Clone LD44003 Report

Search the DGRC for LD44003

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:440
Well:3
Vector:pOT2
Associated Gene/TranscriptCG9467-RA
Protein status:LD44003.pep: gold
Sequenced Size:3185

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9467 2003-01-01 Sim4 clustering to Release 3
CG9467 2004-10-02 Blastp of sequenced clone
CG9467 2008-04-29 Release 5.5 accounting
CG9467 2008-08-15 Release 5.9 accounting
CG9467 2008-12-18 5.12 accounting

Clone Sequence Records

LD44003.complete Sequence

3185 bp (3185 high quality bases) assembled on 2004-10-02

GenBank Submission: BT016086

> LD44003.complete
AATTTGCCCATCCCTAGTTTCTACAGTGCAGTGCAACAAATAATAAATAA
ATAAATAGCCTGGCACAAAGAGTTAATCGAATAAATTGCACCCCGCAGCG
CACGTCAAGTGGGTTGGGTACCGAAATCGCGAGTTATCTGCTCCGCTGAC
GCCGCTGCCACTGCTCCGCCATATCAGTTGCTGATTGGAGCGCTGGGAGC
ACGGAAGCCACACAAATAGAGGCGCATTTAGAGCAATCCCCACCGTCCGC
TGCTGCGGCAGCCCGCGGGTCATCGGATTGCCATGTCCCACTTCACGCAT
GCCTCCAGCAGCGACCTGGTCAACCTCAATGTGGGTGGTCAGCGCTTTTC
CACGTCGCGGCAAACGCTTACGTGGATCCCGGACACCTTCTTCACGGCTC
TTCTCAGCGGACGCATCTCGAGTCTCAGAGACGAGCACAATGCCATCTTT
ATTGATCGCGATCCGACGCTCTTCTCGATCATACTTAACTACTTAAGGAC
CAAGGACATCGACATCAAGAACTGCGAAATACGCGCTCTGCGCCATGAGG
CCGAGTACTATGGCATCACGCCGCTGACCAAGCGCCTGGCCCTCTGCGAA
GACCTTAACCACTCGTCCTGCGGTGATTTGCTGTTCTACGGATTTCTGGC
GGCGCCGCCCATGCCGTCAAACGAAGCTGTGGCTGCTACTAGCGTTGACG
AGTCATTGCCCTCCACTTCGGCCAGTGCGATTGGCAGTCGTCCTGGGTCC
ATGGTGCGCGTTCCCGAACCCTCACGCTCCTCACACTCGCGCAATTCATC
ATGGGATCTGCGCCTTGGTCGCACAGGTAGCACTGGCAATGGTGCCAATC
CCCCAGCTCCCATGTTGCACTCACGTAATCCCTCGATTGACTTTATGCGC
CACTCTCGGAACTCCTCGGCCGATCTGAACAAAGTCTTTCGAAACGAAGT
TGGCCTGGTATTCAGTCCCACGCAGAACTCAAACTGGGTGGACCCGTTGC
GAGTGCAAATCATTAAGGCGCACCAAAATTGGATAGCAGTGGCTTACGCA
CACTTTGTGACTTGCTACCGGGTGAAAGACTCCAACGGATGGCAGCAGGT
GTTCACATCGCCCCACATCGACGCCACTATCGAAAGAATCGCCATCAACT
CAAAGGTGAATACTTCCGCAGCAGAGCCACTGCCCAGCAAGATGGTGGCC
ATTTCTTACGGCAGTCAGATAAGATTGTGGAGCATTCAGGAGGGCGGCCA
GAAAACGGATGTGGGCACGTTTAATTTAAATGTGCGAGTGGAGTACCTGT
