Clone LD43883 Report

Search the DGRC for LD43883

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:438
Well:83
Vector:pOT2
Associated Gene/TranscriptHpr1-RA
Protein status:LD43883.pep: gold
Preliminary Size:1362
Sequenced Size:2296

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2031 2001-01-01 Release 2 assignment
CG2031 2002-06-12 Blastp of sequenced clone
CG2031 2003-01-01 Sim4 clustering to Release 3
Hpr1 2008-04-29 Release 5.5 accounting
Hpr1 2008-08-15 Release 5.9 accounting
Hpr1 2008-12-18 5.12 accounting

Clone Sequence Records

LD43883.complete Sequence

2296 bp (2296 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122188

> LD43883.complete
TGATGTTTTGATTGAAAAAACAAATTAGTTTATTGTTTTTATCTGTTGTC
GCCAAAAATATTATTTAAATCAATATGAGCACCGCCGTAGAAGTGGCTAA
CACGGCTCCGGAGAAGTTGGCCAACTACTTTGCGCTACAGTCGGCGTTTG
AGAAAGCCCTTGAATTGGCCATCACCGACGGCAAAGTGGAGCTGTTGGTC
AAGGAGTACAATAGATTCCCGGCCAACACCGAGCACGACAAGCGCTTACC
CATGGACCACGCGTTCCGCGTGCTCCTGATGAAGCGGCTGGACGAAGATG
TGAGTCGCATTGGAGAGCTTGTACGCCTCTCCGTGGAAGCCACGCGGGCC
GAGATTGTGTCCAACACCATACCCGTGGTTCTGCTGATCGACACCTTCGA
CGTGGTCACTCTGGACAAGTGCCAGAAGATATTTCAGTTTGTCGAGGATA
TGGTGGAGGTGTGGAAGGAGGAGATCTTCTTTTCCTCATGCAAGAACAAC
ATTCTACGCATGTGCAACGACCTGCTGCGTCGACTTTCGCGCACCCAGAA
CACCGTCTTCTGTGGCCGCATCCAGCTTTTCCTCTCAAAGTTCTTTCCCT
TTTCGGAGCGGTCTGGCCTCAACATCGTCTCCGAATTCAACCTGGACAAC
TTTACGGAGTACGGTCTGGACAGCAAAGACCACGACGAAAGCGACAACAA
GGAGCTGGAGGATACCGCTGAGGACATCCCCCTAAAGATCGACTACGACC
TGTACTGCAAGTTTTGGTCGCTGCAGGACTTTTTCCGAAATCCCAACCAG
TGTTACAATAAGCCGCAGTGGAAGATGTTCCAGATGCACGCTGACAACAT
ACTACAGTCCTTCTCGAGCTTCAAGCTGGAAGACGTGCGCCAAAGTAGCA
ACGAAAATGCGAGCGGTACTGACCAAGCAATGGATGTGGACGAGGAGGCA
GTAGACACCACGGCGGTGTCTTCCGTCATCAAGGCGAATCACTTCTTCGC
CAAGTTTCTAACCAATCCCAAGCTTTTGGCTCTGCAGCTCTCCGACGCTA
ATTTTCGACGTGCTGTTCTGGTGCAGTTTCTAATTCTATTTCAGTACCTG
CAAGTCAGTGTAAAGTTTAAAAGTGATACTCAAACCTTGACTGCAGACCA
GGCGGACTTTATCAAGGAAACAGAGTCGCGTGTTTATAAGTTGCTAGAGG
AGACACCACCGTACGGTAAGCGGTTTTCACGGACAGTGTATCACATGCTG
GCCCGCGAAGAGATGTGGAACAACTGGAAGAACGAAGGCTGCAAGGAATT
CAAGAAGCCCGAGGAACCAACTCTCAGCGAAGAGGACTCGAAGCCAACTC
CCAATAAAAGACCGCGCCGTCCATTGGGCGATGCACTGCGCGATGCTTCC
CGCAGCGGCAAGTTTTATTTGGGAAATGACAACCTAACACGTTTGTGGAA
CTACTCTCCAGATAACTTGCAGGCCTGCAAAAGTGAACAGCGAAACTTCC
TACCGCTGCTGGAGACATATTTAGAAACGCCGCACGAAAAGGTTGATCCC
GCTTTTGAGTGGCGAGCTCTGCGCTTGCTTGCCCGCCAAACACCGCACTT
CTTTACGTCGCTCTCTCAGCCATCGAGCAAGATCTCCGATTATCTTGAGC
AAGTGCGCAAACGTCTCATCCGGGACAAAGAGCCCAAACCTGCTGCCCTT
TTATCGAACAACTCTTCTGAGAACAATTTTGGCCTGTCGGTCAACAACGT
TCATACGGAGGGCGAGCAGGATGCTACGGTCGCCCTTCAGGACGGTGAAC
CAGAGCAGGATCTTGAAGTAGAGGACAACGAACCTGTGGTGGAAGAGGTG
GATGAGGTACCGGCGCACGAGAAACCCCTTATGGTTACCAAAGAGCATAT
CGAAGAGGTGGCGCCCCTTATAGGCGAGCCATGGATGAAGGTGGGAAAGA
AGATTGGCTTCACCAACGATGAACTTCTCTTCTTTCAAATGGAGCATCCT
ACGGCGAACGTGGCCTGCGTTAAGATGCTGACAAACTGGATATCCGATGA
CGACGACGCCACCCTGGAAAACTGGGCGTACATGCTAGAGGGATTGGAGA
TGAATAAGGCCGCCGAAGCGGTGAAGGCGATTATTGAGCGCGAAAAATCT
GGATCCACTGCCGCCTTCTGCCTCCGGTAACGACGATGAGGTGCTCTCTG
ATTAGCATCATCCCCATGCCGATCCCACCCTAGTTATTATAATTTCGTTT
CAATCATAAAACTTCTTTATCACAAGTAAAAAAAAAAAAAAAAAAA

