BDGP Sequence Production Resources |
Search the DGRC for LD44072
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 440 |
Well: | 72 |
Vector: | pOT2 |
Associated Gene/Transcript | xit-RA |
Protein status: | LD44072.pep: gold |
Preliminary Size: | 1589 |
Sequenced Size: | 1624 |
Gene | Date | Evidence |
---|---|---|
CG4542 | 2001-01-01 | Release 2 assignment |
CG4542 | 2001-11-09 | Blastp of sequenced clone |
CG4542 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4542 | 2008-04-29 | Release 5.5 accounting |
Atx-1 | 2008-08-15 | Release 5.9 accounting |
CG4542 | 2008-08-15 | Release 5.9 accounting |
CG4542 | 2008-12-18 | 5.12 accounting |
Atx-1 | 2008-12-18 | 5.12 accounting |
1624 bp (1624 high quality bases) assembled on 2001-11-09
GenBank Submission: AY069662
> LD44072.complete AGAAACGAAGATGAAGGACCTCTTCTGGCACCTGGTGGGCATAGCCACCG GCCTAAAGATCCTGCTGATTCCAGCCTACCATTCCACGGATTTCGAAGTC CATCGCAACTGGCTGGCCATCACCCACAGTTTGCCGCTGAATCAGTGGTA TGTGGACGCCACCAGCGAGTGGACACTGGACTATCCGCCGTTCTTCGCCT ACTTCGAGTGGCTGCTCTCGCAGGTGGCCAAGTACGTGGATCCACGAATG CTGGTGGTGGATAACCTGAATTACGAGTCCAAGGCCACCGTTTACTTTCA GCGGCTCTCGGTGATTGTTACGGATCTAGTGTATGTGCTCGGCGTGCGCA GCTGCCTGGGCTCACTGGGATTGGGCAGGGATACGCAGCAGTTCTTTGCC GCCTCCATGTTGCTGCTCCTCAACGTGGGATTGATCTTCGTGGACCACAT TCACTTTCAGTACAATGGCTTGCTGTTCGGCATACTGCTCCTGAGCATCG GTTCCCTCATCCGGCAGCGGTTCCTCTGGAGCGCCTTTGCCTTCGCCGTG CTGCTCAACTTTAAGCACATCTTTCTGTACATGGCGCCCGCTTTTGGGGT CTACCTGCTGCGTTTCTATTGCCTGGAGCAAGCGAGTGTGGTGTCTGCGG TGGGTGCCGTTGTCAAGCTGCTGGTCGTTGGACTTACTCCGTTCGCCGTG TCTTTCGGACCCTTCTGGCAGCAATTGCCGCAAGTCCTCTCCCGTCTGTT TCCTTTCAAGCGTGGCCTAACGCACGCCTACTGGGCACCCAACTTCTGGG CGCTGTACAATGCCGCCGACAAGTTGGCCGCCGGAGTTTTGAAGGTACAG GATGGCGGTGCCTCGACGACGTCAGGATTGGTCCAGGAGGTCAGGCACTC GGTGCTGCCAGCCATCACACCGCCTGTGACTTTTGCCCTGACCGCTCTCT TCATGCTGCCCATTTTGGTGAAGCTCTTTCGCAGTGCCAAGAAACAAAGT CCGCTGGTCTTCCTGCGAGCGGTGGTTTTGTGCGGCTGTTCCTCCTTCGT CTTCGGCTGGCATGTGCACGAGAAGGCCATCTTAATGGTGCTCCTTCCGC TCTGTCTGCTCACGCTGGTAAACCGGGAGGATGCCAGATACGCCTATGTC CTTGGCATTGCCGGCTATTTCTCTCTCTTTCCGCTGCTCTTCGATGCGGA TCTGTACATTCCCCGGTATTCCCTGTACATGTCGTACGTGGCCATGATGT ACGGCCAGCTGTATCGCATCTTCCCCGGCTTCCGAGGCTTCCACACGCTG GAGTGGCTATACATGCTGGGCTTCATGGCTATTCCGCTGTACGAGCATCT GCTCTCTTTCCTGCTGCACCTGGACCAGCGCCTGCCCTTCTTGCCCCTAC TGCTGACCTCCGTGTACTCGGCGTTGGGAGTGCTCTACTTCTTTGGGGCC TACTATCTGTACGCTCTGGGCATTAGCTGGGGCAAGGTGCCCATCGCATC GTCCACATCCGCGGCCGCTGTTAAGAGAAAACGAAAAACCAAATAAACGG AGCGCTATAAAGGGCTTCAGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 6713371..6714285 | 79..993 | 4470 | 99.2 | Plus |
chrX | 22417052 | chrX | 6714526..6714995 | 1104..1573 | 2320 | 99.6 | Plus |
chrX | 22417052 | chrX | 6714349..6714459 | 994..1104 | 540 | 99.1 | Plus |
chrX | 22417052 | chrX | 6713238..6713315 | 1..78 | 390 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 6821216..6822130 | 79..993 | 4575 | 100 | Plus |
