Clone LD44124 Report

Search the DGRC for LD44124

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:441
Well:24
Vector:pOT2
Associated Gene/TranscriptArfip-RA
Protein status:LD44124.pep: gold
Preliminary Size:2167
Sequenced Size:1999

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17184 2001-01-01 Release 2 assignment
CG17184 2003-01-01 Sim4 clustering to Release 3
CG17184 2003-02-24 Blastp of sequenced clone
CG17184 2008-04-29 Release 5.5 accounting
CG17184 2008-08-15 Release 5.9 accounting
CG17184 2008-12-18 5.12 accounting

Clone Sequence Records

LD44124.complete Sequence

1999 bp (1999 high quality bases) assembled on 2003-02-24

GenBank Submission: BT004867

> LD44124.complete
TTTGATGAACTTTATGCGGAATTTTAGGGATTTGAGAATTTTGACGAGTC
CAGGCAGGGGTTACTAAAGTCTCGACTCGCCCAGCGTGCGCCATCGATTT
CGGCGTGGAAATCGAAGTGAAACCTCCAGCGCCGTTGCCCGAGAAACACA
CACACAGACACCTAATCGGGCACACCCCCACACAAAACGGGCAGACAGGA
GGATTTTCCGCTGGCAATTACTCGGTGAGACGGGCGGTTAACTTAACGAC
GGCCATAGCTATGACGGACCGCGAGCGCAGCATTCACGAAATGCTGAAGG
ATGCGCCCTCGCTGAACGACAGCTGCGGAGCGGTGCACACGGGCACCGAA
GGCGGCAGCGGGATCCTTGGAAGCGCCAGCAGCCACAGCATCGCCGGCGG
AGGAGGTGGTGGCGGCAACGTTGGAGTTGGTGTCGGCGGCCCCTTTGGCG
CCCCCAGCAGCCTGCCACTAAGAAACCATTCAGCACCCACCACACCCATG
TCGCCCAGTAGTCCACCATCCGGTAACGGCATCCTGAGCCCCACGGACAG
CGGGAGCGGCAGCATTATACGCACTAGCGCCTCCAAGATCGACAGTCTCA
AGAACTGGAGTATATCGACGTACAAGTGTACGCGACAGATAATGCTGGAG
AAGTTGGGCAAGTCGCAGCGGACCGTGGACTCGGAACTGGAGGCCCAGAT
AGAGCAGTTGCGCGAGACGCAGCGCAAGTATCTGTCCATCTTGAGGCTAA
CGCGGGCCTTTAGTTCGCACTTCCAGCACGTGGTCGTCACACAGCACGCC
CTGGCCGACTCCTTCGCCGATCTGGCCCAGAAGAACCCCGAGCTGCAGAA
AGAGTTCACGTGCAATTCGGAGACGCAGCGCAATCTCACCAAGAACGGCG
AGCTGCTGCTTAATGCGCTCAACTTCTTTATTTCGTCGGTGAACACACTG
TGCAACAAGACGATCGACGATACGCTGCTGACGATACGACAGTACGAAAC
GGCCAGAATCGAATTCGATGCCTACCGCATGGATTTGGAGAACACCAAGC
CGGAGCTGACGCCCTCGGCCGTCGCTCTTGAGGAGACCCAGCGCAGCTAT
GCGCAGCACAAGGAGCAATATGAGAAGCTGCGCTCGGACGTGGCCGTCAA
AATGCAATTTCTCGACGAGAATCGCATTAAAGTGATGCACAAGCAATTGA
TTCTGCTGCACAATGCCATCGCTGCCTACTTCTCGGGCAATGCCATGGCA
CTGGAGAGCACTCTGAAGCAGTTCAACATAAAGCTTAAGTCACCCAATGC
CGTCACTGGATCCTGGCTGGAGCAGTAGATCGAGTAGACGCAGTTCGTCC
CTTTCACTCGCGAAGCACTTAGGCGCGTATATTGGAGGAGATCGGGACAC
GTCGTCCACCTCCACTCATTTGCTGAACGAGCACGCTCTCTAAAAGAAAA
AGGAAAAGATCGGTGGCAGAGATGATTCAGTATGCGATGCAGTGGACAGA
AACACTGCATGGCGAACCATAACAATATTTTCGTGCTAAGTTTAAGTCGA
ATTCCTAAGCCGTAAGCAGAAAGTGAGAGTGGTAGGTGTATGTTATTTAT
ATATTTTTCCAACCGCTTTCCATTGTATGTAACTCGCTGTACTACTCACA
TTTCCACAGCTGGTACGCTGACGTTCCTTTAACTTGTTTGTGTTTCCAAA
TTTTCGTTCGATTATCATCATATTGTTGTCCTCCGCGCTTGTAAAACATA
TATAACAAAGTGTACTCGGTGCAATATGAGTGTTTTAGTTTTAGATATTC
TAGAATGTGTGTATAAATCCTTTGTAATTCACCCAAAACGAATAATCCAT
AACGAATCGAAACTGTTTTTGCGAGCTTGCATAATTTGAAATCATTGTTT
TACTAGTCATCGTATTATTTACACTAAAATGAAGTCTATATATATATAAA
AATATATAAATAAAAACTATTTAATTACACCAAAAAAAAAAAAAAAAAA

