Clone LD44187 Report

Search the DGRC for LD44187

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:441
Well:87
Vector:pOT2
Associated Gene/TranscriptCG3995-RA
Protein status:LD44187.pep: gold
Preliminary Size:1293
Sequenced Size:1202

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3995 2001-01-01 Release 2 assignment
CG3995 2002-06-13 Blastp of sequenced clone
CG3995 2003-01-01 Sim4 clustering to Release 3
CG3995 2008-04-29 Release 5.5 accounting
CG3995 2008-08-15 Release 5.9 accounting
CG3995 2008-12-18 5.12 accounting

Clone Sequence Records

LD44187.complete Sequence

1202 bp (1202 high quality bases) assembled on 2002-06-13

GenBank Submission: AY122189

> LD44187.complete
GAACTACGAGCCTGTTTCCTTTTCCAAAACAACTTAGTCGAAATGAAGCG
GAAAACGAGCGAGATCTGGTGCTTTTTCCGGGCGGTGGACGACACGTTTG
CGGTGTGTAATATCTGCAAGGCGAAGCTCTCTTACAAGACGACCACCACG
AATCTAAGCAAGCACATGAACAGGATGCACCCCACATCGGGACTCAACCG
GAACTCCAAGTACAAATTCCAGCCGCAGACCACCATCGCCATCGACCGGA
ACAAAGCCAAGCCGCGCAACTCAACGCAAGAGCTGATATTGTTAGAATTC
GTGAAGAAACATCCGCGTCTGCTTCAGAATCCGACGTGGGAAACACGGGG
CAATCTGGAGTCGCTGTGGGAGGAACTGTCATCCGAACTTAATAGCCACG
GTCCGCCGCGAAAAGATATAGCCACCTGGAGAAGGGCCTTAAAGGACTGG
AAGAGGTTTATCCTGAGAAAGGTGGAAAAGAATGAGATGCAGAACATGCC
TTTTGGCACCAGTCTTACTTCGTCGGAGGAAACAATAGCCACACTGTGTA
GATTAAACGAGGATGTAAGTCAGATTATTATGAAGGTCTCCGACGATGAA
ATGCATGAGAATTCCACCACGGAATTTGATGTGGACGAAGTAGAGGATGT
GGTCCCGGAAGAAGATGGTGGCGCCCTTCAGACTTCCGCCGAGTACGTTT
ACGAACCGGAGGAGAACAAAACGGACATTGACCCGCTTTACCTGCAATCT
AACAAACGGGCCGCATTGGCCAGCAGTCGACTGGCGGAGGAGGAGACCAC
ACTGCTTGACAAGATTAGCAATAACCTAGAAATGGTGCACGATACCGCCA
ACAGCGTTCAACTTGCACTCAATGAATTTTTTGTCCTGTACAAGCAGAAG
CTGTACGAGGACAAGCGACATCACTTGGCAATTGAACAGTTAATGGCTGA
GAAAATAGAACTGAAAAAGAAACTATTGGAAATCGAGCAAAAAAAGCTGT
CGCTCAAATAACGGGATATGCACAAAATTAAGTAATATCTTGGTAGTCTT
AATAACCTAATCTTTAAATAATCTAAGTTATTCAATATTTTGATTAATTT
TATCACATTTCTTTTAGCTTGGCCCAAGCCCACTTAATATACAAATTTAA
TTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA

LD44187.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3995-RA 1262 CG3995-RA 109..1261 1..1153 5765 100 Plus
CG5220-RA 1183 CG5220-RA 1113..1183 1153..1083 355 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12866368..12867086 1153..435 3595 100 Minus
chr3R 27901430 chr3R 12867141..12867576 436..1 2180 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17041896..17042614 1153..435 3595 100 Minus
3R 32079331 3R 17042669..17043104 436..1 2180 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16782727..16783445 1153..435 3595 100 Minus
3R 31820162 3R 16783500..16783935 436..1 2180 100 Minus
Blast to na_te.dros performed 2019-03-15 18:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 3635..3676 954..995 111 73.8 Plus

LD44187.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:36:47 Download gff for LD44187.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12866391..12867085 436..1130 100 <- Minus
chr3R 12867142..12867576 1..435 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:27:08 Download gff for LD44187.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 1..969 43..1011 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:20:25 Download gff for LD44187.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 1..969 43..1011 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:08:26 Download gff for LD44187.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 1..969 43..1011 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:11:23 Download gff for LD44187.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 1..969 43..1011 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:03 Download gff for LD44187.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 1..969 43..1011 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:46:12 Download gff for LD44187.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 1..1153 1..1154 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:20:25 Download gff for LD44187.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 1..1153 1..1153 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:08:26 Download gff for LD44187.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 33..1185 1..1153 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:11:23 Download gff for LD44187.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 1..1153 1..1154 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:03 Download gff for LD44187.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 33..1185 1..1153 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:36:47 Download gff for LD44187.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17041895..17042613 436..1154 99 <- Minus
3R 17042670..17043104 1..435 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:36:47 Download gff for LD44187.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17041895..17042613 436..1154 99 <- Minus
3R 17042670..17043104 1..435 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:36:47 Download gff for LD44187.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17041895..17042613 436..1154 99 <- Minus
3R 17042670..17043104 1..435 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:08:26 Download gff for LD44187.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12867617..12868335 436..1154 99 <- Minus
arm_3R 12868392..12868826 1..435 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:43:51 Download gff for LD44187.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16782726..16783444 436..1154 99 <- Minus
3R 16783501..16783935 1..435 100   Minus

