BDGP Sequence Production Resources |
Search the DGRC for LD43943
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 439 |
Well: | 43 |
Vector: | pOT2 |
Associated Gene/Transcript | Syx1A-RA |
Protein status: | LD43943.pep: gold |
Preliminary Size: | 2272 |
Sequenced Size: | 2383 |
Gene | Date | Evidence |
---|---|---|
CG18615 | 2001-01-01 | Release 2 assignment |
CG10716 | 2001-01-01 | Release 2 assignment |
CG31136 | 2001-10-10 | Blastp of sequenced clone |
CG31136 | 2003-01-01 | Sim4 clustering to Release 3 |
Syx1A | 2008-04-29 | Release 5.5 accounting |
Syx1A | 2008-08-15 | Release 5.9 accounting |
Syx1A | 2008-12-18 | 5.12 accounting |
2383 bp (2383 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061472
> LD43943.complete CCCGCGCGAGGTGCTGTGTTTCGTTTCGGCTCGCATCGAAATCACACAAA AAAAAACTCTTGGCCGCCGGGAAAATCGCGAAACAATATTTGGTTTTTTG TGAAAAAAATCAAAAAAATATTGTCAACACATTTGCCTCAGATAAATACA AAGAAATGTGCATGTGAAACGATTGGTGACAACAACAAATCGTGGAACCC AGACAACCAGTGTGCGAGAGCGTGATAGGTGGTCGTGCGTCCCTCTCAAA CACACACCCTGAATCGGCGCCGACGACGCGTACGCAACAAACGAAAATAA AACGCAAGCGAAAAGGAGAGAGAAAGAACAAATAACGCCCACCGTAACAC CCCCCGCGAATAAGAAGAAGCAAAGTAGATAAAGCAGAGAAAGACGAAGA AGCAGCAGCAAAAGCAGACGGCAGAATTGGAGCTTTGCGCAGAAATCGAT TTTTTGCCCATTTTAAGAGATTTTCGGTAGCCTCTCCCACTGCCGAAAAT CGTTTATTGCCACTGCTGCGTGCGTGTTTGTGTATGTGTGTGCGTGTGCC AGTGCGAAAGTGAAACAAACAAATTCGCCGAGTAAAAGATTAATATTATA TGGTACCAGTGTGAGTCACAAATAACAAGAGAGAAAAAAACAGAAAAAAG AAAAATTAATTCAGCAGCAGCTTTAGCTTTTTAGCTGCTGGCATTGAAGA GGTGCTCTGCCGCAGTCGACGTCTCTGCCGCCGCCCGCAACACGAGCTCT CTTTGCCTCTCTCTCCGTCTCTCTTGTGAGCGAAATAACACCACACCAAA CGACACACACACGAAAAAAGCATAATAATATTAACCAAAACGCCAGCCAA AGTGCCAGTTAAGTTATAATTATACACTAAAAGTAAACCGAGCAAAGAGA GAGCTGCCAGCCAAAAGCGGAAAATCAATAAAAGGTCTCTCGCAAAAGTG GAAAAACGTGCAAACAAGTTAAAAGCAAGGCTGCAAAAAAAGAAAAAGGA AAAACTCCGCGCGCGTTTACACGTGTGGTTTATGTGTGTGTGCGTGTTTA ACGTTTAACTGCTAATCGCAAAAACGCAATCTGCGAAGACCGCGTAACAA AGGCTTACGTAAAGCTTGGCCAAGGGAAAGAGCCAAATAACAACGAAGCA TAAAAAACAATATTTAAAAAAATCCAACAAATTTTGAAAACTGCACCGTA AACAAGGATAGTCCCAGAAATTCGAAACTCCCCAATTATCAAATCGAGAA TAATCTTCTCGCACACCCTTCAAAAACCAGGATAATACCCCGACACAAAG ATGACTAAAGACAGATTAGCCGCTCTCCATGCCGCCCAATCCGATGACGA GGAGGAGACGGAGGTGGCCGTCAATGTGGATGGCCATGATTCCTACATGG ACGACTTCTTCGCCCAGGTGGAGGAGATCCGCGGGATGATCGACAAGGTG CAGGATAACGTCGAGGAGGTAAAGAAGAAGCACTCGGCCATCCTGTCCGC CCCACAAACGGACGAGAAGACCAAGCAAGAGCTGGAGGATCTGATGGCCG ACATCAAGAAGAATGCCAATCGCGTTCGCGGCAAGCTCAAGGGCATCGAG CAGAACATCGAGCAGGAAGAGCAGCAGAATAAGTCGTCGGCGGATCTGAG AATTCGGAAGACGCAGCACTCGACGTTGTCACGGAAATTCGTCGAAGTGA TGACCGAGTACAATCGCACGCAGACCGACTACCGAGAGCGCTGCAAGGGA AGGATACAGCGTCAACTGGAGATTACCGGACGACCGACCAACGACGATGA GCTGGAGAAGATGCTGGAGGAGGGCAACTCGTCTGTGTTCACGCAGGGCA TCATCATGGAGACGCAGCAGGCCAAACAGACGCTGGCGGACATTGAGGCC CGCCACCAGGACATCATGAAGCTGGAGACATCGATCAAGGAGCTGCACGA CATGTTCATGGACATGGCCATGCTGGTGGAGTCGCAGGGCGAGATGATCG ATCGCATTGAGTACCATGTGGAGCACGCTATGGACTATGTGCAGACGGCA ACTCAGGACACCAAGAAGGCGCTCAAGTACCAGAGTAAAGCCCGACGAAA GAAGATCATGATACTGATCTGCCTCACTGTGCTGGGCATCTTAGCGGCCT CATATGTTAGCAGTTATTTCATGTAAATCTCGAATGCAATTACTTACACG CCACATTCACTCCACACACACACCTCTCCACACACACACACATTATATAT CTCATCCAGACCCGATCTATATACATAGGATGTTGCGCAACCCACCCAGA GAAATTGCAGAAGACAAAATCGAAACTTAAACTGTAAGAGACCGCAACCA GTGAACCCCCGATACAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Syx1A-RA | 2365 | Syx1A-RA | 1..2365 | 1..2365 | 11825 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 19926699..19929063 | 2365..1 | 11535 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 24103363..24105743 | 2381..1 | 11890 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 23844194..23846574 | 2381..1 | 11890 | 99.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
