Clone LD43876 Report

Search the DGRC for LD43876

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:438
Well:76
Vector:pOT2
Associated Gene/Transcriptunc-119-RA
Protein status:LD43876.pep: gold
Preliminary Size:1192
Sequenced Size:2030

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1659 2002-05-30 Blastp of sequenced clone
unc-119 2008-04-29 Release 5.5 accounting
unc-119 2008-08-15 Release 5.9 accounting
unc-119 2008-12-18 5.12 accounting

Clone Sequence Records

LD43876.complete Sequence

2030 bp (2030 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118580

> LD43876.complete
CTGAGTAGTGCAAAAAAAGTGGGCAAAAAAGGTGCAATGTTTAGCGTTTA
AGTGCGTTAAGTTGCTTTTGCGGACGACAACAACAACACCAGCAGCATTG
CCGGTCAAATTGATCTAATTGATTTTCGGGCAGTGCCAACAGCAACTAAA
ACCAAATTAATAAATGAATCCCTGCGCATACATAAACATATAAAAACACA
CACACACACACATACATTCGCATAAAGGACGCGAACCGAAAAGGGAAAAA
CAAACACAAAGGAAAAAAAAAGGAAAAAGGAGAGCGCAGCTTTTTCAGAA
ATTGGGTCATTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGTTGCTGGTGA
TTTTCAAACGAATTTCATTTGTTGCTGTCGTCGTCGGTTCGGTGTTGTTG
TTGTTGTTGCTGTTGTTGCAATGGTCGTGGACGTTGTTGTCGCTGACAGC
TAAATGTTATGGCAACACTTGCAACCTGAATTCGTGTGGTGAGGAGCGGA
AAGCGAAAGGATAATAGGGTAGCGGAGACGAAGCCTTATATTTCCACCAG
AAAATCCTGGCACAATTTATGACAACTCTACACTTGTGTGTGTTTGTGTT
GAGTGAGACAGCGGAGTAGCTTCTTCAAATCAAAGGATACCACTGCAGCA
GCCATCCAGCCAGGAGCCTTAAAAAAGCTGTTCAGCTTGAGAAATCCGAA
ACGCAGACTATAGACAAATAATACCACCAGATTCATTCCGTGCACAATGA
GCGTGGTGGGTAAGCAACTAAATCCGGTGCAATCCTCCGGTGCAGGCGCA
GTGACAACGTCTTCCTCCGCGGCCGCAGGATCCTCTTCTTCGAACAGTGG
AGTGGAGGCCAACGGCGGCAGTGGAGGATCGTCGGGAGCTGCAGCAGCGG
GCGCTGGTGCCTCCGGTGATGCCAAACGGCCTGCGGAGTCTTCCAGCGTG
ACTCCCGACGAGGTGCTCCATCTGACCAAGATCACGGACGACTATCTCTG
CTCCGCCAATGCAAATGTGTTCGAGATTGATTTCACGCGGTTCAAGATTC
GCGACCTGGAGAGCGGCGCTGTGCTCTTCGAGATCGCCAAACCGCCGAGT
GAACAATATCCGGAAGGACTGTCCTCGGATGAAACCATGCTGGCGGCTGC
CGAGAAATTGTCACTGGATGACACTGCCGATCCAAATGCCGGACGCTATG
TGCGCTATCAGTTCACACCGGCATTTCTCAACCTCAAAACAGTGGGAGCC
ACTGTGGAATTCACTGTGGGCAGCCAGCCGCTTAATAATTTTCGTATGAT
CGAACGCCACTTCTTCCGCGATCGCCTGCTAAAGACGTTTGACTTTGAGT
TCGGCTTTTGCTTTCCATTTTCGAAGAATACGGTTGAGCACATCTACGAG
TTTCCTAACCTTCCACCCGACCTAGTTGCTGAGATGATATCGAGCCCCTT
TGAGACGCGCTCGGACAGCTTTTACTTTGTGGGAAACCGACTCGTCATGC
ACAACAAAGCCGACTACGCCTACGATGGCGGCAATATAGTCTAGAAACTC
AACTATAATGGAACTGCAACTAGAGCAAAACTAATAACTAAAGAACTAGA
AACTACAGAAGCTGTGAGACAAAATCAATGACTTGTCACACACACACACA
CACGAAACACCCACTCAATGTCAACAATCACACTCACAAACACATCGAAT
CGAATCGAGGAATATTATCACAGCCATTTTAGCCTTAGCACACCAAAGTT
TTACCCACCATTCCTGTTTGATGTATTTAGCATCAAGATATGATCTCCTG
CAAACGGAAACTAACACACAAACACAACAACAACACACTGAAGCACGCGG
ATTGTGTTCATTTATCAATGATTTCCACTTTGACTATATAATTTTAAGTG
CTATGTGATTTCCCTTGATTTATATATGTATTTGTACACACTTATTTAAT
CCTAATAAGTAAGGACACTCCACACACACACCCAACAAGAAACAACAAAT
ACATATATATAAAAAAAAAAAAAAAAAAAA