LD43883.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
Hpr1-RA 2509 Hpr1-RA 69..2349 1..2281 11405 100 Plus
CG10999-RC 652 CG10999-RC 614..652 2281..2243 195 100 Minus
CG10999-RA 1724 CG10999-RA 1686..1724 2281..2243 195 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1644441..1645291 2277..1427 4255 100 Minus
chr3R 27901430 chr3R 1646151..1646840 836..147 3435 99.9 Minus
chr3R 27901430 chr3R 1645346..1645650 1426..1122 1525 100 Minus
chr3R 27901430 chr3R 1645707..1645994 1123..836 1440 100 Minus
chr3R 27901430 chr3R 1646902..1647053 152..1 760 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5818790..5819644 2281..1427 4275 100 Minus
3R 32079331 3R 5820504..5821193 836..147 3435 99.9 Minus
3R 32079331 3R 5819699..5820003 1426..1122 1525 100 Minus
3R 32079331 3R 5820060..5820347 1123..836 1440 100 Minus
3R 32079331 3R 5821255..5821406 152..1 760 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5559621..5560475 2281..1427 4275 100 Minus
3R 31820162 3R 5561335..5562024 836..147 3435 99.8 Minus
3R 31820162 3R 5560530..5560834 1426..1122 1525 100 Minus
3R 31820162 3R 5560891..5561178 1123..836 1440 100 Minus
3R 31820162 3R 5562086..5562237 152..1 760 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:21:55 has no hits.

