BDGP Sequence Production Resources |
Search the DGRC for LD44083
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 440 |
Well: | 83 |
Vector: | pOT2 |
Associated Gene/Transcript | Tbp-RA |
Protein status: | LD44083.pep: gold |
Preliminary Size: | 1545 |
Sequenced Size: | 1365 |
Gene | Date | Evidence |
---|---|---|
CG9874 | 2001-01-01 | Release 2 assignment |
CG9874 | 2001-11-02 | Blastp of sequenced clone |
CG9874 | 2003-01-01 | Sim4 clustering to Release 3 |
Tbp | 2008-04-29 | Release 5.5 accounting |
Tbp | 2008-08-15 | Release 5.9 accounting |
Tbp | 2008-12-18 | 5.12 accounting |
1365 bp (1365 high quality bases) assembled on 2001-11-02
GenBank Submission: AY069663
> LD44083.complete CGAACGCGGTTGCATTACATTATTATTATTATTACTATTAAATTAATTTC CCGCTCTGTGGGTATGCAATTAAAACCCAAAGTTGAGCCCGTTCAGCAAT CTTGAATTGAGTCACTGAAAAATTCACCGGAGTCCACAATAAACCATCTG TAAGATGGACCAAATGCTAAGCCCCAACTTCTCGATTCCGAGCATCGGAA CGCCGCTCCACCAGATGGAAGCGGACCAGCAGATAGTGGCCAATCCTGTG TACCATCCTCCGGCTGTATCGCAGCCGGATTCGTTGATGCCGGCACCCGG TTCCAGTTCCGTGCAGCACCAGCAGCAGCAACAGCAGTCGGACGCCAGTG GGGGATCAGGTCTCTTTGGCCACGAACCATCGCTCCCGCTGGCGCACAAA CAAATGCAGAGTTACCAGCCATCGGCCTCCTATCAGCAGCAGCAGCAGCA ACAGCAGCTCCAGAGTCAGGCGCCCGGCGGCGGTGGGAGCACTCCGCAGT CCATGATGCAGCCGCAGACGCCGCAGAGCATGATGGCCCACATGATGCCC ATGAGTGAGCGGAGTGTGGGCGGTTCGGGGGCCGGAGGTGGCGGAGATGC CCTGAGCAACATCCACCAGACGATGGGCCCCTCCACGCCGATGACACCAG CCACACCAGGTTCCGCTGATCCCGGTATTGTGCCACAACTTCAGAACATC GTGTCCACGGTTAATCTGTGCTGCAAACTGGACCTCAAGAAAATAGCATT GCATGCGAGAAACGCCGAGTACAATCCTAAGCGATTTGCGGCTGTGATTA TGCGAATCCGAGAGCCCCGGACCACCGCCCTTATTTTCAGCTCCGGCAAG ATGGTGTGCACAGGGGCAAAGAGTGAGGACGACTCCAGACTGGCAGCGAG AAAGTATGCGCGCATCATCCAAAAGCTCGGTTTCCCTGCAAAGTTCCTCG ACTTTAAGATTCAAAACATGGTCGGCTCCTGCGATGTCAAGTTCCCCATA CGCTTGGAAGGCCTGGTGCTGACCCATTGCAACTTCAGCAGCTACGAGCC TGAGCTATTTCCCGGCTTAATCTATCGTATGGTGCGACCTCGAATCGTGC TCCTCATCTTCGTGTCCGGAAAGGTGGTGCTCACTGGAGCAAAGGTGCGG CAGGAGATCTACGATGCCTTCGACAAGATATTCCCCATTTTAAAGAAGTT CAAGAAGCAGTCATAAATAGGATAGCGCTTTATTAGTTCTGTACGTGTAC GTTTTAAGGTCGGTAGTTCTGGAAGTCTGATCATATGAGTGGGAGCAGCC TGGCGAGCAGCTCCGATCGAGAATAAACCACAAAGTAATTTAGCTGTAAA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6870 | 313..462 | 133 | 57.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2475 | 314..458 | 131 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6932 | 314..467 | 129 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2483 | 313..463 | 127 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6898 | 313..463 | 126 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2494..2536 | 432..474 | 116 | 74.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1084..1113 | 313..342 | 114 | 86.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6825 | 313..336 | 111 | 95.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 17572683..17573092 | 938..1347 | 99 | <- | Minus |