X | 23542271 | X | 6822371..6822843 | 1104..1576 | 2365 | 100 | Plus |
X | 23542271 | X | 6822194..6822304 | 994..1104 | 555 | 100 | Plus |
X | 23542271 | X | 6821083..6821160 | 1..78 | 390 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 6829314..6830228 | 79..993 | 4575 | 100 | Plus |
X | 23527363 | X | 6830469..6830941 | 1104..1576 | 2365 | 100 | Plus |
X | 23527363 | X | 6830292..6830402 | 994..1104 | 555 | 100 | Plus |
X | 23527363 | X | 6829181..6829258 | 1..78 | 390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 6713238..6713315 | 1..78 | 100 | -> | Plus |
chrX | 6713371..6714285 | 79..993 | 99 | -> | Plus |
chrX | 6714349..6714459 | 994..1104 | 99 | -> | Plus |
chrX | 6714527..6714995 | 1105..1573 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4542-RB | 1..1536 | 11..1546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4542-RA | 1..1536 | 11..1546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4542-RA | 1..1536 | 11..1546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4542-RB | 1..1536 | 11..1546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
xit-RA | 1..1536 | 11..1546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atx-1-RB | 65..1637 | 1..1573 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4542-RA | 65..1637 | 1..1573 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4542-RA | 68..1640 | 1..1573 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atx-1-RB | 65..1637 | 1..1573 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
xit-RA | 68..1640 | 1..1573 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6822372..6822840 | 1105..1573 | 100 | Plus | |
X | 6821083..6821160 | 1..78 | 100 | -> | Plus |
X | 6821216..6822130 | 79..993 | 100 | -> | Plus |
X | 6822194..6822304 | 994..1104 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6822372..6822840 | 1105..1573 | 100 | Plus | |
X | 6821083..6821160 | 1..78 | 100 | -> | Plus |
X | 6821216..6822130 | 79..993 | 100 | -> | Plus |
X | 6822194..6822304 | 994..1104 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6822372..6822840 | 1105..1573 | 100 | Plus | |
X | 6821083..6821160 | 1..78 | 100 | -> | Plus |
X | 6821216..6822130 | 79..993 | 100 | -> | Plus |
X | 6822194..6822304 | 994..1104 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 6715116..6715193 | 1..78 | 100 | -> | Plus |
arm_X | 6715249..6716163 | 79..993 | 100 | -> | Plus |
arm_X | 6716227..6716337 | 994..1104 | 100 | -> | Plus |
arm_X | 6716405..6716873 | 1105..1573 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6829314..6830228 | 79..993 | 100 | -> | Plus |
X | 6830292..6830402 | 994..1104 | 100 | -> | Plus |
X | 6830470..6830938 | 1105..1573 | 100 | Plus | |
X | 6829181..6829258 | 1..78 | 100 | -> | Plus |
Translation from 0 to 1545