LD43883.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:22:51 Download gff for LD43883.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1644441..1645291 1427..2277 100 <- Minus
chr3R 1645346..1645648 1124..1426 100 <- Minus
chr3R 1645707..1645993 837..1123 100 <- Minus
chr3R 1646151..1646834 153..836 100 <- Minus
chr3R 1646902..1647053 1..152 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:39 Download gff for LD43883.complete
Subject Subject Range Query Range Percent Splice Strand
Hpr1-RA 1..2106 75..2180 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:22:20 Download gff for LD43883.complete
Subject Subject Range Query Range Percent Splice Strand
Hpr1-RA 1..2106 75..2180 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:39:18 Download gff for LD43883.complete
Subject Subject Range Query Range Percent Splice Strand
Hpr1-RA 1..2106 75..2180 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:13:06 Download gff for LD43883.complete
Subject Subject Range Query Range Percent Splice Strand
Hpr1-RA 1..2106 75..2180 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:13 Download gff for LD43883.complete
Subject Subject Range Query Range Percent Splice Strand
Hpr1-RA 1..2106 75..2180 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:48:59 Download gff for LD43883.complete
Subject Subject Range Query Range Percent Splice Strand
Hpr1-RA 22..2298 1..2277 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:22:20 Download gff for LD43883.complete
Subject Subject Range Query Range Percent Splice Strand
Hpr1-RA 22..2298 1..2277 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:18 Download gff for LD43883.complete
Subject Subject Range Query Range Percent Splice Strand
Hpr1-RA 35..2311 1..2277 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:13:06 Download gff for LD43883.complete
Subject Subject Range Query Range Percent Splice Strand
Hpr1-RA 22..2298 1..2277 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:13 Download gff for LD43883.complete
Subject Subject Range Query Range Percent Splice Strand
Hpr1-RA 35..2311 1..2277 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:22:51 Download gff for LD43883.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5818794..5819644 1427..2277 100 <- Minus
3R 5819699..5820001 1124..1426 100 <- Minus
3R 5820060..5820346 837..1123 100 <- Minus
3R 5820504..5821187 153..836 100 <- Minus
3R 5821255..5821406 1..152 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:22:51 Download gff for LD43883.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5818794..5819644 1427..2277 100 <- Minus
3R 5819699..5820001 1124..1426 100 <- Minus
3R 5820060..5820346 837..1123 100 <- Minus
3R 5820504..5821187 153..836 100 <- Minus
3R 5821255..5821406 1..152 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:22:51 Download gff for LD43883.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5818794..5819644 1427..2277 100 <- Minus
3R 5819699..5820001 1124..1426 100 <- Minus
3R 5820060..5820346 837..1123 100 <- Minus
3R 5820504..5821187 153..836 100 <- Minus
3R 5821255..5821406 1..152 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:18 Download gff for LD43883.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1644516..1645366 1427..2277 100 <- Minus
arm_3R 1645421..1645723 1124..1426 100 <- Minus
arm_3R 1645782..1646068 837..1123 100 <- Minus
arm_3R 1646226..1646909 153..836 100 <- Minus
arm_3R 1646977..1647128 1..152 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:45:53 Download gff for LD43883.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5559625..5560475 1427..2277 100 <- Minus
3R 5560530..5560832 1124..1426 100 <- Minus
3R 5560891..5561177 837..1123 100 <- Minus
3R 5561335..5562018 153..836 100 <- Minus
3R 5562086..5562237 1..152 100   Minus