TCTTTATCGGCAGTCAGCTGGTGGCCCTGTCATCTTCCGGCAAGATCGGC
GTCTGGCATGCGATGACGCAGCACTGGCAGATTCAGGACCTAGTGCCCGT
GCTCTCATTCGATTCCGCAGGCTCTTTTTTGCTGCTGGGCTGCAACAACG
GCTCCATTTACTACATAGACATGCAGAAGTTCCCGCTCCGGATAAAGGAC
AATGATTTACTGGTTACCGAGCTCTACAAAGATGTCACACTAGACCCTAT
CACGGCCATCTCGGTCTACCTTACCCCAAAAACCTCGAGCATAAGTGGCA
ATTGGATTGAAATTGCCTATGGCACAAAGTCGGGAGCGGTTCGAATCATT
GTCCAGCATCCGGAGACAGCTGGCCATGGACCACACCTGTTCGAGACCTT
CTTTGTGCACCAAAGCCCCGTAACGAAGGTGATGCTGTCGGAGAAATACC
TCGTCTCCGTGTGCAGCGAATACCACCACGTGCGAACATGGCGTCTGACC
CGCTTCCGGGGCATGCTCTCCACCCAGCCGGGATCCACGCCGGAAGCATC
GTTCAAAATCGTGTCGCTGGAAGCTACCGATACGAGCTACAGCTATGCGG
CTGGAAATGATTTTGGACCTTACGGTGACTACGACGACATGATATTTGTG
CAAAAGGTGGTGCCCGAGACGGATCAGCTGTACGTACGCTTGGCCTCCAA
CGGTGATCGGGTGTGCGTCATTAGATCCGTAGATAGCTCCACAATTTCGG
CCTTCTGTGTGCTCGAGTGCGAGGTATCGTCCCGGTTCATACTCACCGGT
CACTGCAACGGCGCTATTCAAATGTGGGACCTAACCACTGCACTGGCGCT
GCTCTCCAAGGATGAGCCGCAGCAGAAAATCAATGGCGGACCCGACACCA
ATGAGCTTCTCCGCCTACTTGACCAGTGTGAAATCAGCAATTCATCATGC
ACAACACCTTGTATGTCACCGTGTCTATCAGCTATGGGCAACGGCTCTGG
AATGGCCTCCTCCATAGCCCGCATGAAAGCCAGCAACATAGCCCTGCTAA
ATCGGGAACCAGCAATGGCAATGGCCGTCCAAGCCGTCCAGCCGCCCGCT
CAGGTCCAACCTGCTCTTCCAGAGGCTGTGGCGCCGGCAGCTGCTATCCC
GATGGCTGACGACAACAACGAATGAGACGTGGAAGCGGCTGCTTGATTGG
CGCTTGTCGGGCGCGTTTCATCGTTTACATTTCACAGGTATAGCTTAATC
TTCGACTACCAGTTTATATTCCTGCAGTTCGTGGTGTGCGCCCTCATCTA
CGTCTGGGTGACGCGACTCACCCGCGGTCCAGCCACTGGGCCGTGATGAA
CTGCCAGCAGGCATTTACCCAATCAATTAATCTCCATTATATGTGCTCGA
TGTGTTTGCAAATGCAATGTGTATCCCGTAAACCCATTTTTTGTGCTCCT
CCAAACTTGGATCGTACAGTTAGTAATTTAAAAAAAAAACGTCTGTCTTT
GTTCTAGTTAAAGTTATGAAAATTAGTTAAAACCATGTAAACCAGAGTAT
AAGACTTCTGCAACCGATCATCTATAATTAGCACAACTCTCCTAAAGGGT
GCTCCATCAGGACAGATACGAAATCGTTCGGCTTGGATAAGATTGGTTGC
CTTAAGCAAAGAAAGTTCATTAAACAGCCAATCAGTTGATTGTCAACCTT
GAAGATGATTACTTGTGATTAAAATCGATAGAGCGACTGCTTCAAATTCG
AATCTGTCCTGTTGCATGCAATGCCACACATGAATATAATGATACGCCTT
GTTGCAACCAGTAAACAGCTATACATATTCAATATAAATAAAGATAATTA
TACACAAAGAGATATCAAAAAAAAAAAAAAAAAAA