chr2R | 17573157..17574093 | 1..937 | 93 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tbp-RA | 1..1062 | 155..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tbp-RA | 1..1062 | 155..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tbp-RA | 1..1062 | 155..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tbp-RA | 1..1062 | 155..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tbp-RA | 1..1062 | 155..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tbp-RA | 35..1377 | 1..1343 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tbp-RA | 35..1377 | 1..1343 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tbp-RA | 37..1383 | 1..1347 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tbp-RA | 35..1377 | 1..1343 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tbp-RA | 37..1383 | 1..1347 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21686196..21686605 | 938..1347 | 100 | <- | Minus |
2R | 21686670..21687606 | 1..937 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21686196..21686605 | 938..1347 | 100 | <- | Minus |
2R | 21686670..21687606 | 1..937 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21686196..21686605 | 938..1347 | 100 | <- | Minus |
2R | 21686670..21687606 | 1..937 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 17573701..17574110 | 938..1347 | 100 | <- | Minus |
arm_2R | 17574175..17575111 | 1..937 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21687395..21687804 | 938..1347 | 100 | <- | Minus |
2R | 21687869..21688805 | 1..937 | 100 | Minus |
Translation from 154 to 1215
> LD44083.pep MDQMLSPNFSIPSIGTPLHQMEADQQIVANPVYHPPAVSQPDSLMPAPGS SSVQHQQQQQQSDASGGSGLFGHEPSLPLAHKQMQSYQPSASYQQQQQQQ QLQSQAPGGGGSTPQSMMQPQTPQSMMAHMMPMSERSVGGSGAGGGGDAL SNIHQTMGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALH ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARK YARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPE LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFK KQS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11627-PA | 348 | GF11627-PA | 1..348 | 1..353 | 1551 | 87.6 | Plus |
Dana\GF14757-PA | 224 | GF14757-PA | 26..223 | 152..351 | 609 | 57 | Plus |
Dana\GF21727-PA | 1683 | GF21727-PA | 1245..1416 | 179..352 | 390 | 41.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20753-PA | 349 | GG20753-PA | 1..349 | 1..353 | 1813 | 98 | Plus |
Dere\GG10512-PA | 224 | GG10512-PA | 15..223 | 141..351 | 615 | 54 | Plus |
Dere\GG18249-PA | 641 | GG18249-PA | 208..392 | 169..352 | 379 | 40.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23121-PA | 348 | GH23121-PA | 1..348 | 1..353 | 1409 | 82.3 | Plus |
Dgri\GH11614-PA | 220 | GH11614-PA | 22..219 | 152..351 | 607 | 56.5 | Plus |
Dgri\GH11849-PA | 689 | GH11849-PA | 197..385 | 162..352 | 399 | 38.7 | Plus |
Dgri\GH10255-PA | 314 | GH10255-PA | 1..195 | 153..350 | 383 | 37.2 | Plus |
Dgri\GH23390-PA | 259 | GH23390-PA | 52..219 | 182..350 | 153 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tbp-PA | 353 | CG9874-PA | 1..353 | 1..353 | 1828 | 100 | Plus |
Trf-PA | 224 | CG7562-PA | 22..223 | 148..351 | 586 | 55.9 | Plus |
Trf2-PJ | 632 | CG18009-PJ | 204..377 | 179..352 | 350 | 41.5 | Plus |
Trf2-PH | 632 | CG18009-PH | 204..377 | 179..352 | 350 | 41.5 | Plus |
Trf2-PI | 1714 | CG18009-PI | 1286..1459 | 179..352 | 350 | 41.5 | Plus |
Trf2-PE | 1715 | CG18009-PE | 1287..1460 | 179..352 | 350 | 41.5 | Plus |
Trf2-PF | 1715 | CG18009-PF | 1287..1460 | 179..352 | 350 | 41.5 | Plus |
Trf2-PG | 1715 | CG18009-PG | 1287..1460 | 179..352 | 350 | 41.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18943-PA | 348 | GI18943-PA | 1..348 | 1..353 | 1379 | 81.4 | Plus |
