATCGACCCGAAATAACCAATTACACACACACGCTTAAGTTGA
GAGTTTCAAAAGATCCTCCGACTTGCTTAACTTTAGATCGTAGCTTTGTT
GTACATAGTTAAGTTGTTTGTCTGAAGTTCTAAACCATCTTGCATATCAT
TTAACGCTGCGCACTTCCCTTCACCCCTAGAATCAATCGGTTTTAATATG
TTAGCCTAAGGTTCACTATACTATATATAGCCAGAGTTTATTGCCTCGAT
CTTTGTGTTATAGAATGTTTTCCCATTTCCAATGTTTCGGTTAATAATCG
ACGTACATTAGTTTTGTTTTTAGTCGCCACCTCACCCCTTAGATATTAGG
AAGAAAACCCCAATTTTGCCAAATATGTTTATTCTATGCTTATGTGTAAT
AATATATCCAGCATTATATTGCCTATAATGTGATCCAATTTAGCGCGGAT
ATCTGCGCGTATCCCACAAAAACCTTACTGATATAGTAACGCATATATTA
TATAGATTTACGATCCGATTCTAATTATCGTAAGCGAATTTACATAGTTT
CAAGAAAAAAAGTTATACTTAAAAAGGATCCAAAAAGAAATACACATTTT
TTCAATTGATCAAAAAAAAAAAAAAAAAAAA

LD43863.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4497.a 2727 CG4497.a 167..2727 1..2561 12805 100 Plus
CG4497-RA 2005 CG4497-RA 167..2005 1..1839 9195 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7189447..7191068 2561..940 8065 99.8 Minus
chr2L 23010047 chr2L 7191503..7192384 941..60 4410 100 Minus
chr2L 23010047 chr2L 7193356..7193418 63..1 300 98.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7190428..7192052 2564..940 8125 100 Minus
2L 23513712 2L 7192492..7193373 941..60 4410 100 Minus
2L 23513712 2L 7194346..7194408 63..1 300 98.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7190428..7192052 2564..940 8125 100 Minus
2L 23513712 2L 7192492..7193373 941..60 4410 100 Minus
2L 23513712 2L 7194346..7194408 63..1 300 98.4 Minus
Blast to na_te.dros performed on 2019-03-16 12:01:49 has no hits.

LD43863.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:02:45 Download gff for LD43863.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7189447..7191066 942..2561 99 <- Minus
chr2L 7191503..7192384 60..941 100 <- Minus
chr2L 7193360..7193418 1..59 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:35 Download gff for LD43863.complete
Subject Subject Range Query Range Percent Splice Strand
CG4497-RA 1..1521 70..1590 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:20:09 Download gff for LD43863.complete
Subject Subject Range Query Range Percent Splice Strand
CG4497-RB 1..1521 70..1590 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:48:24 Download gff for LD43863.complete
Subject Subject Range Query Range Percent Splice Strand
CG4497-RA 1..1521 70..1590 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:11:09 Download gff for LD43863.complete
Subject Subject Range Query Range Percent Splice Strand
CG4497-RA 1..1521 70..1590 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:48 Download gff for LD43863.complete
Subject Subject Range Query Range Percent Splice Strand
CG4497-RA 1..1521 70..1590 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:45:50 Download gff for LD43863.complete
Subject Subject Range Query Range Percent Splice Strand
CG4497-RA 5..1594 1..1590 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:20:09 Download gff for LD43863.complete
Subject Subject Range Query Range Percent Splice Strand
CG4497-RB 181..2741 1..2561 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:48:24 Download gff for LD43863.complete
Subject Subject Range Query Range Percent Splice Strand
CG4497-RA 6..2566 1..2561 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:11:09 Download gff for LD43863.complete
Subject Subject Range Query Range Percent Splice Strand
CG4497-RA 5..1594 1..1590 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:48 Download gff for LD43863.complete
Subject Subject Range Query Range Percent Splice Strand
CG4497-RA 6..2566 1..2561 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:02:45 Download gff for LD43863.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7192492..7193373 60..941 100 <- Minus
2L 7194350..7194408 1..59 100   Minus
2L 7190431..7192050 942..2561 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:02:45 Download gff for LD43863.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7192492..7193373 60..941 100 <- Minus
2L 7194350..7194408 1..59 100   Minus
2L 7190431..7192050 942..2561 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:02:45 Download gff for LD43863.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7192492..7193373 60..941 100 <- Minus
2L 7194350..7194408 1..59 100   Minus
2L 7190431..7192050 942..2561 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:48:24 Download gff for LD43863.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7190431..7192050 942..2561 100 <- Minus
arm_2L 7192492..7193373 60..941 100 <- Minus
arm_2L 7194350..7194408 1..59 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:43:33 Download gff for LD43863.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7190431..7192050 942..2561 100 <- Minus
2L 7192492..7193373 60..941 100 <- Minus
2L 7194350..7194408 1..59 100   Minus

