Clone LD44072 Report

Search the DGRC for LD44072

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:440
Well:72
Vector:pOT2
Associated Gene/Transcriptxit-RA
Protein status:LD44072.pep: gold
Preliminary Size:1589
Sequenced Size:1624

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4542 2001-01-01 Release 2 assignment
CG4542 2001-11-09 Blastp of sequenced clone
CG4542 2003-01-01 Sim4 clustering to Release 3
CG4542 2008-04-29 Release 5.5 accounting
Atx-1 2008-08-15 Release 5.9 accounting
CG4542 2008-08-15 Release 5.9 accounting
CG4542 2008-12-18 5.12 accounting
Atx-1 2008-12-18 5.12 accounting

Clone Sequence Records

LD44072.complete Sequence

1624 bp (1624 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069662

> LD44072.complete
AGAAACGAAGATGAAGGACCTCTTCTGGCACCTGGTGGGCATAGCCACCG
GCCTAAAGATCCTGCTGATTCCAGCCTACCATTCCACGGATTTCGAAGTC
CATCGCAACTGGCTGGCCATCACCCACAGTTTGCCGCTGAATCAGTGGTA
TGTGGACGCCACCAGCGAGTGGACACTGGACTATCCGCCGTTCTTCGCCT
ACTTCGAGTGGCTGCTCTCGCAGGTGGCCAAGTACGTGGATCCACGAATG
CTGGTGGTGGATAACCTGAATTACGAGTCCAAGGCCACCGTTTACTTTCA
GCGGCTCTCGGTGATTGTTACGGATCTAGTGTATGTGCTCGGCGTGCGCA
GCTGCCTGGGCTCACTGGGATTGGGCAGGGATACGCAGCAGTTCTTTGCC
GCCTCCATGTTGCTGCTCCTCAACGTGGGATTGATCTTCGTGGACCACAT
TCACTTTCAGTACAATGGCTTGCTGTTCGGCATACTGCTCCTGAGCATCG
GTTCCCTCATCCGGCAGCGGTTCCTCTGGAGCGCCTTTGCCTTCGCCGTG
CTGCTCAACTTTAAGCACATCTTTCTGTACATGGCGCCCGCTTTTGGGGT
CTACCTGCTGCGTTTCTATTGCCTGGAGCAAGCGAGTGTGGTGTCTGCGG
TGGGTGCCGTTGTCAAGCTGCTGGTCGTTGGACTTACTCCGTTCGCCGTG
TCTTTCGGACCCTTCTGGCAGCAATTGCCGCAAGTCCTCTCCCGTCTGTT
TCCTTTCAAGCGTGGCCTAACGCACGCCTACTGGGCACCCAACTTCTGGG
CGCTGTACAATGCCGCCGACAAGTTGGCCGCCGGAGTTTTGAAGGTACAG
GATGGCGGTGCCTCGACGACGTCAGGATTGGTCCAGGAGGTCAGGCACTC
GGTGCTGCCAGCCATCACACCGCCTGTGACTTTTGCCCTGACCGCTCTCT
TCATGCTGCCCATTTTGGTGAAGCTCTTTCGCAGTGCCAAGAAACAAAGT
CCGCTGGTCTTCCTGCGAGCGGTGGTTTTGTGCGGCTGTTCCTCCTTCGT
CTTCGGCTGGCATGTGCACGAGAAGGCCATCTTAATGGTGCTCCTTCCGC
TCTGTCTGCTCACGCTGGTAAACCGGGAGGATGCCAGATACGCCTATGTC
CTTGGCATTGCCGGCTATTTCTCTCTCTTTCCGCTGCTCTTCGATGCGGA
TCTGTACATTCCCCGGTATTCCCTGTACATGTCGTACGTGGCCATGATGT
ACGGCCAGCTGTATCGCATCTTCCCCGGCTTCCGAGGCTTCCACACGCTG
GAGTGGCTATACATGCTGGGCTTCATGGCTATTCCGCTGTACGAGCATCT
GCTCTCTTTCCTGCTGCACCTGGACCAGCGCCTGCCCTTCTTGCCCCTAC
TGCTGACCTCCGTGTACTCGGCGTTGGGAGTGCTCTACTTCTTTGGGGCC
TACTATCTGTACGCTCTGGGCATTAGCTGGGGCAAGGTGCCCATCGCATC
GTCCACATCCGCGGCCGCTGTTAAGAGAAAACGAAAAACCAAATAAACGG
AGCGCTATAAAGGGCTTCAGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