LD43876.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
unc-119-RA 2687 unc-119-RA 274..2287 1..2014 10070 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7181676..7182327 1252..601 3260 100 Minus
chrX 22417052 chrX 7180611..7181198 2010..1423 2940 100 Minus
chrX 22417052 chrX 7182720..7183208 489..1 2445 100 Minus
chrX 22417052 chrX 7181437..7181609 1425..1253 865 100 Minus
chrX 22417052 chrX 7182497..7182609 601..489 565 100 Minus
chr2R 21145070 chr2R 10601724..10601766 311..353 185 95.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7289745..7290396 1252..601 3260 100 Minus
X 23542271 X 7288676..7289267 2014..1423 2960 100 Minus
X 23542271 X 7290789..7291277 489..1 2445 100 Minus
X 23542271 X 7289506..7289678 1425..1253 865 100 Minus
X 23542271 X 7290566..7290678 601..489 565 100 Minus
2R 25286936 2R 14714433..14714475 311..353 185 95.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7297843..7298494 1252..601 3260 100 Minus
X 23527363 X 7296774..7297365 2014..1423 2960 100 Minus
X 23527363 X 7298887..7299375 489..1 2445 100 Minus
X 23527363 X 7297604..7297776 1425..1253 865 100 Minus
X 23527363 X 7298664..7298776 601..489 565 100 Minus
Blast to na_te.dros performed 2019-03-16 11:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6712..6849 446..312 232 65.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6829 419..311 225 70.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6921 445..312 219 65.4 Minus
roo 9092 roo DM_ROO 9092bp 1054..1166 430..310 200 67.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2396 397..311 181 70 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2785..2822 348..311 154 89.5 Minus
roo 9092 roo DM_ROO 9092bp 1059..1143 399..312 154 67.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6796 400..311 149 67 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6775 354..311 148 81.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2490..2635 445..312 144 60.3 Minus
rover 7318 rover ROVER 7318bp 973..1077 1957..1853 137 63.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2320..2362 354..312 134 79.1 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7950..7988 354..316 132 82.1 Minus
TART-C 11124 TART-C TARTC 11124bp 9394..9432 354..316 132 82.1 Minus
roo 9092 roo DM_ROO 9092bp 1095..1131 348..312 131 83.8 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3264..3334 380..312 124 67.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6417..6597 464..291 123 57.1 Minus