LD43883.pep Sequence

Translation from 74 to 2179

> LD43883.pep
MSTAVEVANTAPEKLANYFALQSAFEKALELAITDGKVELLVKEYNRFPA
NTEHDKRLPMDHAFRVLLMKRLDEDVSRIGELVRLSVEATRAEIVSNTIP
VVLLIDTFDVVTLDKCQKIFQFVEDMVEVWKEEIFFSSCKNNILRMCNDL
LRRLSRTQNTVFCGRIQLFLSKFFPFSERSGLNIVSEFNLDNFTEYGLDS
KDHDESDNKELEDTAEDIPLKIDYDLYCKFWSLQDFFRNPNQCYNKPQWK
MFQMHADNILQSFSSFKLEDVRQSSNENASGTDQAMDVDEEAVDTTAVSS
VIKANHFFAKFLTNPKLLALQLSDANFRRAVLVQFLILFQYLQVSVKFKS
DTQTLTADQADFIKETESRVYKLLEETPPYGKRFSRTVYHMLAREEMWNN
WKNEGCKEFKKPEEPTLSEEDSKPTPNKRPRRPLGDALRDASRSGKFYLG
NDNLTRLWNYSPDNLQACKSEQRNFLPLLETYLETPHEKVDPAFEWRALR
LLARQTPHFFTSLSQPSSKISDYLEQVRKRLIRDKEPKPAALLSNNSSEN
NFGLSVNNVHTEGEQDATVALQDGEPEQDLEVEDNEPVVEEVDEVPAHEK
PLMVTKEHIEEVAPLIGEPWMKVGKKIGFTNDELLFFQMEHPTANVACVK
MLTNWISDDDDATLENWAYMLEGLEMNKAAEAVKAIIEREKSGSTAAFCL
R*

LD43883.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18644-PA 713 GF18644-PA 1..693 1..696 3104 83.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10810-PA 713 GG10810-PA 1..697 1..697 3504 93.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17514-PA 717 GH17514-PA 1..694 1..691 2928 79.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
Hpr1-PA 701 CG2031-PA 1..701 1..701 3650 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10383-PA 730 GI10383-PA 1..708 1..695 2816 75.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23216-PA 718 GL23216-PA 1..697 1..696 3017 82.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15194-PA 718 GA15194-PA 1..697 1..696 3017 82.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10588-PA 701 GM10588-PA 1..701 1..701 3675 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19579-PA 701 GD19579-PA 1..701 1..701 3677 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22844-PA 720 GJ22844-PA 1..700 1..695 2853 77.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22628-PA 710 GK22628-PA 4..692 3..691 2648 74.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24134-PA 713 GE24134-PA 1..697 1..697 3496 94.4 Plus

LD43883.hyp Sequence

Translation from 74 to 2179

> LD43883.hyp
MSTAVEVANTAPEKLANYFALQSAFEKALELAITDGKVELLVKEYNRFPA
NTEHDKRLPMDHAFRVLLMKRLDEDVSRIGELVRLSVEATRAEIVSNTIP
VVLLIDTFDVVTLDKCQKIFQFVEDMVEVWKEEIFFSSCKNNILRMCNDL
LRRLSRTQNTVFCGRIQLFLSKFFPFSERSGLNIVSEFNLDNFTEYGLDS
KDHDESDNKELEDTAEDIPLKIDYDLYCKFWSLQDFFRNPNQCYNKPQWK
MFQMHADNILQSFSSFKLEDVRQSSNENASGTDQAMDVDEEAVDTTAVSS
VIKANHFFAKFLTNPKLLALQLSDANFRRAVLVQFLILFQYLQVSVKFKS
DTQTLTADQADFIKETESRVYKLLEETPPYGKRFSRTVYHMLAREEMWNN
WKNEGCKEFKKPEEPTLSEEDSKPTPNKRPRRPLGDALRDASRSGKFYLG
NDNLTRLWNYSPDNLQACKSEQRNFLPLLETYLETPHEKVDPAFEWRALR
LLARQTPHFFTSLSQPSSKISDYLEQVRKRLIRDKEPKPAALLSNNSSEN
NFGLSVNNVHTEGEQDATVALQDGEPEQDLEVEDNEPVVEEVDEVPAHEK
PLMVTKEHIEEVAPLIGEPWMKVGKKIGFTNDELLFFQMEHPTANVACVK
MLTNWISDDDDATLENWAYMLEGLEMNKAAEAVKAIIEREKSGSTAAFCL
R*

LD43883.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
Hpr1-PA 701 CG2031-PA 1..701 1..701 3650 100 Plus