LD44072.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4542-RB 2892 CG4542-RB 65..1640 1..1576 7880 100 Plus
CG4542-RA 1632 CG4542-RA 57..1632 1..1576 7880 100 Plus
Atx-1-RB 2906 Atx-1-RB 79..1654 1..1576 7880 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6713371..6714285 79..993 4470 99.2 Plus
chrX 22417052 chrX 6714526..6714995 1104..1573 2320 99.6 Plus
chrX 22417052 chrX 6714349..6714459 994..1104 540 99.1 Plus
chrX 22417052 chrX 6713238..6713315 1..78 390 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6821216..6822130 79..993 4575 100 Plus
X 23542271 X 6822371..6822843 1104..1576 2365 100 Plus
X 23542271 X 6822194..6822304 994..1104 555 100 Plus
X 23542271 X 6821083..6821160 1..78 390 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6829314..6830228 79..993 4575 100 Plus
X 23527363 X 6830469..6830941 1104..1576 2365 100 Plus
X 23527363 X 6830292..6830402 994..1104 555 100 Plus
X 23527363 X 6829181..6829258 1..78 390 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:51:35 has no hits.

LD44072.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:52:46 Download gff for LD44072.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6713238..6713315 1..78 100 -> Plus
chrX 6713371..6714285 79..993 99 -> Plus
chrX 6714349..6714459 994..1104 99 -> Plus
chrX 6714527..6714995 1105..1573 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:50 Download gff for LD44072.complete
Subject Subject Range Query Range Percent Splice Strand
CG4542-RB 1..1536 11..1546 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:32:31 Download gff for LD44072.complete
Subject Subject Range Query Range Percent Splice Strand
CG4542-RA 1..1536 11..1546 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:14:10 Download gff for LD44072.complete
Subject Subject Range Query Range Percent Splice Strand
CG4542-RA 1..1536 11..1546 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:11 Download gff for LD44072.complete
Subject Subject Range Query Range Percent Splice Strand
CG4542-RB 1..1536 11..1546 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:42:21 Download gff for LD44072.complete
Subject Subject Range Query Range Percent Splice Strand
xit-RA 1..1536 11..1546 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:11:17 Download gff for LD44072.complete
Subject Subject Range Query Range Percent Splice Strand
Atx-1-RB 65..1637 1..1573 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:32:31 Download gff for LD44072.complete
Subject Subject Range Query Range Percent Splice Strand
CG4542-RA 65..1637 1..1573 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:14:10 Download gff for LD44072.complete
Subject Subject Range Query Range Percent Splice Strand
CG4542-RA 68..1640 1..1573 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:11 Download gff for LD44072.complete
Subject Subject Range Query Range Percent Splice Strand
Atx-1-RB 65..1637 1..1573 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:42:21 Download gff for LD44072.complete
Subject Subject Range Query Range Percent Splice Strand
xit-RA 68..1640 1..1573 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:52:46 Download gff for LD44072.complete
Subject Subject Range Query Range Percent Splice Strand
X 6822372..6822840 1105..1573 100   Plus
X 6821083..6821160 1..78 100 -> Plus
X 6821216..6822130 79..993 100 -> Plus
X 6822194..6822304 994..1104 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:52:46 Download gff for LD44072.complete
Subject Subject Range Query Range Percent Splice Strand
X 6822372..6822840 1105..1573 100   Plus
X 6821083..6821160 1..78 100 -> Plus
X 6821216..6822130 79..993 100 -> Plus
X 6822194..6822304 994..1104 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:52:46 Download gff for LD44072.complete
Subject Subject Range Query Range Percent Splice Strand
X 6822372..6822840 1105..1573 100   Plus
X 6821083..6821160 1..78 100 -> Plus
X 6821216..6822130 79..993 100 -> Plus
X 6822194..6822304 994..1104 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:14:10 Download gff for LD44072.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6715116..6715193 1..78 100 -> Plus
arm_X 6715249..6716163 79..993 100 -> Plus
arm_X 6716227..6716337 994..1104 100 -> Plus
arm_X 6716405..6716873 1105..1573 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:36:48 Download gff for LD44072.complete
Subject Subject Range Query Range Percent Splice Strand
X 6829314..6830228 79..993 100 -> Plus
X 6830292..6830402 994..1104 100 -> Plus
X 6830470..6830938 1105..1573 100   Plus
X 6829181..6829258 1..78 100 -> Plus