LD43863.hyp Sequence

Translation from 69 to 1589

> LD43863.hyp
MESETKASAEEKQQENPSTVPMDTLDPPPPCGSSKTLKRCLSVPIIRTPP
AGKSGKTPMTTRAAAAAALAAKEHEQTPKKSQQVVDIQMPNAPSIDCFGK
NIHIRSQPNSREVSPAPVFNIFTPRARRYSASYSPLTTAANGATLCLTPR
VSQLRQEECADLNSREVNHEREVHREIQISQSWEDLTLVAENWSCKSDEF
SNPLQVSLPPTGTTSCSSPSPTNNRAGMRLPYSPSPTRRTFATRRSMSPI
AMRPSQLGPVKRKFELDDNPTQGSNWSVYSPPPVKKIFTESRGSSPVCQS
PSSVCPSPDSGTFDGRLTPKLFISKLCTSNSVSGNGINNNSSSSGCPSPV
SASPGGVGSGPNLEAAMCLVSGGSQSQSIDEGISIPESETHSCRSRTSSI
VSTASSSTQVLVNDLVDDATLMDDAKSETSSIGGCSTISIESSSCDSGAK
TAATFLNRLVVDSDGGGSPLAQKSFYINKQGLSGAKKFVVNHERTGAVSK
DVPQKL*

LD43863.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4497-PB 506 CG4497-PB 1..506 1..506 2618 100 Plus
CG4497-PA 506 CG4497-PA 1..506 1..506 2618 100 Plus

LD43863.pep Sequence

Translation from 69 to 1589

> LD43863.pep
MESETKASAEEKQQENPSTVPMDTLDPPPPCGSSKTLKRCLSVPIIRTPP
AGKSGKTPMTTRAAAAAALAAKEHEQTPKKSQQVVDIQMPNAPSIDCFGK
NIHIRSQPNSREVSPAPVFNIFTPRARRYSASYSPLTTAANGATLCLTPR
VSQLRQEECADLNSREVNHEREVHREIQISQSWEDLTLVAENWSCKSDEF
SNPLQVSLPPTGTTSCSSPSPTNNRAGMRLPYSPSPTRRTFATRRSMSPI
AMRPSQLGPVKRKFELDDNPTQGSNWSVYSPPPVKKIFTESRGSSPVCQS
PSSVCPSPDSGTFDGRLTPKLFISKLCTSNSVSGNGINNNSSSSGCPSPV
SASPGGVGSGPNLEAAMCLVSGGSQSQSIDEGISIPESETHSCRSRTSSI
VSTASSSTQVLVNDLVDDATLMDDAKSETSSIGGCSTISIESSSCDSGAK
TAATFLNRLVVDSDGGGSPLAQKSFYINKQGLSGAKKFVVNHERTGAVSK
DVPQKL*

LD43863.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24428-PA 509 GF24428-PA 1..509 1..506 2167 89.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23548-PA 506 GG23548-PA 1..506 1..506 2609 98.2 Plus
Dere\GG10879-PA 220 GG10879-PA 10..194 102..286 950 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13160-PA 514 GH13160-PA 1..514 22..506 1595 73.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4497-PB 506 CG4497-PB 1..506 1..506 2618 100 Plus
CG4497-PA 506 CG4497-PA 1..506 1..506 2618 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17800-PA 544 GI17800-PA 17..544 2..506 1616 72.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16229-PA 403 GL16229-PA 1..229 1..224 833 76.6 Plus
Dper\GL16229-PA 403 GL16229-PA 264..403 367..506 531 86.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18223-PA 516 GA18223-PA 1..516 1..506 1834 80 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13618-PA 506 GM13618-PA 1..506 1..506 2633 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22509-PA 506 GD22509-PA 1..506 1..506 2623 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17624-PA 545 GJ17624-PA 36..545 20..506 1581 75.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24735-PA 546 GK24735-PA 1..546 1..506 1617 69.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18373-PA 506 GE18373-PA 1..506 1..506 2610 98.4 Plus