Dmoj\GI17918-PA | 220 | GI17918-PA | 21..219 | 151..351 | 613 | 56.2 | Plus |
Dmoj\GI14331-PA | 656 | GI14331-PA | 252..436 | 170..352 | 410 | 40.1 | Plus |
Dmoj\GI15474-PA | 442 | GI15474-PA | 93..264 | 179..352 | 393 | 40.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11271-PA | 345 | GL11271-PA | 1..345 | 1..353 | 1539 | 87.3 | Plus |
Dper\GL24756-PA | 220 | GL24756-PA | 22..219 | 152..351 | 618 | 57.5 | Plus |
Dper\GL16412-PA | 987 | GL16412-PA | 496..674 | 172..352 | 392 | 40.3 | Plus |
Dper\GL23716-PA | 640 | GL23716-PA | 234..411 | 172..352 | 334 | 35.4 | Plus |
Dper\GL26452-PA | 240 | GL26452-PA | 41..206 | 186..353 | 163 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22088-PA | 345 | GA22088-PA | 1..345 | 1..353 | 1539 | 87.3 | Plus |
Dpse\GA20441-PA | 220 | GA20441-PA | 22..219 | 152..351 | 618 | 57.5 | Plus |
Dpse\GA14764-PA | 1037 | GA14764-PA | 547..725 | 172..352 | 393 | 40.3 | Plus |
Dpse\GA26713-PA | 642 | GA26713-PA | 234..411 | 172..352 | 342 | 34.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15696-PA | 352 | GM15696-PA | 1..352 | 1..353 | 1834 | 98.9 | Plus |
Dsec\GM16720-PA | 224 | GM16720-PA | 15..223 | 141..351 | 611 | 54 | Plus |
Dsec\GM21561-PA | 278 | GM21561-PA | 10..172 | 190..352 | 358 | 43 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25175-PA | 352 | GD25175-PA | 1..352 | 1..353 | 1840 | 99.4 | Plus |
Dsim\GD23502-PA | 224 | GD23502-PA | 15..223 | 141..351 | 612 | 54 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14917-PA | 352 | GJ14917-PA | 1..352 | 1..353 | 1440 | 82.2 | Plus |
Dvir\Tbp-PA | 351 | GJ21317-PA | 1..351 | 1..353 | 1438 | 81.7 | Plus |
Dvir\GJ17690-PA | 220 | GJ17690-PA | 21..219 | 151..351 | 618 | 57.2 | Plus |
Dvir\GJ19385-PA | 711 | GJ19385-PA | 243..453 | 147..352 | 408 | 37.1 | Plus |
Dvir\GJ17285-PA | 387 | GJ17285-PA | 54..225 | 179..352 | 387 | 40.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10649-PA | 351 | GK10649-PA | 1..351 | 1..353 | 1405 | 82.6 | Plus |
Dwil\GK15318-PA | 226 | GK15318-PA | 29..225 | 154..351 | 612 | 58.1 | Plus |
Dwil\GK16294-PA | 1222 | GK16294-PA | 683..905 | 137..352 | 399 | 36.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13685-PA | 349 | GE13685-PA | 1..349 | 1..353 | 1816 | 98.3 | Plus |
Dyak\GE18732-PA | 224 | GE18732-PA | 15..223 | 141..351 | 621 | 54 | Plus |
Dyak\GE15780-PA | 1872 | GE15780-PA | 1438..1618 | 172..352 | 332 | 39.9 | Plus |
Translation from 154 to 1215
> LD44083.hyp MDQMLSPNFSIPSIGTPLHQMEADQQIVANPVYHPPAVSQPDSLMPAPGS SSVQHQQQQQQSDASGGSGLFGHEPSLPLAHKQMQSYQPSASYQQQQQQQ QLQSQAPGGGGSTPQSMMQPQTPQSMMAHMMPMSERSVGGSGAGGGGDAL SNIHQTMGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALH ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARK YARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPE LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFK KQS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tbp-PA | 353 | CG9874-PA | 1..353 | 1..353 | 1828 | 100 | Plus |
Trf-PA | 224 | CG7562-PA | 22..223 | 148..351 | 586 | 55.9 | Plus |
Trf2-PJ | 632 | CG18009-PJ | 204..377 | 179..352 | 350 | 41.5 | Plus |
Trf2-PH | 632 | CG18009-PH | 204..377 | 179..352 | 350 | 41.5 | Plus |
Trf2-PI | 1714 | CG18009-PI | 1286..1459 | 179..352 | 350 | 41.5 | Plus |