LD44072.hyp Sequence

Translation from 0 to 1545

> LD44072.hyp
ETKMKDLFWHLVGIATGLKILLIPAYHSTDFEVHRNWLAITHSLPLNQWY
VDATSEWTLDYPPFFAYFEWLLSQVAKYVDPRMLVVDNLNYESKATVYFQ
RLSVIVTDLVYVLGVRSCLGSLGLGRDTQQFFAASMLLLLNVGLIFVDHI
HFQYNGLLFGILLLSIGSLIRQRFLWSAFAFAVLLNFKHIFLYMAPAFGV
YLLRFYCLEQASVVSAVGAVVKLLVVGLTPFAVSFGPFWQQLPQVLSRLF
PFKRGLTHAYWAPNFWALYNAADKLAAGVLKVQDGGASTTSGLVQEVRHS
VLPAITPPVTFALTALFMLPILVKLFRSAKKQSPLVFLRAVVLCGCSSFV
FGWHVHEKAILMVLLPLCLLTLVNREDARYAYVLGIAGYFSLFPLLFDAD
LYIPRYSLYMSYVAMMYGQLYRIFPGFRGFHTLEWLYMLGFMAIPLYEHL
LSFLLHLDQRLPFLPLLLTSVYSALGVLYFFGAYYLYALGISWGKVPIAS
STSAAAVKRKRKTK*

LD44072.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
xit-PA 511 CG4542-PA 1..511 4..514 2661 100 Plus
gny-PB 475 CG5091-PB 30..472 24..501 367 28.4 Plus
gny-PA 475 CG5091-PA 30..472 24..501 367 28.4 Plus

LD44072.pep Sequence

Translation from 10 to 1545

> LD44072.pep
MKDLFWHLVGIATGLKILLIPAYHSTDFEVHRNWLAITHSLPLNQWYVDA
TSEWTLDYPPFFAYFEWLLSQVAKYVDPRMLVVDNLNYESKATVYFQRLS
VIVTDLVYVLGVRSCLGSLGLGRDTQQFFAASMLLLLNVGLIFVDHIHFQ
YNGLLFGILLLSIGSLIRQRFLWSAFAFAVLLNFKHIFLYMAPAFGVYLL
RFYCLEQASVVSAVGAVVKLLVVGLTPFAVSFGPFWQQLPQVLSRLFPFK
RGLTHAYWAPNFWALYNAADKLAAGVLKVQDGGASTTSGLVQEVRHSVLP
AITPPVTFALTALFMLPILVKLFRSAKKQSPLVFLRAVVLCGCSSFVFGW
HVHEKAILMVLLPLCLLTLVNREDARYAYVLGIAGYFSLFPLLFDADLYI
PRYSLYMSYVAMMYGQLYRIFPGFRGFHTLEWLYMLGFMAIPLYEHLLSF
LLHLDQRLPFLPLLLTSVYSALGVLYFFGAYYLYALGISWGKVPIASSTS
AAAVKRKRKTK*

LD44072.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21165-PA 514 GF21165-PA 1..504 1..505 2101 83.2 Plus
Dana\GF15776-PA 479 GF15776-PA 35..347 27..357 301 27.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19614-PA 513 GG19614-PA 1..513 1..511 2409 95.1 Plus
Dere\GG10119-PA 475 GG10119-PA 30..419 21..440 343 30 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24530-PA 509 GH24530-PA 1..499 1..511 1761 67.8 Plus
Dgri\GH13362-PA 483 GH13362-PA 35..394 27..405 321 30.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
xit-PA 511 CG4542-PA 1..511 1..511 2661 100 Plus
gny-PB 475 CG5091-PB 30..472 21..498 367 28.4 Plus
gny-PA 475 CG5091-PA 30..472 21..498 367 28.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21610-PA 515 GI21610-PA 1..515 1..511 1803 68.1 Plus
Dmoj\GI18289-PA 474 GI18289-PA 35..392 27..405 319 28.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26756-PA 492 GL26756-PA 5..492 2..511 1976 73.9 Plus
Dper\GL19144-PA 475 GL19144-PA 35..396 27..409 307 29.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18244-PA 523 GA18244-PA 10..523 2..511 2132 78.4 Plus
Dpse\GA18653-PA 475 GA18653-PA 35..396 27..409 308 29.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12534-PA 511 GM12534-PA 1..511 1..511 2594 97.3 Plus
Dsec\GM18280-PA 475 GM18280-PA 30..347 21..357 320 30.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16816-PA 153 GD16816-PA 1..153 359..511 760 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16548-PA 513 GJ16548-PA 1..513 1..511 1776 68.9 Plus
Dvir\GJ15406-PA 474 GJ15406-PA 35..392 27..405 299 29.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10271-PA 521 GK10271-PA 7..500 1..492 1784 68.8 Plus
Dwil\GK18996-PA 214 GK18996-PA 27..212 27..207 264 35.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16775-PA 506 GE16775-PA 1..506 1..511 2197 89.1 Plus
Dyak\GE18933-PA 475 GE18933-PA 30..347 21..357 323 30.1 Plus