> LD44072.hyp ETKMKDLFWHLVGIATGLKILLIPAYHSTDFEVHRNWLAITHSLPLNQWY VDATSEWTLDYPPFFAYFEWLLSQVAKYVDPRMLVVDNLNYESKATVYFQ RLSVIVTDLVYVLGVRSCLGSLGLGRDTQQFFAASMLLLLNVGLIFVDHI HFQYNGLLFGILLLSIGSLIRQRFLWSAFAFAVLLNFKHIFLYMAPAFGV YLLRFYCLEQASVVSAVGAVVKLLVVGLTPFAVSFGPFWQQLPQVLSRLF PFKRGLTHAYWAPNFWALYNAADKLAAGVLKVQDGGASTTSGLVQEVRHS VLPAITPPVTFALTALFMLPILVKLFRSAKKQSPLVFLRAVVLCGCSSFV FGWHVHEKAILMVLLPLCLLTLVNREDARYAYVLGIAGYFSLFPLLFDAD LYIPRYSLYMSYVAMMYGQLYRIFPGFRGFHTLEWLYMLGFMAIPLYEHL LSFLLHLDQRLPFLPLLLTSVYSALGVLYFFGAYYLYALGISWGKVPIAS STSAAAVKRKRKTK*
Translation from 10 to 1545
> LD44072.pep MKDLFWHLVGIATGLKILLIPAYHSTDFEVHRNWLAITHSLPLNQWYVDA TSEWTLDYPPFFAYFEWLLSQVAKYVDPRMLVVDNLNYESKATVYFQRLS VIVTDLVYVLGVRSCLGSLGLGRDTQQFFAASMLLLLNVGLIFVDHIHFQ YNGLLFGILLLSIGSLIRQRFLWSAFAFAVLLNFKHIFLYMAPAFGVYLL RFYCLEQASVVSAVGAVVKLLVVGLTPFAVSFGPFWQQLPQVLSRLFPFK RGLTHAYWAPNFWALYNAADKLAAGVLKVQDGGASTTSGLVQEVRHSVLP AITPPVTFALTALFMLPILVKLFRSAKKQSPLVFLRAVVLCGCSSFVFGW HVHEKAILMVLLPLCLLTLVNREDARYAYVLGIAGYFSLFPLLFDADLYI PRYSLYMSYVAMMYGQLYRIFPGFRGFHTLEWLYMLGFMAIPLYEHLLSF LLHLDQRLPFLPLLLTSVYSALGVLYFFGAYYLYALGISWGKVPIASSTS AAAVKRKRKTK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21165-PA | 514 | GF21165-PA | 1..504 | 1..505 | 2101 | 83.2 | Plus |
Dana\GF15776-PA | 479 | GF15776-PA | 35..347 | 27..357 | 301 | 27.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19614-PA | 513 | GG19614-PA | 1..513 | 1..511 | 2409 | 95.1 | Plus |
Dere\GG10119-PA | 475 | GG10119-PA | 30..419 | 21..440 | 343 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24530-PA | 509 | GH24530-PA | 1..499 | 1..511 | 1761 | 67.8 | Plus |
Dgri\GH13362-PA | 483 | GH13362-PA | 35..394 | 27..405 | 321 | 30.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
xit-PA | 511 | CG4542-PA | 1..511 | 1..511 | 2661 | 100 | Plus |
gny-PB | 475 | CG5091-PB | 30..472 | 21..498 | 367 | 28.4 | Plus |
gny-PA | 475 | CG5091-PA | 30..472 | 21..498 | 367 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21610-PA | 515 | GI21610-PA | 1..515 | 1..511 | 1803 | 68.1 | Plus |
Dmoj\GI18289-PA | 474 | GI18289-PA | 35..392 | 27..405 | 319 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26756-PA | 492 | GL26756-PA | 5..492 | 2..511 | 1976 | 73.9 | Plus |
Dper\GL19144-PA | 475 | GL19144-PA | 35..396 | 27..409 | 307 | 29.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18244-PA | 523 | GA18244-PA | 10..523 | 2..511 | 2132 | 78.4 | Plus |
Dpse\GA18653-PA | 475 | GA18653-PA | 35..396 | 27..409 | 308 | 29.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12534-PA | 511 | GM12534-PA | 1..511 | 1..511 | 2594 | 97.3 | Plus |
Dsec\GM18280-PA | 475 | GM18280-PA | 30..347 | 21..357 | 320 | 30.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16816-PA | 153 | GD16816-PA | 1..153 | 359..511 | 760 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16548-PA | 513 | GJ16548-PA | 1..513 | 1..511 | 1776 | 68.9 | Plus |
Dvir\GJ15406-PA | 474 | GJ15406-PA | 35..392 | 27..405 | 299 | 29.4 | Plus |