LD44003.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9467-RA 3264 CG9467-RA 40..3209 1..3170 15850 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5623605..5626427 3166..344 14115 100 Minus
chr3R 27901430 chr3R 5626505..5626848 344..1 1720 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9797765..9800591 3170..344 14135 100 Minus
3R 32079331 3R 9800669..9801012 344..1 1720 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9538596..9541422 3170..344 14135 100 Minus
3R 31820162 3R 9541500..9541843 344..1 1720 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:49:31 has no hits.

LD44003.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:50:36 Download gff for LD44003.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5626505..5626848 1..344 100   Minus
chr3R 5623605..5626426 345..3166 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:45 Download gff for LD44003.complete
Subject Subject Range Query Range Percent Splice Strand
CG9467-RA 1..2193 283..2475 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:31:46 Download gff for LD44003.complete
Subject Subject Range Query Range Percent Splice Strand
CG9467-RA 1..2193 283..2475 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:02:23 Download gff for LD44003.complete
Subject Subject Range Query Range Percent Splice Strand
CG9467-RA 1..2193 283..2475 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:15:36 Download gff for LD44003.complete
Subject Subject Range Query Range Percent Splice Strand
CG9467-RA 1..2193 283..2475 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:20 Download gff for LD44003.complete
Subject Subject Range Query Range Percent Splice Strand
CG9467-RA 1..2193 283..2475 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:36:41 Download gff for LD44003.complete
Subject Subject Range Query Range Percent Splice Strand
CG9467-RA 40..3200 1..3161 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:31:46 Download gff for LD44003.complete
Subject Subject Range Query Range Percent Splice Strand
CG9467-RA 40..3205 1..3166 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:23 Download gff for LD44003.complete
Subject Subject Range Query Range Percent Splice Strand
CG9467-RA 15..3180 1..3166 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:15:37 Download gff for LD44003.complete
Subject Subject Range Query Range Percent Splice Strand
CG9467-RA 40..3200 1..3161 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:20 Download gff for LD44003.complete
Subject Subject Range Query Range Percent Splice Strand
CG9467-RA 15..3180 1..3166 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:50:36 Download gff for LD44003.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9797769..9800590 345..3166 100 <- Minus
3R 9800669..9801012 1..344 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:50:36 Download gff for LD44003.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9797769..9800590 345..3166 100 <- Minus
3R 9800669..9801012 1..344 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:50:36 Download gff for LD44003.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9797769..9800590 345..3166 100 <- Minus
3R 9800669..9801012 1..344 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:23 Download gff for LD44003.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5623491..5626312 345..3166 100 <- Minus
arm_3R 5626391..5626734 1..344 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:52:32 Download gff for LD44003.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9538600..9541421 345..3166 100 <- Minus
3R 9541500..9541843 1..344 100   Minus

LD44003.pep Sequence

Translation from 282 to 2474

> LD44003.pep
MSHFTHASSSDLVNLNVGGQRFSTSRQTLTWIPDTFFTALLSGRISSLRD
EHNAIFIDRDPTLFSIILNYLRTKDIDIKNCEIRALRHEAEYYGITPLTK
RLALCEDLNHSSCGDLLFYGFLAAPPMPSNEAVAATSVDESLPSTSASAI
GSRPGSMVRVPEPSRSSHSRNSSWDLRLGRTGSTGNGANPPAPMLHSRNP
SIDFMRHSRNSSADLNKVFRNEVGLVFSPTQNSNWVDPLRVQIIKAHQNW
IAVAYAHFVTCYRVKDSNGWQQVFTSPHIDATIERIAINSKVNTSAAEPL
PSKMVAISYGSQIRLWSIQEGGQKTDVGTFNLNVRVEYLFFIGSQLVALS
SSGKIGVWHAMTQHWQIQDLVPVLSFDSAGSFLLLGCNNGSIYYIDMQKF
PLRIKDNDLLVTELYKDVTLDPITAISVYLTPKTSSISGNWIEIAYGTKS
GAVRIIVQHPETAGHGPHLFETFFVHQSPVTKVMLSEKYLVSVCSEYHHV
RTWRLTRFRGMLSTQPGSTPEASFKIVSLEATDTSYSYAAGNDFGPYGDY
DDMIFVQKVVPETDQLYVRLASNGDRVCVIRSVDSSTISAFCVLECEVSS
RFILTGHCNGAIQMWDLTTALALLSKDEPQQKINGGPDTNELLRLLDQCE
ISNSSCTTPCMSPCLSAMGNGSGMASSIARMKASNIALLNREPAMAMAVQ
AVQPPAQVQPALPEAVAPAAAIPMADDNNE*