LD43876.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:22:46 Download gff for LD43876.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7180652..7181195 1426..1969 100 <- Minus
chrX 7181437..7181609 1253..1425 100 <- Minus
chrX 7181676..7182326 602..1252 100 <- Minus
chrX 7182497..7182608 490..601 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:38 Download gff for LD43876.complete
Subject Subject Range Query Range Percent Splice Strand
unc-119-RA 1..798 747..1544 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:51:53 Download gff for LD43876.complete
Subject Subject Range Query Range Percent Splice Strand
unc-119-RA 1..798 747..1544 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:39:13 Download gff for LD43876.complete
Subject Subject Range Query Range Percent Splice Strand
unc-119-RA 1..798 747..1544 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:34:12 Download gff for LD43876.complete
Subject Subject Range Query Range Percent Splice Strand
unc-119-RA 1..798 747..1544 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:00 Download gff for LD43876.complete
Subject Subject Range Query Range Percent Splice Strand
unc-119-RA 1..798 747..1544 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:03:23 Download gff for LD43876.complete
Subject Subject Range Query Range Percent Splice Strand
unc-119-RA 28..2037 1..2010 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:51:53 Download gff for LD43876.complete
Subject Subject Range Query Range Percent Splice Strand
unc-119-RA 28..2037 1..2010 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:13 Download gff for LD43876.complete
Subject Subject Range Query Range Percent Splice Strand
unc-119-RA 22..2031 1..2010 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:34:12 Download gff for LD43876.complete
Subject Subject Range Query Range Percent Splice Strand
unc-119-RA 28..2037 1..2010 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:00 Download gff for LD43876.complete
Subject Subject Range Query Range Percent Splice Strand
unc-119-RA 22..2031 1..2010 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:22:46 Download gff for LD43876.complete
Subject Subject Range Query Range Percent Splice Strand
X 7289506..7289678 1253..1425 100 <- Minus
X 7288680..7289264 1426..2010 100 <- Minus
X 7289745..7290395 602..1252 100 <- Minus
X 7290566..7290677 490..601 100 <- Minus
X 7290789..7291277 1..489 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:22:46 Download gff for LD43876.complete
Subject Subject Range Query Range Percent Splice Strand
X 7289506..7289678 1253..1425 100 <- Minus
X 7288680..7289264 1426..2010 100 <- Minus
X 7289745..7290395 602..1252 100 <- Minus
X 7290566..7290677 490..601 100 <- Minus
X 7290789..7291277 1..489 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:22:46 Download gff for LD43876.complete
Subject Subject Range Query Range Percent Splice Strand
X 7289506..7289678 1253..1425 100 <- Minus
X 7288680..7289264 1426..2010 100 <- Minus
X 7289745..7290395 602..1252 100 <- Minus
X 7290566..7290677 490..601 100 <- Minus
X 7290789..7291277 1..489 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:13 Download gff for LD43876.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7184599..7184710 490..601 100 <- Minus
arm_X 7182713..7183297 1426..2010 100 <- Minus
arm_X 7183539..7183711 1253..1425 100 <- Minus
arm_X 7183778..7184428 602..1252 100 <- Minus
arm_X 7184822..7185310 1..489 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:15:36 Download gff for LD43876.complete
Subject Subject Range Query Range Percent Splice Strand
X 7296778..7297362 1426..2010 100 <- Minus
X 7297604..7297776 1253..1425 100 <- Minus
X 7297843..7298493 602..1252 100 <- Minus
X 7298664..7298775 490..601 100 <- Minus
X 7298887..7299375 1..489 100   Minus

LD43876.pep Sequence

Translation from 746 to 1543

> LD43876.pep
MSVVGKQLNPVQSSGAGAVTTSSSAAAGSSSSNSGVEANGGSGGSSGAAA
AGAGASGDAKRPAESSSVTPDEVLHLTKITDDYLCSANANVFEIDFTRFK
IRDLESGAVLFEIAKPPSEQYPEGLSSDETMLAAAEKLSLDDTADPNAGR
YVRYQFTPAFLNLKTVGATVEFTVGSQPLNNFRMIERHFFRDRLLKTFDF
EFGFCFPFSKNTVEHIYEFPNLPPDLVAEMISSPFETRSDSFYFVGNRLV
MHNKADYAYDGGNIV*

LD43876.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21136-PA 269 GF21136-PA 1..269 1..265 1069 77.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17629-PA 266 GG17629-PA 1..266 1..265 1122 87.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24699-PA 259 GH24699-PA 1..259 1..265 1046 81.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
unc-119-PC 265 CG1659-PC 1..265 1..265 1359 100 Plus
unc-119-PA 265 CG1659-PA 1..265 1..265 1359 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14666-PA 270 GI14666-PA 1..267 1..262 1017 79.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14630-PA 270 GL14630-PA 1..270 1..265 1032 78.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14080-PA 270 GA14080-PA 1..270 1..265 1032 78.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17473-PA 265 GM17473-PA 1..265 1..265 1173 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14739-PA 261 GJ14739-PA 1..261 1..265 1041 80 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16385-PA 275 GK16385-PA 1..275 1..265 1035 74.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17531-PA 266 GE17531-PA 1..266 1..265 1133 90.2 Plus

LD43876.hyp Sequence

Translation from 746 to 1543

> LD43876.hyp
MSVVGKQLNPVQSSGAGAVTTSSSAAAGSSSSNSGVEANGGSGGSSGAAA
AGAGASGDAKRPAESSSVTPDEVLHLTKITDDYLCSANANVFEIDFTRFK
IRDLESGAVLFEIAKPPSEQYPEGLSSDETMLAAAEKLSLDDTADPNAGR
YVRYQFTPAFLNLKTVGATVEFTVGSQPLNNFRMIERHFFRDRLLKTFDF
EFGFCFPFSKNTVEHIYEFPNLPPDLVAEMISSPFETRSDSFYFVGNRLV
MHNKADYAYDGGNIV*

LD43876.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
unc-119-PC 265 CG1659-PC 1..265 1..265 1359 100 Plus
unc-119-PA 265 CG1659-PA 1..265 1..265 1359 100 Plus