Clone LD43943 Report

Search the DGRC for LD43943

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:439
Well:43
Vector:pOT2
Associated Gene/TranscriptSyx1A-RA
Protein status:LD43943.pep: gold
Preliminary Size:2272
Sequenced Size:2383

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18615 2001-01-01 Release 2 assignment
CG10716 2001-01-01 Release 2 assignment
CG31136 2001-10-10 Blastp of sequenced clone
CG31136 2003-01-01 Sim4 clustering to Release 3
Syx1A 2008-04-29 Release 5.5 accounting
Syx1A 2008-08-15 Release 5.9 accounting
Syx1A 2008-12-18 5.12 accounting

Clone Sequence Records

LD43943.complete Sequence

2383 bp (2383 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061472

> LD43943.complete
CCCGCGCGAGGTGCTGTGTTTCGTTTCGGCTCGCATCGAAATCACACAAA
AAAAAACTCTTGGCCGCCGGGAAAATCGCGAAACAATATTTGGTTTTTTG
TGAAAAAAATCAAAAAAATATTGTCAACACATTTGCCTCAGATAAATACA
AAGAAATGTGCATGTGAAACGATTGGTGACAACAACAAATCGTGGAACCC
AGACAACCAGTGTGCGAGAGCGTGATAGGTGGTCGTGCGTCCCTCTCAAA
CACACACCCTGAATCGGCGCCGACGACGCGTACGCAACAAACGAAAATAA
AACGCAAGCGAAAAGGAGAGAGAAAGAACAAATAACGCCCACCGTAACAC
CCCCCGCGAATAAGAAGAAGCAAAGTAGATAAAGCAGAGAAAGACGAAGA
AGCAGCAGCAAAAGCAGACGGCAGAATTGGAGCTTTGCGCAGAAATCGAT
TTTTTGCCCATTTTAAGAGATTTTCGGTAGCCTCTCCCACTGCCGAAAAT
CGTTTATTGCCACTGCTGCGTGCGTGTTTGTGTATGTGTGTGCGTGTGCC
AGTGCGAAAGTGAAACAAACAAATTCGCCGAGTAAAAGATTAATATTATA
TGGTACCAGTGTGAGTCACAAATAACAAGAGAGAAAAAAACAGAAAAAAG
AAAAATTAATTCAGCAGCAGCTTTAGCTTTTTAGCTGCTGGCATTGAAGA
GGTGCTCTGCCGCAGTCGACGTCTCTGCCGCCGCCCGCAACACGAGCTCT
CTTTGCCTCTCTCTCCGTCTCTCTTGTGAGCGAAATAACACCACACCAAA
CGACACACACACGAAAAAAGCATAATAATATTAACCAAAACGCCAGCCAA
AGTGCCAGTTAAGTTATAATTATACACTAAAAGTAAACCGAGCAAAGAGA
GAGCTGCCAGCCAAAAGCGGAAAATCAATAAAAGGTCTCTCGCAAAAGTG
GAAAAACGTGCAAACAAGTTAAAAGCAAGGCTGCAAAAAAAGAAAAAGGA
AAAACTCCGCGCGCGTTTACACGTGTGGTTTATGTGTGTGTGCGTGTTTA
ACGTTTAACTGCTAATCGCAAAAACGCAATCTGCGAAGACCGCGTAACAA
AGGCTTACGTAAAGCTTGGCCAAGGGAAAGAGCCAAATAACAACGAAGCA
TAAAAAACAATATTTAAAAAAATCCAACAAATTTTGAAAACTGCACCGTA
AACAAGGATAGTCCCAGAAATTCGAAACTCCCCAATTATCAAATCGAGAA
TAATCTTCTCGCACACCCTTCAAAAACCAGGATAATACCCCGACACAAAG
ATGACTAAAGACAGATTAGCCGCTCTCCATGCCGCCCAATCCGATGACGA
GGAGGAGACGGAGGTGGCCGTCAATGTGGATGGCCATGATTCCTACATGG
ACGACTTCTTCGCCCAGGTGGAGGAGATCCGCGGGATGATCGACAAGGTG
CAGGATAACGTCGAGGAGGTAAAGAAGAAGCACTCGGCCATCCTGTCCGC
CCCACAAACGGACGAGAAGACCAAGCAAGAGCTGGAGGATCTGATGGCCG
ACATCAAGAAGAATGCCAATCGCGTTCGCGGCAAGCTCAAGGGCATCGAG
CAGAACATCGAGCAGGAAGAGCAGCAGAATAAGTCGTCGGCGGATCTGAG
AATTCGGAAGACGCAGCACTCGACGTTGTCACGGAAATTCGTCGAAGTGA
TGACCGAGTACAATCGCACGCAGACCGACTACCGAGAGCGCTGCAAGGGA
AGGATACAGCGTCAACTGGAGATTACCGGACGACCGACCAACGACGATGA
GCTGGAGAAGATGCTGGAGGAGGGCAACTCGTCTGTGTTCACGCAGGGCA
TCATCATGGAGACGCAGCAGGCCAAACAGACGCTGGCGGACATTGAGGCC
CGCCACCAGGACATCATGAAGCTGGAGACATCGATCAAGGAGCTGCACGA
CATGTTCATGGACATGGCCATGCTGGTGGAGTCGCAGGGCGAGATGATCG
ATCGCATTGAGTACCATGTGGAGCACGCTATGGACTATGTGCAGACGGCA
ACTCAGGACACCAAGAAGGCGCTCAAGTACCAGAGTAAAGCCCGACGAAA
GAAGATCATGATACTGATCTGCCTCACTGTGCTGGGCATCTTAGCGGCCT
CATATGTTAGCAGTTATTTCATGTAAATCTCGAATGCAATTACTTACACG
CCACATTCACTCCACACACACACCTCTCCACACACACACACATTATATAT
CTCATCCAGACCCGATCTATATACATAGGATGTTGCGCAACCCACCCAGA
GAAATTGCAGAAGACAAAATCGAAACTTAAACTGTAAGAGACCGCAACCA
GTGAACCCCCGATACAAAAAAAAAAAAAAAAAA