LD44003.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17150-PA 739 GF17150-PA 1..711 1..713 3518 92.7 Plus
Dana\GF21506-PA 297 GF21506-PA 13..104 9..98 167 45.7 Plus
Dana\GF20912-PA 266 GF20912-PA 80..174 13..105 162 38.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17322-PA 727 GG17322-PA 1..727 1..730 3789 96.8 Plus
Dere\GG10865-PA 301 GG10865-PA 17..108 9..98 161 44.6 Plus
Dere\GG12864-PA 208 GG12864-PA 24..118 13..105 159 38.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14231-PA 810 GH14231-PA 1..736 1..699 3129 82.1 Plus
Dgri\GH23729-PA 297 GH23729-PA 13..104 9..98 164 44.6 Plus
Dgri\GH20158-PA 297 GH20158-PA 13..104 9..98 164 44.6 Plus
Dgri\GH17955-PA 210 GH17955-PA 24..118 13..105 157 37.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9467-PA 730 CG9467-PA 1..730 1..730 3801 100 Plus
CG10465-PA 301 CG10465-PA 17..108 9..98 158 46.7 Plus
inc-PC 211 CG32810-PC 24..118 13..105 152 38.9 Plus
inc-PD 211 CG32810-PD 24..118 13..105 152 38.9 Plus
inc-PB 211 CG32810-PB 24..118 13..105 152 38.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22137-PA 787 GI22137-PA 1..713 1..692 3202 85.1 Plus
Dmoj\GI20668-PA 297 GI20668-PA 13..104 9..98 163 44.6 Plus
Dmoj\GI16490-PA 210 GI16490-PA 24..118 13..105 160 38.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23225-PA 395 GL23225-PA 1..354 1..354 1686 90.2 Plus
Dper\GL23226-PA 359 GL23226-PA 1..303 397..695 1529 93.4 Plus
Dper\GL11047-PA 297 GL11047-PA 13..104 9..98 163 44.6 Plus
Dper\GL14263-PA 210 GL14263-PA 24..121 13..110 159 37 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21809-PA 751 GA21809-PA 1..699 1..695 3465 92.2 Plus
Dpse\GA17157-PA 210 GA17157-PA 24..121 13..110 159 37 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26209-PA 730 GM26209-PA 1..730 1..730 3913 99.3 Plus
Dsec\GM11095-PA 301 GM11095-PA 17..108 9..98 161 44.6 Plus
Dsec\GM19148-PA 211 GM19148-PA 24..118 13..105 159 38.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10363-PA 301 GD10363-PA 17..108 9..98 161 44.6 Plus
Dsim\GD24718-PA 211 GD24718-PA 24..118 13..105 159 38.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24256-PA 795 GJ24256-PA 1..720 1..694 3217 85.1 Plus
Dvir\GJ16035-PA 210 GJ16035-PA 24..118 13..105 164 38.9 Plus
Dvir\GJ20417-PA 297 GJ20417-PA 13..104 9..98 164 44.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14512-PA 756 GK14512-PA 1..702 1..695 3379 89.6 Plus
Dwil\GK14663-PA 210 GK14663-PA 24..118 13..105 161 38.9 Plus
Dwil\GK21368-PA 388 GK21368-PA 104..198 9..105 161 42.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24726-PA 728 GE24726-PA 1..728 1..730 3880 98.9 Plus
Dyak\GE11245-PA 301 GE11245-PA 17..108 9..98 161 44.6 Plus

LD44003.hyp Sequence

Translation from 282 to 2474

> LD44003.hyp
MSHFTHASSSDLVNLNVGGQRFSTSRQTLTWIPDTFFTALLSGRISSLRD
EHNAIFIDRDPTLFSIILNYLRTKDIDIKNCEIRALRHEAEYYGITPLTK
RLALCEDLNHSSCGDLLFYGFLAAPPMPSNEAVAATSVDESLPSTSASAI
GSRPGSMVRVPEPSRSSHSRNSSWDLRLGRTGSTGNGANPPAPMLHSRNP
SIDFMRHSRNSSADLNKVFRNEVGLVFSPTQNSNWVDPLRVQIIKAHQNW
IAVAYAHFVTCYRVKDSNGWQQVFTSPHIDATIERIAINSKVNTSAAEPL
PSKMVAISYGSQIRLWSIQEGGQKTDVGTFNLNVRVEYLFFIGSQLVALS
SSGKIGVWHAMTQHWQIQDLVPVLSFDSAGSFLLLGCNNGSIYYIDMQKF
PLRIKDNDLLVTELYKDVTLDPITAISVYLTPKTSSISGNWIEIAYGTKS
GAVRIIVQHPETAGHGPHLFETFFVHQSPVTKVMLSEKYLVSVCSEYHHV
RTWRLTRFRGMLSTQPGSTPEASFKIVSLEATDTSYSYAAGNDFGPYGDY
DDMIFVQKVVPETDQLYVRLASNGDRVCVIRSVDSSTISAFCVLECEVSS
RFILTGHCNGAIQMWDLTTALALLSKDEPQQKINGGPDTNELLRLLDQCE
ISNSSCTTPCMSPCLSAMGNGSGMASSIARMKASNIALLNREPAMAMAVQ
AVQPPAQVQPALPEAVAPAAAIPMADDNNE*

LD44003.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9467-PA 730 CG9467-PA 1..730 1..730 3801 100 Plus
CG10465-PA 301 CG10465-PA 17..108 9..98 158 46.7 Plus
inc-PC 211 CG32810-PC 24..118 13..105 152 38.9 Plus
inc-PD 211 CG32810-PD 24..118 13..105 152 38.9 Plus
inc-PB 211 CG32810-PB 24..118 13..105 152 38.9 Plus