LD44124.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17184-RA 2084 CG17184-RA 104..2084 1..1981 9905 100 Plus
CG17184-RB 2176 CG17184-RB 196..2176 1..1981 9905 100 Plus
CG14701-RA 517 CG14701-RA 395..517 1984..1862 615 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7058012..7058711 1981..1282 3380 98.9 Minus
chr3R 27901430 chr3R 7059499..7060024 1006..481 2615 99.8 Minus
chr3R 27901430 chr3R 7060085..7060567 483..1 2415 100 Minus
chr3R 27901430 chr3R 7058985..7059155 1175..1005 855 100 Minus
chr3R 27901430 chr3R 7058800..7058907 1283..1176 540 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11232426..11233128 1984..1282 3515 100 Minus
3R 32079331 3R 11233922..11234447 1006..481 2630 100 Minus
3R 32079331 3R 11234508..11234990 483..1 2415 100 Minus
3R 32079331 3R 11233402..11233572 1175..1005 855 100 Minus
3R 32079331 3R 11233217..11233324 1283..1176 540 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10973257..10973959 1984..1282 3515 100 Minus
3R 31820162 3R 10974753..10975278 1006..481 2630 100 Minus
3R 31820162 3R 10975339..10975821 483..1 2415 100 Minus
3R 31820162 3R 10974233..10974403 1175..1005 855 100 Minus
3R 31820162 3R 10974048..10974155 1283..1176 540 100 Minus
Blast to na_te.dros performed on 2019-03-16 01:35:25 has no hits.

LD44124.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:36:31 Download gff for LD44124.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7058800..7058907 1176..1283 100 <- Minus
chr3R 7058985..7059153 1007..1175 100 <- Minus
chr3R 7058060..7058709 1284..1933 98 <- Minus
chr3R 7059499..7060021 484..1006 99 <- Minus
chr3R 7060085..7060127 441..483 100 == Minus
chr3R 7060227..7060567 1..341 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:26:54 Download gff for LD44124.complete
Subject Subject Range Query Range Percent Splice Strand
CG17184-RA 1..1068 261..1328 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:48:44 Download gff for LD44124.complete
Subject Subject Range Query Range Percent Splice Strand
CG17184-RA 1..1068 261..1328 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:07:59 Download gff for LD44124.complete
Subject Subject Range Query Range Percent Splice Strand
Arfip-RA 1..1068 261..1328 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:30:39 Download gff for LD44124.complete
Subject Subject Range Query Range Percent Splice Strand
CG17184-RA 1..1068 261..1328 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:36:50 Download gff for LD44124.complete
Subject Subject Range Query Range Percent Splice Strand
Arfip-RA 1..1068 261..1328 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:58:47 Download gff for LD44124.complete
Subject Subject Range Query Range Percent Splice Strand
CG17184-RA 39..2019 1..1981 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:48:44 Download gff for LD44124.complete
Subject Subject Range Query Range Percent Splice Strand
CG17184-RA 54..2034 1..1981 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:07:59 Download gff for LD44124.complete
Subject Subject Range Query Range Percent Splice Strand
Arfip-RA 24..2004 1..1981 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:30:39 Download gff for LD44124.complete
Subject Subject Range Query Range Percent Splice Strand
CG17184-RA 39..2019 1..1981 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:36:50 Download gff for LD44124.complete
Subject Subject Range Query Range Percent Splice Strand
Arfip-RA 24..2004 1..1981 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:31 Download gff for LD44124.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11232429..11233126 1284..1981 100 <- Minus
3R 11233217..11233324 1176..1283 100 <- Minus
3R 11233402..11233570 1007..1175 100 <- Minus
3R 11233922..11234444 484..1006 100 <- Minus
3R 11234508..11234990 1..483 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:31 Download gff for LD44124.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11232429..11233126 1284..1981 100 <- Minus
3R 11233217..11233324 1176..1283 100 <- Minus
3R 11233402..11233570 1007..1175 100 <- Minus
3R 11233922..11234444 484..1006 100 <- Minus
3R 11234508..11234990 1..483 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:31 Download gff for LD44124.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11232429..11233126 1284..1981 100 <- Minus
3R 11233217..11233324 1176..1283 100 <- Minus
3R 11233402..11233570 1007..1175 100 <- Minus
3R 11233922..11234444 484..1006 100 <- Minus
3R 11234508..11234990 1..483 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:07:59 Download gff for LD44124.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7058151..7058848 1284..1981 100 <- Minus
arm_3R 7058939..7059046 1176..1283 100 <- Minus
arm_3R 7059124..7059292 1007..1175 100 <- Minus
arm_3R 7059644..7060166 484..1006 100 <- Minus
arm_3R 7060230..7060712 1..483 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:08:56 Download gff for LD44124.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10973260..10973957 1284..1981 100 <- Minus
3R 10974048..10974155 1176..1283 100 <- Minus
3R 10974233..10974401 1007..1175 100 <- Minus
3R 10974753..10975275 484..1006 100 <- Minus
3R 10975339..10975821 1..483 100   Minus