LD44187.hyp Sequence

Translation from 0 to 1010

> LD44187.hyp
ELRACFLFQNNLVEMKRKTSEIWCFFRAVDDTFAVCNICKAKLSYKTTTT
NLSKHMNRMHPTSGLNRNSKYKFQPQTTIAIDRNKAKPRNSTQELILLEF
VKKHPRLLQNPTWETRGNLESLWEELSSELNSHGPPRKDIATWRRALKDW
KRFILRKVEKNEMQNMPFGTSLTSSEETIATLCRLNEDVSQIIMKVSDDE
MHENSTTEFDVDEVEDVVPEEDGGALQTSAEYVYEPEENKTDIDPLYLQS
NKRAALASSRLAEEETTLLDKISNNLEMVHDTANSVQLALNEFFVLYKQK
LYEDKRHHLAIEQLMAEKIELKKKLLEIEQKKLSLK*

LD44187.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3995-PA 322 CG3995-PA 1..322 15..336 1663 100 Plus
CG30428-PA 263 CG30428-PA 3..256 87..315 187 25.6 Plus
CG30428-PB 247 CG30428-PB 1..240 101..315 163 25 Plus

LD44187.pep Sequence

Translation from 42 to 1010

> LD44187.pep
MKRKTSEIWCFFRAVDDTFAVCNICKAKLSYKTTTTNLSKHMNRMHPTSG
LNRNSKYKFQPQTTIAIDRNKAKPRNSTQELILLEFVKKHPRLLQNPTWE
TRGNLESLWEELSSELNSHGPPRKDIATWRRALKDWKRFILRKVEKNEMQ
NMPFGTSLTSSEETIATLCRLNEDVSQIIMKVSDDEMHENSTTEFDVDEV
EDVVPEEDGGALQTSAEYVYEPEENKTDIDPLYLQSNKRAALASSRLAEE
ETTLLDKISNNLEMVHDTANSVQLALNEFFVLYKQKLYEDKRHHLAIEQL
MAEKIELKKKLLEIEQKKLSLK*

LD44187.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17912-PA 323 GF17912-PA 1..323 1..322 1319 78.2 Plus
Dana\GF13363-PA 294 GF13363-PA 2..110 72..184 166 31 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16795-PA 322 GG16795-PA 1..322 1..322 1600 91.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19556-PA 319 GH19556-PA 1..319 1..322 919 61.7 Plus
Dgri\GH22659-PA 384 GH22659-PA 119..227 71..173 178 34.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3995-PA 322 CG3995-PA 1..322 1..322 1663 100 Plus
CG30428-PA 263 CG30428-PA 3..256 73..301 187 25.6 Plus
CG30428-PB 247 CG30428-PB 1..240 87..301 163 25 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23852-PA 323 GI23852-PA 1..323 1..322 1115 64.8 Plus
Dmoj\GI21172-PA 281 GI21172-PA 14..131 68..179 175 35 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22988-PA 319 GL22988-PA 1..319 1..322 1200 69.8 Plus
Dper\GL22369-PA 318 GL22369-PA 92..208 68..178 151 34.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17831-PA 319 GA17831-PA 1..319 1..322 1208 69.8 Plus
Dpse\GA15840-PB 251 GA15840-PB 1..92 87..171 150 32.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15390-PA 322 GM15390-PA 1..322 1..322 1689 98.4 Plus
Dsec\GM11929-PA 274 GM11929-PA 10..117 71..171 180 32.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20256-PA 322 GD20256-PA 1..322 1..322 1678 97.8 Plus
Dsim\GD11923-PA 233 GD11923-PA 1..107 72..171 174 32.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10567-PA 321 GJ10567-PA 1..321 1..322 1114 64.3 Plus
Dvir\GJ21029-PA 273 GJ21029-PA 2..117 70..179 173 33.9 Plus
Dvir\GJ15844-PA 333 GJ15844-PA 53..175 61..175 149 31.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13382-PA 324 GK13382-PA 2..324 1..322 1066 64.6 Plus
Dwil\GK21578-PA 254 GK21578-PA 1..96 87..175 146 35.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26112-PA 322 GE26112-PA 1..322 1..322 1638 94.4 Plus
Dyak\GE14469-PA 264 GE14469-PA 1..107 72..171 171 34.3 Plus