LD43943.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Syx1A-RA 2365 Syx1A-RA 1..2365 1..2365 11825 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19926699..19929063 2365..1 11535 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24103363..24105743 2381..1 11890 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23844194..23846574 2381..1 11890 99.9 Minus
Blast to na_te.dros performed 2019-03-15 19:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 5867..5967 1097..1194 145 65.7 Plus

LD43943.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:49:25 Download gff for LD43943.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19926699..19929063 1..2365 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:43 Download gff for LD43943.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1..876 1301..2176 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:53:29 Download gff for LD43943.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1..876 1301..2176 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:02:16 Download gff for LD43943.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1..876 1301..2176 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:22:28 Download gff for LD43943.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1..876 1301..2176 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:10 Download gff for LD43943.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1..876 1301..2176 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:38:35 Download gff for LD43943.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1..2365 1..2365 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:53:29 Download gff for LD43943.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1..2365 1..2365 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:16 Download gff for LD43943.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 21..2385 1..2365 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:22:29 Download gff for LD43943.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1..2365 1..2365 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:10 Download gff for LD43943.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 21..2385 1..2365 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:49:25 Download gff for LD43943.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24103379..24105743 1..2365 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:49:25 Download gff for LD43943.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24103379..24105743 1..2365 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:49:25 Download gff for LD43943.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24103379..24105743 1..2365 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:16 Download gff for LD43943.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19929101..19931465 1..2365 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:59:35 Download gff for LD43943.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23844210..23846574 1..2365 100   Minus

LD43943.hyp Sequence

Translation from 1300 to 2175

> LD43943.hyp
MTKDRLAALHAAQSDDEEETEVAVNVDGHDSYMDDFFAQVEEIRGMIDKV
QDNVEEVKKKHSAILSAPQTDEKTKQELEDLMADIKKNANRVRGKLKGIE
QNIEQEEQQNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKG
RIQRQLEITGRPTNDDELEKMLEEGNSSVFTQGIIMETQQAKQTLADIEA
RHQDIMKLETSIKELHDMFMDMAMLVESQGEMIDRIEYHVEHAMDYVQTA
TQDTKKALKYQSKARRKKIMILICLTVLGILAASYVSSYFM*

LD43943.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
Syx1A-PA 291 CG31136-PA 1..291 1..291 1462 100 Plus
Syx1A-PB 296 CG31136-PB 1..291 1..291 1458 99.7 Plus
Syx4-PA 333 CG2715-PA 65..322 14..278 267 23.4 Plus
Syx4-PB 257 CG2715-PB 4..246 29..278 265 24 Plus
Syx7-PB 282 CG5081-PB 22..267 35..283 161 23.1 Plus

LD43943.pep Sequence

Translation from 1300 to 2175

> LD43943.pep
MTKDRLAALHAAQSDDEEETEVAVNVDGHDSYMDDFFAQVEEIRGMIDKV
QDNVEEVKKKHSAILSAPQTDEKTKQELEDLMADIKKNANRVRGKLKGIE
QNIEQEEQQNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKG
RIQRQLEITGRPTNDDELEKMLEEGNSSVFTQGIIMETQQAKQTLADIEA
RHQDIMKLETSIKELHDMFMDMAMLVESQGEMIDRIEYHVEHAMDYVQTA
TQDTKKALKYQSKARRKKIMILICLTVLGILAASYVSSYFM*

LD43943.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23231-PA 291 GF23231-PA 1..291 1..291 1538 100 Plus
Dana\GF22480-PA 339 GF22480-PA 75..322 16..272 226 24.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18606-PA 332 GG18606-PA 79..313 29..270 219 25.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12274-PA 318 GH12274-PA 69..299 33..270 200 23.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
Syx1A-PC 291 CG31136-PC 1..291 1..291 1462 100 Plus
Syx1A-PA 291 CG31136-PA 1..291 1..291 1462 100 Plus
Syx1A-PB 296 CG31136-PB 1..291 1..291 1458 99.7 Plus
Syx4-PA 333 CG2715-PA 65..322 14..278 267 23.4 Plus
Syx4-PB 257 CG2715-PB 4..246 29..278 265 24 Plus
Syx7-PB 282 CG5081-PB 22..267 35..283 161 23.1 Plus
Syx7-PA 282 CG5081-PA 22..267 35..283 161 23.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23434-PA 291 GI23434-PA 1..291 1..291 1386 94.2 Plus
Dmoj\GI10970-PA 320 GI10970-PA 71..320 33..290 235 25.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24148-PA 291 GL24148-PA 1..291 1..291 1522 98.6 Plus
Dper\GL19805-PA 336 GL19805-PA 83..319 29..272 185 25 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16036-PA 291 GA16036-PA 1..291 1..291 1522 98.6 Plus
Dpse\GA15445-PA 338 GA15445-PA 85..321 29..272 186 25 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18855-PA 333 GM18855-PA 80..314 29..270 212 24.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Syx4-PA 333 GD16354-PA 80..314 29..270 212 24.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18528-PA 315 GJ18528-PA 66..315 33..286 226 24.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25401-PA 316 GK25401-PA 57..316 11..281 206 25.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Syx4-PA 332 GE16921-PA 79..313 29..270 221 24.8 Plus