412 | 7567 | 412 412 7567bp | 5867..5967 | 1097..1194 | 145 | 65.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 19926699..19929063 | 1..2365 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx1A-RA | 1..876 | 1301..2176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx1A-RA | 1..876 | 1301..2176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx1A-RA | 1..876 | 1301..2176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx1A-RA | 1..876 | 1301..2176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx1A-RA | 1..876 | 1301..2176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx1A-RA | 1..2365 | 1..2365 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx1A-RA | 1..2365 | 1..2365 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx1A-RA | 21..2385 | 1..2365 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx1A-RA | 1..2365 | 1..2365 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx1A-RA | 21..2385 | 1..2365 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24103379..24105743 | 1..2365 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24103379..24105743 | 1..2365 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24103379..24105743 | 1..2365 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 19929101..19931465 | 1..2365 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23844210..23846574 | 1..2365 | 100 | Minus |
Translation from 1300 to 2175
> LD43943.hyp MTKDRLAALHAAQSDDEEETEVAVNVDGHDSYMDDFFAQVEEIRGMIDKV QDNVEEVKKKHSAILSAPQTDEKTKQELEDLMADIKKNANRVRGKLKGIE QNIEQEEQQNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKG RIQRQLEITGRPTNDDELEKMLEEGNSSVFTQGIIMETQQAKQTLADIEA RHQDIMKLETSIKELHDMFMDMAMLVESQGEMIDRIEYHVEHAMDYVQTA TQDTKKALKYQSKARRKKIMILICLTVLGILAASYVSSYFM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Syx1A-PA | 291 | CG31136-PA | 1..291 | 1..291 | 1462 | 100 | Plus |
Syx1A-PB | 296 | CG31136-PB | 1..291 | 1..291 | 1458 | 99.7 | Plus |
Syx4-PA | 333 | CG2715-PA | 65..322 | 14..278 | 267 | 23.4 | Plus |
Syx4-PB | 257 | CG2715-PB | 4..246 | 29..278 | 265 | 24 | Plus |
Syx7-PB | 282 | CG5081-PB | 22..267 | 35..283 | 161 | 23.1 | Plus |
Translation from 1300 to 2175
> LD43943.pep MTKDRLAALHAAQSDDEEETEVAVNVDGHDSYMDDFFAQVEEIRGMIDKV QDNVEEVKKKHSAILSAPQTDEKTKQELEDLMADIKKNANRVRGKLKGIE QNIEQEEQQNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKG RIQRQLEITGRPTNDDELEKMLEEGNSSVFTQGIIMETQQAKQTLADIEA RHQDIMKLETSIKELHDMFMDMAMLVESQGEMIDRIEYHVEHAMDYVQTA TQDTKKALKYQSKARRKKIMILICLTVLGILAASYVSSYFM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23231-PA | 291 | GF23231-PA | 1..291 | 1..291 | 1538 | 100 | Plus |
Dana\GF22480-PA | 339 | GF22480-PA | 75..322 | 16..272 | 226 | 24.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18606-PA | 332 | GG18606-PA | 79..313 | 29..270 | 219 | 25.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12274-PA | 318 | GH12274-PA | 69..299 | 33..270 | 200 | 23.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Syx1A-PC | 291 | CG31136-PC | 1..291 | 1..291 | 1462 | 100 | Plus |
Syx1A-PA | 291 | CG31136-PA | 1..291 | 1..291 | 1462 | 100 | Plus |
Syx1A-PB | 296 | CG31136-PB | 1..291 | 1..291 | 1458 | 99.7 | Plus |
Syx4-PA | 333 | CG2715-PA | 65..322 | 14..278 | 267 | 23.4 | Plus |
Syx4-PB | 257 | CG2715-PB | 4..246 | 29..278 | 265 | 24 | Plus |
Syx7-PB | 282 | CG5081-PB | 22..267 | 35..283 | 161 | 23.1 | Plus |
Syx7-PA | 282 | CG5081-PA | 22..267 | 35..283 | 161 | 23.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23434-PA | 291 | GI23434-PA | 1..291 | 1..291 | 1386 | 94.2 | Plus |
Dmoj\GI10970-PA | 320 | GI10970-PA | 71..320 | 33..290 | 235 | 25.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24148-PA | 291 | GL24148-PA | 1..291 | 1..291 | 1522 | 98.6 | Plus |
Dper\GL19805-PA | 336 | GL19805-PA | 83..319 | 29..272 | 185 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16036-PA | 291 | GA16036-PA | 1..291 | 1..291 | 1522 | 98.6 | Plus |
Dpse\GA15445-PA | 338 | GA15445-PA | 85..321 | 29..272 | 186 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18855-PA | 333 | GM18855-PA | 80..314 | 29..270 | 212 | 24.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Syx4-PA | 333 | GD16354-PA | 80..314 | 29..270 | 212 | 24.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18528-PA | 315 | GJ18528-PA | 66..315 | 33..286 | 226 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25401-PA | 316 | GK25401-PA | 57..316 | 11..281 | 206 | 25.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Syx4-PA | 332 | GE16921-PA | 79..313 | 29..270 | 221 | 24.8 | Plus |