LD44124.hyp Sequence

Translation from 260 to 1327

> LD44124.hyp
MTDRERSIHEMLKDAPSLNDSCGAVHTGTEGGSGILGSASSHSIAGGGGG
GGNVGVGVGGPFGAPSSLPLRNHSAPTTPMSPSSPPSGNGILSPTDSGSG
SIIRTSASKIDSLKNWSISTYKCTRQIMLEKLGKSQRTVDSELEAQIEQL
RETQRKYLSILRLTRAFSSHFQHVVVTQHALADSFADLAQKNPELQKEFT
CNSETQRNLTKNGELLLNALNFFISSVNTLCNKTIDDTLLTIRQYETARI
EFDAYRMDLENTKPELTPSAVALEETQRSYAQHKEQYEKLRSDVAVKMQF
LDENRIKVMHKQLILLHNAIAAYFSGNAMALESTLKQFNIKLKSPNAVTG
SWLEQ*

LD44124.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
Arfip-PA 355 CG17184-PA 1..355 1..355 1809 100 Plus

LD44124.pep Sequence

Translation from 260 to 1327

> LD44124.pep
MTDRERSIHEMLKDAPSLNDSCGAVHTGTEGGSGILGSASSHSIAGGGGG
GGNVGVGVGGPFGAPSSLPLRNHSAPTTPMSPSSPPSGNGILSPTDSGSG
SIIRTSASKIDSLKNWSISTYKCTRQIMLEKLGKSQRTVDSELEAQIEQL
RETQRKYLSILRLTRAFSSHFQHVVVTQHALADSFADLAQKNPELQKEFT
CNSETQRNLTKNGELLLNALNFFISSVNTLCNKTIDDTLLTIRQYETARI
EFDAYRMDLENTKPELTPSAVALEETQRSYAQHKEQYEKLRSDVAVKMQF
LDENRIKVMHKQLILLHNAIAAYFSGNAMALESTLKQFNIKLKSPNAVTG
SWLEQ*

LD44124.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18250-PA 350 GF18250-PA 1..350 1..355 1617 90.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17231-PA 354 GG17231-PA 1..354 1..355 1843 97.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17348-PA 356 GH17348-PA 1..356 1..355 1511 82.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
Arfip-PA 355 CG17184-PA 1..355 1..355 1809 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23886-PA 351 GI23886-PA 1..351 1..355 1545 82.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12025-PA 362 GL12025-PA 1..362 1..355 1650 88.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14372-PA 362 GA14372-PA 1..362 1..355 1650 88.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26111-PA 355 GM26111-PA 1..355 1..355 1869 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18741-PA 357 GD18741-PA 1..357 1..355 1864 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23979-PA 346 GJ23979-PA 1..346 1..355 1590 84.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11946-PA 354 GK11946-PA 1..354 1..355 1533 84.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24633-PA 354 GE24633-PA 1..354 1..355 1844 97.5 Plus